Wall clock time and date at job start Mon Mar 30 2020 06:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08989 * 109.47470 * 2 1 4 4 C 1.53003 * 109.46782 * 239.99564 * 2 1 3 5 5 C 1.50697 * 109.47071 * 175.00078 * 4 2 1 6 6 H 1.08004 * 120.00131 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00071 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99810 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00073 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47336 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47027 * 120.00054 * 9 7 5 12 12 H 1.48497 * 109.47412 * 239.99875 * 9 7 5 13 13 O 1.45203 * 109.47132 * 120.00368 * 2 1 3 14 14 C 1.34227 * 116.99550 * 269.99431 * 13 2 1 15 15 O 1.20826 * 119.99982 * 0.02562 * 14 13 2 16 16 C 1.50701 * 120.00312 * 179.97438 * 14 13 2 17 17 C 1.50689 * 109.47698 * 179.97438 * 16 14 13 18 18 C 1.38293 * 119.92619 * 90.00181 * 17 16 14 19 19 C 1.38103 * 120.07544 * 180.02562 * 18 17 16 20 20 C 1.38914 * 119.92585 * 0.02562 * 19 18 17 21 21 N 1.39671 * 120.07130 * 179.97438 * 20 19 18 22 22 C 1.38912 * 119.84788 * 0.25342 * 20 19 18 23 23 C 1.38098 * 119.92495 * 359.48977 * 22 20 19 24 24 H 1.08995 * 109.47611 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46617 * 300.00142 * 1 2 3 26 26 H 1.08994 * 109.47189 * 59.99780 * 1 2 3 27 27 H 1.08998 * 109.47197 * 295.00616 * 4 2 1 28 28 H 1.08998 * 109.47049 * 55.00281 * 4 2 1 29 29 H 0.97003 * 119.99368 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.46897 * 59.99591 * 16 14 13 31 31 H 1.09003 * 109.46911 * 300.00907 * 16 14 13 32 32 H 1.08001 * 119.95790 * 359.97438 * 18 17 16 33 33 H 1.07999 * 120.03416 * 179.97438 * 19 18 17 34 34 H 0.97001 * 120.00529 * 0.02562 * 21 20 19 35 35 H 0.97005 * 119.99745 * 179.72366 * 21 20 19 36 36 H 1.08005 * 120.03088 * 179.72680 * 22 20 19 37 37 H 1.08005 * 119.96252 * 180.25688 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5418 -0.6151 -1.3128 6 1 4.0790 -0.0863 -0.5393 7 6 4.2302 -1.1929 -2.3584 8 7 3.5760 -1.8364 -3.3005 9 14 6.0918 -1.0605 -2.4375 10 1 6.5836 -0.2912 -1.2664 11 1 6.6860 -2.4214 -2.4201 12 1 6.4859 -0.3644 -3.6886 13 8 2.0140 -0.6846 1.1855 14 6 2.2172 0.0639 2.2810 15 8 1.9975 1.2517 2.2505 16 6 2.7183 -0.5772 3.5495 17 6 2.8616 0.4730 4.6206 18 6 1.7970 0.7550 5.4571 19 6 1.9247 1.7172 6.4395 20 6 3.1241 2.4025 6.5865 21 7 3.2565 3.3766 7.5787 22 6 4.1895 2.1208 5.7409 23 6 4.0567 1.1537 4.7641 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.7515 -1.7716 -1.2056 28 1 1.6053 -0.2619 -2.1370 29 1 4.0604 -2.2426 -4.0363 30 1 3.6872 -1.0410 3.3639 31 1 2.0088 -1.3369 3.8774 32 1 0.8645 0.2227 5.3413 33 1 1.0928 1.9372 7.0921 34 1 2.5106 3.5750 8.1663 35 1 4.0958 3.8517 7.6831 36 1 5.1219 2.6549 5.8497 37 1 4.8861 0.9312 4.1089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695810668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:58 Heat of formation + Delta-G solvation = -79.863031 kcal Electronic energy + Delta-G solvation = -19160.932550 eV Core-core repulsion = 16095.388707 eV Total energy + Delta-G solvation = -3065.543844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03802 -39.09528 -36.23291 -34.84959 -33.34816 -31.68788 -30.87772 -30.85960 -27.41336 -26.58761 -23.40443 -22.83152 -21.99456 -20.53608 -19.58302 -17.19752 -17.11122 -16.98586 -16.36569 -15.73892 -15.43711 -15.01767 -14.43223 -14.18431 -13.69245 -13.37179 -13.25535 -13.03706 -12.83007 -12.42674 -11.90903 -11.73354 -11.56557 -11.45232 -11.33072 -10.90978 -10.77882 -10.71709 -10.55886 -10.30425 -9.90750 -9.72335 -9.29447 -9.00161 -8.87473 -8.37722 -7.52581 -6.00691 -4.01971 1.49780 1.56400 2.87284 3.32251 3.39591 3.43358 3.44726 3.73900 4.03235 4.46967 4.84927 4.87867 5.02284 5.31900 5.35090 5.44490 5.50296 5.65746 5.70746 5.77701 5.86085 5.90204 6.07828 6.08334 6.30536 6.37324 6.43705 6.62671 6.75632 6.79483 6.86915 7.26064 7.39039 7.54484 7.59982 7.73048 7.96119 8.35795 8.53678 9.01624 9.61215 11.10778 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024445 B = 0.004395 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.139323 B = 6368.935437 C = 7184.292648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 H 0.073 0.927 4 C 0.023 3.977 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 O -0.337 6.337 14 C 0.455 3.545 15 O -0.515 6.515 16 C -0.070 4.070 17 C -0.125 4.125 18 C -0.055 4.055 19 C -0.199 4.199 20 C 0.212 3.788 21 N -0.882 5.882 22 C -0.197 4.197 23 C -0.053 4.053 24 H 0.059 0.941 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.029 0.971 28 H 0.039 0.961 29 H 0.260 0.740 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.396 0.604 35 H 0.396 0.604 36 H 0.118 0.882 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.380 5.415 19.912 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.091 0.909 4 C -0.014 4.014 5 C -0.552 4.552 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 O -0.253 6.253 14 C 0.298 3.702 15 O -0.404 6.404 16 C -0.108 4.108 17 C -0.127 4.127 18 C -0.074 4.074 19 C -0.221 4.221 20 C 0.108 3.892 21 N -0.421 5.421 22 C -0.219 4.219 23 C -0.072 4.072 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.223 0.777 35 H 0.224 0.776 36 H 0.136 0.864 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.442 5.637 19.651 20.589 hybrid contribution 1.017 0.456 0.020 1.115 sum -1.425 6.092 19.671 20.642 Atomic orbital electron populations 1.22221 0.96455 1.02063 1.01591 1.23132 0.91912 0.97641 0.83459 0.90897 1.19312 0.96573 0.96483 0.88994 1.21158 0.91758 1.34264 1.07973 0.92718 1.24982 0.98483 0.95261 0.95645 1.69966 1.35445 1.36106 1.12060 0.86525 0.85732 0.77782 0.77938 1.19758 1.20933 1.21010 1.86591 1.76008 1.42382 1.20319 1.23498 0.74759 0.86119 0.85861 1.90606 1.48395 1.16821 1.84591 1.20198 1.04430 0.97313 0.88829 1.19087 0.94813 1.00568 0.98218 1.20716 0.97404 0.95811 0.93442 1.20472 0.96754 1.01594 1.03305 1.17778 0.93852 0.88809 0.88764 1.42440 1.18101 1.43722 1.37862 1.20503 0.98486 1.03252 0.99669 1.20789 0.96967 0.93651 0.95751 0.92156 0.93487 0.91241 0.95232 0.94309 0.92999 0.87182 0.87536 0.86233 0.86456 0.77668 0.77621 0.86371 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.55 37.16 0.35 -2.71 16 2 C 0.09 2.07 2.50 -26.73 -0.07 2.00 16 3 H 0.07 1.72 7.16 -51.94 -0.37 1.35 16 4 C 0.02 0.60 4.69 -27.88 -0.13 0.47 16 5 C -0.51 -14.73 8.88 -34.44 -0.31 -15.03 16 6 H 0.05 1.57 7.74 -52.48 -0.41 1.17 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 O -0.34 -7.25 9.64 -39.25 -0.38 -7.63 16 14 C 0.45 8.67 7.92 36.01 0.29 8.96 16 15 O -0.51 -11.05 15.25 -18.75 -0.29 -11.33 16 16 C -0.07 -0.99 5.94 -29.04 -0.17 -1.16 16 17 C -0.12 -1.74 4.38 -104.59 -0.46 -2.20 16 18 C -0.06 -0.70 9.69 -39.61 -0.38 -1.08 16 19 C -0.20 -2.30 9.90 -39.38 -0.39 -2.69 16 20 C 0.21 2.39 6.75 -83.79 -0.57 1.82 16 21 N -0.88 -6.86 9.09 32.41 0.29 -6.57 16 22 C -0.20 -2.38 9.90 -39.38 -0.39 -2.77 16 23 C -0.05 -0.72 9.69 -39.62 -0.38 -1.10 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.11 1.42 8.08 -51.92 -0.42 1.00 16 31 H 0.11 1.23 8.09 -51.93 -0.42 0.81 16 32 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.40 2.33 8.84 -40.82 -0.36 1.97 16 35 H 0.40 2.41 8.84 -40.82 -0.36 2.05 16 36 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 37 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -33.56 323.38 -7.76 -41.32 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -5.28 Total: 2.49 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: -2.70 Total: -13.94 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 1.03 Total: -32.66 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.66 Total: -18.96 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.56 -7.76 -41.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.542 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds