Wall clock time and date at job start Mon Mar 30 2020 06:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29330 * 119.99791 * 2 1 4 4 O 1.41599 * 120.00023 * 359.97438 * 3 2 1 5 5 C 1.47648 * 120.00372 * 179.97438 * 2 1 3 6 6 C 1.39657 * 120.11976 * 0.02562 * 5 2 1 7 7 C 1.37956 * 119.96001 * 179.97438 * 6 5 2 8 8 C 1.38284 * 120.21003 * 0.02562 * 7 6 5 9 9 C 1.38817 * 120.24644 * 0.23943 * 8 7 6 10 10 O 1.35910 * 119.98017 * 179.72120 * 9 8 7 11 11 C 1.42892 * 117.00351 * 5.44584 * 10 9 8 12 12 H 1.09001 * 109.47368 * 35.11742 * 11 10 9 13 13 C 1.53005 * 109.47028 * 275.12068 * 11 10 9 14 14 C 1.52996 * 109.47505 * 155.12498 * 11 10 9 15 15 C 1.50700 * 109.47075 * 294.99800 * 14 11 10 16 16 H 1.08008 * 119.99651 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00329 * 179.97438 * 15 14 11 18 18 N 1.31510 * 120.00122 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00032 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47032 * 60.00145 * 19 17 15 21 21 H 1.48500 * 109.47104 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47085 * 300.00136 * 19 17 15 23 23 C 1.38482 * 120.03735 * 359.48085 * 9 8 7 24 24 H 1.08994 * 109.47444 * 270.00251 * 1 2 3 25 25 H 1.08998 * 109.46872 * 30.00226 * 1 2 3 26 26 H 1.08998 * 109.46522 * 149.99874 * 1 2 3 27 27 H 0.96705 * 114.00382 * 180.02562 * 4 3 2 28 28 H 1.07996 * 120.01748 * 0.02562 * 6 5 2 29 29 H 1.07998 * 119.89504 * 179.97438 * 7 6 5 30 30 H 1.08000 * 119.87672 * 179.97438 * 8 7 6 31 31 H 1.08994 * 109.47614 * 299.99915 * 13 11 10 32 32 H 1.09005 * 109.47076 * 60.00307 * 13 11 10 33 33 H 1.09000 * 109.47294 * 179.97438 * 13 11 10 34 34 H 1.09000 * 109.47461 * 54.99566 * 14 11 10 35 35 H 1.08999 * 109.47635 * 174.99882 * 14 11 10 36 36 H 0.97002 * 120.00402 * 179.97438 * 18 17 15 37 37 H 1.07995 * 120.10878 * 180.25441 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1537 1.1201 0.0000 4 8 1.4456 2.3463 -0.0005 5 6 2.2454 -1.2786 0.0006 6 6 1.5497 -2.4896 0.0006 7 6 2.2429 -3.6824 0.0006 8 6 3.6257 -3.6835 0.0011 9 6 4.3259 -2.4849 0.0067 10 8 5.6850 -2.4923 0.0129 11 6 6.3274 -3.7630 -0.1075 12 1 5.7429 -4.4046 -0.7669 13 6 6.4344 -4.4132 1.2734 14 6 7.7287 -3.5728 -0.6914 15 6 7.6190 -3.0467 -2.0993 16 1 6.6470 -2.8664 -2.5342 17 6 8.7595 -2.7955 -2.8322 18 7 9.9431 -3.0155 -2.3029 19 14 8.6235 -2.1440 -4.5777 20 1 7.9106 -0.8413 -4.5656 21 1 9.9836 -1.9581 -5.1441 22 1 7.8682 -3.1139 -5.4106 23 6 3.6405 -1.2816 0.0008 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3632 -0.8900 -0.5139 27 1 2.0140 3.1287 -0.0009 28 1 0.4697 -2.4922 -0.0003 29 1 1.7038 -4.6182 0.0010 30 1 4.1629 -4.6204 0.0015 31 1 7.0188 -3.7717 1.9329 32 1 5.4360 -4.5488 1.6895 33 1 6.9240 -5.3827 1.1816 34 1 8.2837 -2.8614 -0.0799 35 1 8.2514 -4.5293 -0.7007 36 1 10.7455 -2.8391 -2.8186 37 1 4.1841 -0.3484 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695889270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:21 Heat of formation + Delta-G solvation = -16.901091 kcal Electronic energy + Delta-G solvation = -19188.228683 eV Core-core repulsion = 16125.415075 eV Total energy + Delta-G solvation = -3062.813609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.92039 -38.05512 -36.73969 -34.13546 -33.43448 -31.76534 -30.16273 -29.62432 -28.08088 -27.45911 -23.76296 -23.24364 -22.01471 -20.75880 -19.18616 -17.51805 -16.97205 -16.38062 -15.87397 -15.71723 -15.24238 -14.65688 -14.50540 -14.33245 -13.99200 -13.51506 -13.07313 -12.91416 -12.73948 -12.37860 -12.11224 -11.94264 -11.87582 -11.50592 -11.33171 -11.22914 -10.75719 -10.71626 -10.48692 -10.09670 -9.98920 -9.96397 -9.38705 -9.13444 -8.50592 -8.38514 -7.79833 -6.01826 -4.03312 0.85148 1.66135 2.41943 2.96484 3.34855 3.38664 3.42694 3.78940 4.02362 4.46368 4.51610 4.97330 5.01086 5.13119 5.28521 5.35242 5.35995 5.45086 5.59005 5.64805 5.69320 5.74486 5.88213 6.00227 6.11924 6.18162 6.40361 6.50070 6.53453 6.62640 6.74342 6.79689 6.90905 7.47710 7.57750 7.62727 7.94431 8.11858 8.35610 8.99992 9.60199 11.09548 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017860 B = 0.005023 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.352801 B = 5572.957653 C = 6489.545686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.173 3.827 3 N -0.331 5.331 4 O -0.413 6.413 5 C -0.022 4.022 6 C -0.144 4.144 7 C -0.084 4.084 8 C -0.198 4.198 9 C 0.148 3.852 10 O -0.289 6.289 11 C 0.086 3.914 12 H 0.063 0.937 13 C -0.178 4.178 14 C 0.026 3.974 15 C -0.515 4.515 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.121 4.121 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.403 0.597 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.134 0.866 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.029 0.971 35 H 0.039 0.961 36 H 0.262 0.738 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.350 1.274 6.374 18.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 N -0.073 5.073 4 O -0.321 6.321 5 C -0.024 4.024 6 C -0.165 4.165 7 C -0.102 4.102 8 C -0.218 4.218 9 C 0.100 3.900 10 O -0.201 6.201 11 C 0.030 3.970 12 H 0.081 0.919 13 C -0.235 4.235 14 C -0.011 4.011 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.142 4.142 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.142 4.142 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.252 0.748 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.152 0.848 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.651 1.551 6.351 17.889 hybrid contribution -0.386 0.519 -1.008 1.197 sum -17.037 2.069 5.343 17.975 Atomic orbital electron populations 1.21254 0.91466 1.04081 1.03601 1.23205 0.94463 0.90815 0.93055 1.76650 1.23589 0.91756 1.15264 1.88352 1.35029 1.13322 1.95423 1.17891 0.91846 0.89651 1.02965 1.20971 0.99586 0.91065 1.04851 1.20778 0.93440 0.97650 0.98344 1.21570 0.95199 0.98025 1.06999 1.19093 0.84621 0.93249 0.93011 1.86307 1.13940 1.34204 1.85648 1.22904 0.97323 0.81834 0.94929 0.91868 1.22422 1.01368 1.01418 0.98328 1.19265 0.87485 0.98348 0.96013 1.21081 0.92583 1.43543 0.98139 0.92657 1.24962 0.95334 0.95599 0.98337 1.69934 0.97357 1.48972 1.37341 0.86650 0.77035 0.79663 0.84668 1.20164 1.21252 1.20245 1.20609 0.92493 0.97368 1.03695 0.89954 0.90339 0.90101 0.74846 0.85602 0.85633 0.84842 0.91860 0.93262 0.91324 0.95252 0.94322 0.92872 0.84379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.28 36.01 0.33 -1.12 16 2 C 0.17 2.35 7.12 -79.80 -0.57 1.78 16 3 N -0.33 -4.88 11.23 35.09 0.39 -4.48 16 4 O -0.41 -5.03 13.73 -11.47 -0.16 -5.18 16 5 C -0.02 -0.32 5.87 -105.05 -0.62 -0.94 16 6 C -0.14 -1.74 9.36 -39.16 -0.37 -2.11 16 7 C -0.08 -1.04 10.02 -39.67 -0.40 -1.44 16 8 C -0.20 -3.02 8.24 -39.35 -0.32 -3.34 16 9 C 0.15 2.68 6.59 -39.28 -0.26 2.42 16 10 O -0.29 -6.15 9.55 -19.46 -0.19 -6.33 16 11 C 0.09 1.75 2.17 -26.73 -0.06 1.69 16 12 H 0.06 1.24 6.31 -51.93 -0.33 0.91 16 13 C -0.18 -2.94 9.17 37.16 0.34 -2.60 16 14 C 0.03 0.65 4.68 -27.88 -0.13 0.52 16 15 C -0.52 -14.57 8.88 -34.44 -0.31 -14.88 16 16 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.90 -26.75 13.29 55.43 0.74 -26.01 16 19 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.12 -2.08 9.51 -39.02 -0.37 -2.45 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 0.81 7.35 -51.93 -0.38 0.43 16 26 H 0.08 0.65 6.47 -51.93 -0.34 0.32 16 27 H 0.40 3.12 9.28 45.56 0.42 3.55 16 28 H 0.13 1.12 6.35 -52.49 -0.33 0.78 16 29 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 30 H 0.13 1.92 5.40 -52.49 -0.28 1.63 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.71 6.90 -51.93 -0.36 0.35 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.14 2.48 7.55 -52.49 -0.40 2.09 16 LS Contribution 315.45 15.07 4.75 4.75 Total: -1.00 -32.48 315.45 -6.37 -38.85 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -4.07 Total: 2.30 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -2.82 Total: -20.87 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 1.13 Total: -30.49 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.34 Total: -11.51 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.48 -6.37 -38.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.948 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds