Wall clock time and date at job start Mon Mar 30 2020 06:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21293 * 120.00068 * 2 1 4 4 N 1.34780 * 120.00097 * 179.97438 * 2 1 3 5 5 C 1.40122 * 119.99990 * 175.92256 * 4 2 1 6 6 C 1.38719 * 120.08894 * 34.38185 * 5 4 2 7 7 C 1.38199 * 119.98390 * 180.02562 * 6 5 4 8 8 C 1.38272 * 120.16634 * 0.02562 * 7 6 5 9 9 C 1.38248 * 120.17853 * 359.70066 * 8 7 6 10 10 C 1.38556 * 120.01053 * 0.55780 * 9 8 7 11 11 O 1.35979 * 120.08282 * 179.74900 * 10 9 8 12 12 C 1.42902 * 116.99556 * 4.34537 * 11 10 9 13 13 H 1.09003 * 109.47519 * 323.90757 * 12 11 10 14 14 C 1.53001 * 109.47262 * 83.91056 * 12 11 10 15 15 C 1.53004 * 109.46791 * 203.91072 * 12 11 10 16 16 C 1.50694 * 109.47368 * 65.00121 * 15 12 11 17 17 H 1.08003 * 119.99764 * 359.97438 * 16 15 12 18 18 C 1.37874 * 120.00121 * 179.72551 * 16 15 12 19 19 N 1.31512 * 120.00039 * 0.27304 * 18 16 15 20 20 Si 1.86798 * 120.00100 * 180.27324 * 18 16 15 21 21 H 1.48505 * 109.46943 * 60.00156 * 20 18 16 22 22 H 1.48502 * 109.47221 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47562 * 299.99958 * 20 18 16 24 24 H 1.09004 * 109.47183 * 270.00161 * 1 2 3 25 25 H 1.08999 * 109.46767 * 30.00404 * 1 2 3 26 26 H 1.09005 * 109.47275 * 150.00331 * 1 2 3 27 27 H 0.97001 * 120.00045 * 355.92820 * 4 2 1 28 28 H 1.07999 * 120.00945 * 0.03704 * 6 5 4 29 29 H 1.08007 * 119.91517 * 179.97438 * 7 6 5 30 30 H 1.07994 * 119.91266 * 179.97438 * 8 7 6 31 31 H 1.07997 * 119.99834 * 180.30029 * 9 8 7 32 32 H 1.08995 * 109.47322 * 179.97438 * 14 12 11 33 33 H 1.08995 * 109.46821 * 299.99869 * 14 12 11 34 34 H 1.09002 * 109.46631 * 59.99690 * 14 12 11 35 35 H 1.09004 * 109.46908 * 304.99476 * 15 12 11 36 36 H 1.09007 * 109.47146 * 185.00131 * 15 12 11 37 37 H 0.97001 * 120.00139 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5795 -1.1688 -0.0858 6 6 4.3142 -0.1552 0.5118 7 6 5.6935 -0.1586 0.4249 8 6 6.3442 -1.1701 -0.2572 9 6 5.6190 -2.1866 -0.8504 10 6 4.2356 -2.1877 -0.7725 11 8 3.5206 -3.1840 -1.3598 12 6 4.2624 -4.2485 -1.9588 13 1 5.1706 -3.8494 -2.4104 14 6 4.6343 -5.2764 -0.8882 15 6 3.4097 -4.9207 -3.0368 16 6 3.1463 -3.9417 -4.1518 17 1 3.5466 -2.9402 -4.0968 18 6 2.3986 -4.3263 -5.2445 19 7 1.9107 -5.5457 -5.3112 20 14 2.0785 -3.1152 -6.6302 21 1 3.3719 -2.6799 -7.2158 22 1 1.2549 -3.7690 -7.6787 23 1 1.3537 -1.9336 -6.0975 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6978 -2.0062 0.0605 28 1 3.8086 0.6363 1.0450 29 1 6.2645 0.6313 0.8903 30 1 7.4222 -1.1685 -0.3229 31 1 6.1305 -2.9778 -1.3783 32 1 5.1996 -6.0886 -1.3451 33 1 5.2416 -4.7975 -0.1202 34 1 3.7259 -5.6755 -0.4367 35 1 2.4624 -5.2413 -2.6033 36 1 3.9402 -5.7872 -3.4318 37 1 1.3843 -5.8161 -6.0798 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695836270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:40 Heat of formation + Delta-G solvation = -78.137330 kcal Electronic energy + Delta-G solvation = -19844.229613 eV Core-core repulsion = 16778.760602 eV Total energy + Delta-G solvation = -3065.469012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.72871 -40.37432 -38.41178 -35.80596 -35.38873 -33.37378 -31.81489 -30.76438 -29.35671 -29.16399 -25.37426 -24.48250 -23.26101 -21.89453 -21.12747 -19.48955 -18.52940 -18.08167 -17.92960 -16.92553 -16.56301 -16.03663 -15.90904 -15.80517 -15.37298 -14.78974 -14.61248 -14.24361 -13.83541 -13.69994 -13.43577 -13.37398 -13.22512 -13.09950 -12.75262 -12.68120 -12.58175 -12.45843 -12.26138 -11.72420 -11.38681 -11.26445 -11.08009 -10.83032 -10.59232 -9.51971 -8.74255 -8.22811 -6.31021 0.30276 0.50413 1.36278 1.37505 1.45905 1.57384 2.16226 2.37756 2.42016 2.87621 3.11814 3.80310 3.94728 4.02193 4.12770 4.24394 4.33825 4.42947 4.44540 4.52950 4.62789 4.66470 4.77975 4.87562 5.02668 5.06104 5.19785 5.26614 5.33043 5.41383 5.49022 5.54989 5.60965 5.75688 5.96076 6.18169 6.44164 6.64682 6.80551 7.12709 7.36419 8.88326 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.006666 C = 0.005498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.760950 B = 4199.204110 C = 5091.952546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.503 3.497 3 O -0.578 6.578 4 N -0.659 5.659 5 C 0.081 3.919 6 C -0.097 4.097 7 C -0.150 4.150 8 C -0.088 4.088 9 C -0.208 4.208 10 C 0.099 3.901 11 O -0.313 6.313 12 C 0.094 3.906 13 H 0.065 0.935 14 C -0.165 4.165 15 C 0.031 3.969 16 C -0.530 4.530 17 H 0.046 0.954 18 C 0.010 3.990 19 N -0.927 5.927 20 Si 0.952 3.048 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.276 1.276 24 H 0.123 0.877 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.421 0.579 28 H 0.136 0.864 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.140 0.860 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.003 0.997 36 H 0.025 0.975 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.234 6.821 13.178 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.294 3.706 3 O -0.458 6.458 4 N -0.304 5.304 5 C -0.013 4.013 6 C -0.117 4.117 7 C -0.168 4.168 8 C -0.107 4.107 9 C -0.227 4.227 10 C 0.051 3.949 11 O -0.227 6.227 12 C 0.038 3.962 13 H 0.083 0.917 14 C -0.222 4.222 15 C -0.006 4.006 16 C -0.568 4.568 17 H 0.064 0.936 18 C -0.189 4.189 19 N -0.567 5.567 20 Si 0.777 3.223 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.201 1.201 24 H 0.141 0.859 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.258 0.742 28 H 0.154 0.846 29 H 0.169 0.831 30 H 0.173 0.827 31 H 0.157 0.843 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.021 0.979 36 H 0.043 0.957 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.262 7.398 13.029 15.334 hybrid contribution -0.437 -0.210 -1.088 1.191 sum 2.825 7.188 11.941 14.221 Atomic orbital electron populations 1.21913 0.87264 1.06179 1.06780 1.21811 0.92605 0.82316 0.73917 1.90650 1.71653 1.32529 1.50976 1.43511 1.04614 1.10565 1.71719 1.17377 0.83809 0.97720 1.02404 1.21183 0.94642 0.97358 0.98553 1.21240 0.93261 1.00268 1.02045 1.21272 1.01152 0.92597 0.95665 1.21405 0.92030 1.03294 1.05952 1.19220 0.91624 0.90276 0.93733 1.86138 1.36353 1.31441 1.68782 1.22607 0.94836 0.85396 0.93354 0.91698 1.22269 1.02146 0.99144 0.98641 1.19088 0.94716 0.95004 0.91745 1.21393 1.32732 0.98358 1.04360 0.93589 1.25739 0.95567 0.96844 1.00719 1.70033 1.36288 1.19102 1.31304 0.85709 0.78519 0.79107 0.78982 1.19443 1.20251 1.20137 0.85894 0.88240 0.88523 0.74193 0.84645 0.83074 0.82725 0.84287 0.90169 0.91233 0.92237 0.97864 0.95664 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 10.31 71.24 0.73 -2.30 16 2 C 0.50 14.75 7.79 87.66 0.68 15.43 16 3 O -0.58 -20.94 14.51 -3.07 -0.04 -20.99 16 4 N -0.66 -20.16 5.19 -303.14 -1.57 -21.73 16 5 C 0.08 2.79 6.33 38.18 0.24 3.03 16 6 C -0.10 -3.03 8.70 22.38 0.19 -2.84 16 7 C -0.15 -3.88 10.04 22.27 0.22 -3.65 16 8 C -0.09 -2.25 10.04 22.28 0.22 -2.03 16 9 C -0.21 -6.45 8.43 22.35 0.19 -6.27 16 10 C 0.10 3.58 6.57 22.60 0.15 3.73 16 11 O -0.31 -12.78 9.11 -93.31 -0.85 -13.63 16 12 C 0.09 3.74 2.19 30.60 0.07 3.81 16 13 H 0.07 2.55 5.90 -2.39 -0.01 2.53 16 14 C -0.16 -5.17 9.31 71.98 0.67 -4.50 16 15 C 0.03 1.59 4.68 29.85 0.14 1.73 16 16 C -0.53 -30.04 8.88 25.60 0.23 -29.82 16 17 H 0.05 2.63 7.74 -2.91 -0.02 2.61 16 18 C 0.01 0.55 5.46 84.65 0.46 1.01 16 19 N -0.93 -55.05 13.29 21.45 0.28 -54.76 16 20 Si 0.95 44.87 29.54 68.60 2.03 46.89 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.42 11.45 8.56 -92.71 -0.79 10.66 16 28 H 0.14 4.30 6.19 -2.91 -0.02 4.28 16 29 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.14 4.08 5.75 -2.91 -0.02 4.07 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.07 1.89 7.50 -2.39 -0.02 1.87 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 36 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -70.53 314.74 4.33 -66.20 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.28 Total: 20.67 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 4.20 Total: -22.65 kcal Atomic # 7 Polarization: -75.20 SS G_CDS: -1.29 Total: -76.49 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.89 Total: -34.61 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -70.53 4.33 -66.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695836270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.937 kcal (2) G-P(sol) polarization free energy of solvation -70.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds