Wall clock time and date at job start Mon Mar 30 2020 06:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08989 * 109.47470 * 2 1 4 4 C 1.53003 * 109.46782 * 239.99564 * 2 1 3 5 5 C 1.50697 * 109.47071 * 175.00078 * 4 2 1 6 6 H 1.08004 * 120.00131 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00071 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99810 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00073 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47336 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47027 * 120.00054 * 9 7 5 12 12 H 1.48497 * 109.47412 * 239.99875 * 9 7 5 13 13 O 1.45203 * 109.47132 * 120.00368 * 2 1 3 14 14 C 1.34227 * 116.99550 * 269.99431 * 13 2 1 15 15 O 1.20826 * 119.99982 * 0.02562 * 14 13 2 16 16 C 1.50701 * 120.00312 * 179.97438 * 14 13 2 17 17 C 1.50689 * 109.47698 * 179.97438 * 16 14 13 18 18 C 1.38293 * 119.92619 * 90.00181 * 17 16 14 19 19 C 1.38103 * 120.07544 * 180.02562 * 18 17 16 20 20 C 1.38914 * 119.92585 * 0.02562 * 19 18 17 21 21 N 1.39671 * 120.07130 * 179.97438 * 20 19 18 22 22 C 1.38912 * 119.84788 * 0.25342 * 20 19 18 23 23 C 1.38098 * 119.92495 * 359.48977 * 22 20 19 24 24 H 1.08995 * 109.47611 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46617 * 300.00142 * 1 2 3 26 26 H 1.08994 * 109.47189 * 59.99780 * 1 2 3 27 27 H 1.08998 * 109.47197 * 295.00616 * 4 2 1 28 28 H 1.08998 * 109.47049 * 55.00281 * 4 2 1 29 29 H 0.97003 * 119.99368 * 179.97438 * 8 7 5 30 30 H 1.09007 * 109.46897 * 59.99591 * 16 14 13 31 31 H 1.09003 * 109.46911 * 300.00907 * 16 14 13 32 32 H 1.08001 * 119.95790 * 359.97438 * 18 17 16 33 33 H 1.07999 * 120.03416 * 179.97438 * 19 18 17 34 34 H 0.97001 * 120.00529 * 0.02562 * 21 20 19 35 35 H 0.97005 * 119.99745 * 179.72366 * 21 20 19 36 36 H 1.08005 * 120.03088 * 179.72680 * 22 20 19 37 37 H 1.08005 * 119.96252 * 180.25688 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5418 -0.6151 -1.3128 6 1 4.0790 -0.0863 -0.5393 7 6 4.2302 -1.1929 -2.3584 8 7 3.5760 -1.8364 -3.3005 9 14 6.0918 -1.0605 -2.4375 10 1 6.5836 -0.2912 -1.2664 11 1 6.6860 -2.4214 -2.4201 12 1 6.4859 -0.3644 -3.6886 13 8 2.0140 -0.6846 1.1855 14 6 2.2172 0.0639 2.2810 15 8 1.9975 1.2517 2.2505 16 6 2.7183 -0.5772 3.5495 17 6 2.8616 0.4730 4.6206 18 6 1.7970 0.7550 5.4571 19 6 1.9247 1.7172 6.4395 20 6 3.1241 2.4025 6.5865 21 7 3.2565 3.3766 7.5787 22 6 4.1895 2.1208 5.7409 23 6 4.0567 1.1537 4.7641 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.7515 -1.7716 -1.2056 28 1 1.6053 -0.2619 -2.1370 29 1 4.0604 -2.2426 -4.0363 30 1 3.6872 -1.0410 3.3639 31 1 2.0088 -1.3369 3.8774 32 1 0.8645 0.2227 5.3413 33 1 1.0928 1.9372 7.0921 34 1 2.5106 3.5750 8.1663 35 1 4.0958 3.8517 7.6831 36 1 5.1219 2.6549 5.8497 37 1 4.8861 0.9312 4.1089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695810668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:58 Heat of formation + Delta-G solvation = -100.119049 kcal Electronic energy + Delta-G solvation = -19161.810917 eV Core-core repulsion = 16095.388707 eV Total energy + Delta-G solvation = -3066.422210 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.47953 -40.14481 -37.81977 -35.78745 -35.39045 -33.48348 -31.99226 -31.76231 -29.38078 -27.61582 -25.35686 -23.73671 -23.37313 -21.87371 -21.17311 -18.72857 -18.51104 -18.01562 -17.78708 -17.22822 -16.85672 -16.44680 -16.10413 -15.20292 -14.86812 -14.70374 -14.43988 -14.24514 -14.09252 -13.98197 -13.77504 -13.34378 -13.20502 -12.89881 -12.67975 -12.57474 -12.42043 -12.25748 -11.80573 -11.68902 -11.55791 -11.40134 -11.18975 -10.92717 -10.58915 -9.80053 -8.35061 -8.21776 -6.31384 0.57581 0.60086 1.37763 1.39130 1.39287 1.52536 2.02834 2.40293 3.01243 3.06309 3.12525 3.79531 3.95635 4.04188 4.09977 4.17705 4.26624 4.35885 4.43484 4.54098 4.66477 4.81281 4.81637 4.97670 4.98824 5.12656 5.17894 5.36444 5.41956 5.42297 5.51658 5.73888 5.80141 5.85291 6.01252 6.18155 6.62694 6.78948 6.96829 7.03841 7.36240 8.90095 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024445 B = 0.004395 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.139323 B = 6368.935437 C = 7184.292648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.097 3.903 3 H 0.054 0.946 4 C 0.029 3.971 5 C -0.535 4.535 6 H 0.046 0.954 7 C 0.006 3.994 8 N -0.928 5.928 9 Si 0.961 3.039 10 H -0.269 1.269 11 H -0.273 1.273 12 H -0.276 1.276 13 O -0.351 6.351 14 C 0.452 3.548 15 O -0.542 6.542 16 C -0.061 4.061 17 C -0.149 4.149 18 C -0.063 4.063 19 C -0.207 4.207 20 C 0.212 3.788 21 N -0.868 5.868 22 C -0.210 4.210 23 C -0.071 4.071 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.080 0.920 27 H 0.010 0.990 28 H 0.024 0.976 29 H 0.266 0.734 30 H 0.121 0.879 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.407 0.593 35 H 0.406 0.594 36 H 0.134 0.866 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.004 5.839 21.668 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.573 4.573 6 H 0.065 0.935 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.786 3.214 10 H -0.193 1.193 11 H -0.198 1.198 12 H -0.201 1.201 13 O -0.268 6.268 14 C 0.296 3.704 15 O -0.433 6.433 16 C -0.098 4.098 17 C -0.151 4.151 18 C -0.082 4.082 19 C -0.230 4.230 20 C 0.106 3.894 21 N -0.408 5.408 22 C -0.233 4.233 23 C -0.090 4.090 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.028 0.972 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.139 0.861 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.237 0.763 35 H 0.235 0.765 36 H 0.151 0.849 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.068 6.081 21.444 22.385 hybrid contribution 0.891 0.387 -0.451 1.071 sum -1.177 6.469 20.993 21.998 Atomic orbital electron populations 1.22125 0.93308 1.03068 1.02771 1.22830 0.94307 0.95781 0.82839 0.92751 1.19142 0.95579 0.95478 0.90597 1.21440 0.93201 1.34552 1.08094 0.93527 1.25846 1.03573 0.94669 0.95111 1.70068 1.37501 1.36642 1.12617 0.85460 0.79582 0.78226 0.78178 1.19328 1.19844 1.20120 1.86578 1.76509 1.42967 1.20736 1.24506 0.73727 0.85925 0.86205 1.90581 1.49643 1.18079 1.84949 1.20318 1.05370 0.97846 0.86271 1.19150 0.95584 1.01488 0.98891 1.20968 0.97586 0.96175 0.93446 1.20778 0.97613 1.01219 1.03389 1.17930 0.93513 0.89000 0.88936 1.42423 1.19102 1.42483 1.36807 1.20724 0.99600 1.03252 0.99697 1.20953 0.97120 0.94425 0.96475 0.91219 0.92245 0.90082 0.97201 0.95798 0.92552 0.86130 0.84683 0.84884 0.84206 0.76339 0.76491 0.84852 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.65 9.55 71.98 0.69 -4.96 16 2 C 0.10 4.40 2.50 30.60 0.08 4.48 16 3 H 0.05 2.64 7.16 -2.39 -0.02 2.63 16 4 C 0.03 1.56 4.69 29.85 0.14 1.70 16 5 C -0.53 -31.29 8.88 25.60 0.23 -31.07 16 6 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 9 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 13 O -0.35 -15.22 9.64 -51.39 -0.50 -15.72 16 14 C 0.45 17.17 7.92 71.24 0.56 17.73 16 15 O -0.54 -23.37 15.25 21.96 0.33 -23.04 16 16 C -0.06 -1.67 5.94 29.10 0.17 -1.49 16 17 C -0.15 -4.02 4.38 -19.84 -0.09 -4.11 16 18 C -0.06 -1.51 9.69 22.25 0.22 -1.29 16 19 C -0.21 -4.37 9.90 22.40 0.22 -4.15 16 20 C 0.21 4.37 6.75 38.22 0.26 4.63 16 21 N -0.87 -11.27 9.09 -51.37 -0.47 -11.74 16 22 C -0.21 -4.84 9.90 22.40 0.22 -4.62 16 23 C -0.07 -1.89 9.69 22.25 0.22 -1.68 16 24 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.02 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 30 H 0.12 3.02 8.08 -2.38 -0.02 3.00 16 31 H 0.14 2.86 8.09 -2.39 -0.02 2.84 16 32 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 34 H 0.41 3.62 8.84 -92.71 -0.82 2.80 16 35 H 0.41 3.89 8.84 -92.70 -0.82 3.07 16 36 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 37 H 0.12 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -72.24 323.38 4.50 -67.74 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -0.56 Total: 15.58 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 3.38 Total: -24.02 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -0.18 Total: -67.56 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.16 Total: -38.76 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -72.24 4.50 -67.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695810668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.379 kcal (2) G-P(sol) polarization free energy of solvation -72.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds