Wall clock time and date at job start Mon Mar 30 2020 06:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29330 * 119.99791 * 2 1 4 4 O 1.41599 * 120.00023 * 359.97438 * 3 2 1 5 5 C 1.47648 * 120.00372 * 179.97438 * 2 1 3 6 6 C 1.39657 * 120.11976 * 0.02562 * 5 2 1 7 7 C 1.37956 * 119.96001 * 179.97438 * 6 5 2 8 8 C 1.38284 * 120.21003 * 0.02562 * 7 6 5 9 9 C 1.38817 * 120.24644 * 0.23943 * 8 7 6 10 10 O 1.35910 * 119.98017 * 179.72120 * 9 8 7 11 11 C 1.42892 * 117.00351 * 5.44584 * 10 9 8 12 12 H 1.09001 * 109.47368 * 35.11742 * 11 10 9 13 13 C 1.53005 * 109.47028 * 275.12068 * 11 10 9 14 14 C 1.52996 * 109.47505 * 155.12498 * 11 10 9 15 15 C 1.50700 * 109.47075 * 294.99800 * 14 11 10 16 16 H 1.08008 * 119.99651 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00329 * 179.97438 * 15 14 11 18 18 N 1.31510 * 120.00122 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00032 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47032 * 60.00145 * 19 17 15 21 21 H 1.48500 * 109.47104 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47085 * 300.00136 * 19 17 15 23 23 C 1.38482 * 120.03735 * 359.48085 * 9 8 7 24 24 H 1.08994 * 109.47444 * 270.00251 * 1 2 3 25 25 H 1.08998 * 109.46872 * 30.00226 * 1 2 3 26 26 H 1.08998 * 109.46522 * 149.99874 * 1 2 3 27 27 H 0.96705 * 114.00382 * 180.02562 * 4 3 2 28 28 H 1.07996 * 120.01748 * 0.02562 * 6 5 2 29 29 H 1.07998 * 119.89504 * 179.97438 * 7 6 5 30 30 H 1.08000 * 119.87672 * 179.97438 * 8 7 6 31 31 H 1.08994 * 109.47614 * 299.99915 * 13 11 10 32 32 H 1.09005 * 109.47076 * 60.00307 * 13 11 10 33 33 H 1.09000 * 109.47294 * 179.97438 * 13 11 10 34 34 H 1.09000 * 109.47461 * 54.99566 * 14 11 10 35 35 H 1.08999 * 109.47635 * 174.99882 * 14 11 10 36 36 H 0.97002 * 120.00402 * 179.97438 * 18 17 15 37 37 H 1.07995 * 120.10878 * 180.25441 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1537 1.1201 0.0000 4 8 1.4456 2.3463 -0.0005 5 6 2.2454 -1.2786 0.0006 6 6 1.5497 -2.4896 0.0006 7 6 2.2429 -3.6824 0.0006 8 6 3.6257 -3.6835 0.0011 9 6 4.3259 -2.4849 0.0067 10 8 5.6850 -2.4923 0.0129 11 6 6.3274 -3.7630 -0.1075 12 1 5.7429 -4.4046 -0.7669 13 6 6.4344 -4.4132 1.2734 14 6 7.7287 -3.5728 -0.6914 15 6 7.6190 -3.0467 -2.0993 16 1 6.6470 -2.8664 -2.5342 17 6 8.7595 -2.7955 -2.8322 18 7 9.9431 -3.0155 -2.3029 19 14 8.6235 -2.1440 -4.5777 20 1 7.9106 -0.8413 -4.5656 21 1 9.9836 -1.9581 -5.1441 22 1 7.8682 -3.1139 -5.4106 23 6 3.6405 -1.2816 0.0008 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3632 -0.8900 -0.5139 27 1 2.0140 3.1287 -0.0009 28 1 0.4697 -2.4922 -0.0003 29 1 1.7038 -4.6182 0.0010 30 1 4.1629 -4.6204 0.0015 31 1 7.0188 -3.7717 1.9329 32 1 5.4360 -4.5488 1.6895 33 1 6.9240 -5.3827 1.1816 34 1 8.2837 -2.8614 -0.0799 35 1 8.2514 -4.5293 -0.7007 36 1 10.7455 -2.8391 -2.8186 37 1 4.1841 -0.3484 0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695889270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:20 Heat of formation + Delta-G solvation = -38.537387 kcal Electronic energy + Delta-G solvation = -19189.166904 eV Core-core repulsion = 16125.415075 eV Total energy + Delta-G solvation = -3063.751829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.19745 -39.26445 -37.83455 -35.55372 -34.97224 -33.51509 -31.34238 -30.75128 -29.36722 -28.97033 -25.35361 -24.73810 -23.19709 -22.22859 -20.46345 -18.80648 -18.50899 -17.93370 -17.06662 -16.96570 -16.51303 -16.33345 -15.97356 -15.42079 -15.10054 -14.70803 -14.43142 -14.36966 -13.86601 -13.67381 -13.52514 -13.40757 -13.19617 -13.04908 -12.80082 -12.66023 -12.44881 -12.38024 -11.96135 -11.75997 -11.28714 -11.18137 -10.94956 -10.93265 -10.59989 -9.62611 -9.04196 -8.22556 -6.31432 -0.23751 0.53662 1.36030 1.37174 1.39246 1.46937 2.06334 2.38521 2.43288 2.89680 3.11884 3.52468 3.91946 4.05874 4.08187 4.20633 4.23922 4.30962 4.39092 4.50105 4.58375 4.67037 4.75665 4.86504 4.97144 5.05186 5.12998 5.20104 5.34355 5.36034 5.42976 5.50996 5.51741 5.74945 5.85316 5.90433 6.17691 6.70100 6.78000 6.80634 7.36011 8.88991 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017860 B = 0.005023 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.352801 B = 5572.957653 C = 6489.545686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.166 3.834 3 N -0.369 5.369 4 O -0.411 6.411 5 C -0.028 4.028 6 C -0.124 4.124 7 C -0.073 4.073 8 C -0.202 4.202 9 C 0.112 3.888 10 O -0.326 6.326 11 C 0.094 3.906 12 H 0.071 0.929 13 C -0.167 4.167 14 C 0.027 3.973 15 C -0.532 4.532 16 H 0.049 0.951 17 C 0.005 3.995 18 N -0.930 5.930 19 Si 0.957 3.043 20 H -0.277 1.277 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.147 4.147 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.418 0.582 28 H 0.171 0.829 29 H 0.170 0.830 30 H 0.141 0.859 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.083 0.917 34 H -0.005 1.005 35 H 0.028 0.972 36 H 0.265 0.735 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.706 0.137 6.008 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.022 4.022 3 N -0.111 5.111 4 O -0.323 6.323 5 C -0.029 4.029 6 C -0.143 4.143 7 C -0.091 4.091 8 C -0.221 4.221 9 C 0.066 3.934 10 O -0.240 6.240 11 C 0.038 3.962 12 H 0.089 0.911 13 C -0.224 4.224 14 C -0.009 4.009 15 C -0.570 4.570 16 H 0.068 0.932 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.782 3.218 20 H -0.203 1.203 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.168 4.168 24 H 0.117 0.883 25 H 0.092 0.908 26 H 0.125 0.875 27 H 0.269 0.731 28 H 0.188 0.812 29 H 0.187 0.813 30 H 0.159 0.841 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.014 0.986 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.017 0.413 5.991 20.898 hybrid contribution 0.560 0.939 -0.862 1.392 sum -19.457 1.352 5.129 20.167 Atomic orbital electron populations 1.21316 0.88477 1.05138 1.04892 1.23513 0.96380 0.90065 0.92252 1.76581 1.25214 0.93022 1.16309 1.88307 1.35426 1.13244 1.95339 1.18153 0.90705 0.91422 1.02620 1.21492 1.01681 0.89643 1.01515 1.21286 0.92187 0.99645 0.95988 1.21762 0.96711 0.96921 1.06711 1.19345 0.83318 0.94872 0.95875 1.86205 1.16340 1.34489 1.86975 1.22613 0.94390 0.82191 0.96989 0.91148 1.22319 1.02958 1.01374 0.95792 1.19124 0.90581 0.96520 0.94719 1.21431 0.92425 1.43580 0.99605 0.93224 1.25827 0.94993 0.95823 1.02619 1.70048 0.98031 1.49942 1.38994 0.85625 0.77450 0.78977 0.79776 1.20285 1.20304 1.18812 1.20592 0.94062 0.96243 1.05902 0.88349 0.90809 0.87499 0.73093 0.81176 0.81282 0.84144 0.92853 0.90644 0.89821 0.98610 0.95402 0.92651 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.28 71.24 0.66 -1.66 16 2 C 0.17 4.25 7.12 45.42 0.32 4.58 16 3 N -0.37 -10.91 11.23 -42.89 -0.48 -11.39 16 4 O -0.41 -9.76 13.73 -38.78 -0.53 -10.29 16 5 C -0.03 -0.76 5.87 -20.14 -0.12 -0.88 16 6 C -0.12 -2.45 9.36 22.55 0.21 -2.24 16 7 C -0.07 -1.50 10.02 22.21 0.22 -1.28 16 8 C -0.20 -5.75 8.24 22.42 0.18 -5.56 16 9 C 0.11 4.12 6.59 22.47 0.15 4.26 16 10 O -0.33 -14.56 9.55 -92.54 -0.88 -15.44 16 11 C 0.09 3.92 2.17 30.59 0.07 3.99 16 12 H 0.07 2.78 6.31 -2.39 -0.02 2.77 16 13 C -0.17 -5.49 9.17 71.98 0.66 -4.83 16 14 C 0.03 1.46 4.68 29.85 0.14 1.60 16 15 C -0.53 -31.14 8.88 25.60 0.23 -30.91 16 16 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 17 C 0.01 0.32 5.46 84.65 0.46 0.78 16 18 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 19 Si 0.96 45.77 29.54 68.60 2.03 47.79 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 23 C -0.15 -5.21 9.51 22.64 0.22 -4.99 16 24 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.32 7.35 -2.39 -0.02 1.30 16 26 H 0.11 1.17 6.47 -2.39 -0.02 1.16 16 27 H 0.42 6.39 9.28 -74.05 -0.69 5.71 16 28 H 0.17 1.88 6.35 -2.91 -0.02 1.86 16 29 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.14 3.72 5.40 -2.91 -0.02 3.71 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 2.07 6.90 -2.38 -0.02 2.05 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.11 4.38 7.55 -2.91 -0.02 4.36 16 Total: -1.00 -74.16 315.45 4.22 -69.94 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.40 Total: 13.22 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 3.40 Total: -37.14 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -0.20 Total: -68.09 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -1.42 Total: -25.73 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -74.16 4.22 -69.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.407 kcal (2) G-P(sol) polarization free energy of solvation -74.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds