Wall clock time and date at job start Mon Mar 30 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29406 * 119.99788 * 2 1 4 4 O 1.41602 * 120.00456 * 0.02562 * 3 2 1 5 5 C 1.47474 * 119.99961 * 180.02562 * 2 1 3 6 6 C 1.39639 * 120.18615 * 359.97171 * 5 2 1 7 7 C 1.37880 * 119.90491 * 180.02562 * 6 5 2 8 8 C 1.38477 * 120.28027 * 0.02562 * 7 6 5 9 9 C 1.38156 * 120.37345 * 359.67443 * 8 7 6 10 10 C 1.38591 * 120.09112 * 0.60600 * 9 8 7 11 11 O 1.35761 * 120.13925 * 179.70149 * 10 9 8 12 12 C 1.42901 * 117.00344 * 354.50838 * 11 10 9 13 13 H 1.09003 * 109.46495 * 324.95500 * 12 11 10 14 14 C 1.52994 * 109.47078 * 84.94964 * 12 11 10 15 15 C 1.52993 * 109.47154 * 204.95487 * 12 11 10 16 16 C 1.50698 * 109.47398 * 64.99778 * 15 12 11 17 17 H 1.07995 * 120.00198 * 359.97438 * 16 15 12 18 18 C 1.37888 * 120.00075 * 179.72388 * 16 15 12 19 19 N 1.31507 * 119.99620 * 0.27624 * 18 16 15 20 20 Si 1.86795 * 119.99920 * 180.27645 * 18 16 15 21 21 H 1.48501 * 109.47088 * 90.00102 * 20 18 16 22 22 H 1.48501 * 109.47209 * 209.99987 * 20 18 16 23 23 H 1.48503 * 109.47382 * 330.00237 * 20 18 16 24 24 H 1.09005 * 109.47048 * 269.99403 * 1 2 3 25 25 H 1.09000 * 109.47621 * 29.99375 * 1 2 3 26 26 H 1.09003 * 109.47390 * 149.99804 * 1 2 3 27 27 H 0.96695 * 113.99992 * 179.97438 * 4 3 2 28 28 H 1.08005 * 120.05093 * 0.04245 * 6 5 2 29 29 H 1.08000 * 119.86250 * 179.97438 * 7 6 5 30 30 H 1.07995 * 119.81322 * 179.97438 * 8 7 6 31 31 H 1.08001 * 119.95073 * 180.30097 * 9 8 7 32 32 H 1.08999 * 109.47207 * 180.02562 * 14 12 11 33 33 H 1.08997 * 109.47355 * 300.00647 * 14 12 11 34 34 H 1.09004 * 109.46609 * 60.00201 * 14 12 11 35 35 H 1.09006 * 109.47188 * 304.99530 * 15 12 11 36 36 H 1.09003 * 109.47532 * 184.99970 * 15 12 11 37 37 H 0.97007 * 120.00012 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1539 1.1207 0.0000 4 8 1.4460 2.3471 0.0005 5 6 2.2443 -1.2772 -0.0006 6 6 1.5500 -2.4887 -0.0005 7 6 2.2453 -3.6794 -0.0005 8 6 3.6301 -3.6794 0.0000 9 6 4.3286 -2.4875 -0.0063 10 6 3.6455 -1.2817 -0.0005 11 8 4.3310 -0.1098 -0.0005 12 6 5.7530 -0.1900 0.1151 13 1 6.0181 -1.0225 0.7669 14 6 6.3656 -0.4112 -1.2693 15 6 6.2908 1.1136 0.7084 16 6 5.7843 1.2701 2.1191 17 1 5.1426 0.5155 2.5493 18 6 6.1443 2.3743 2.8624 19 7 6.9252 3.2935 2.3383 20 14 5.5227 2.5644 4.6136 21 1 6.4830 1.9291 5.5514 22 1 5.3939 4.0075 4.9393 23 1 4.1970 1.9077 4.7424 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8900 -0.5139 27 1 2.0144 3.1293 0.0009 28 1 0.4700 -2.4932 -0.0007 29 1 1.7076 -4.6161 -0.0001 30 1 4.1670 -4.6164 0.0004 31 1 5.4086 -2.4955 -0.0108 32 1 7.4502 -0.4728 -1.1811 33 1 5.9824 -1.3399 -1.6920 34 1 6.1004 0.4213 -1.9211 35 1 5.9506 1.9551 0.1048 36 1 7.3805 1.0879 0.7144 37 1 7.1782 4.0705 2.8611 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695890435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:23 Heat of formation + Delta-G solvation = -9.822586 kcal Electronic energy + Delta-G solvation = -20047.722642 eV Core-core repulsion = 16985.215980 eV Total energy + Delta-G solvation = -3062.506662 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.91651 -37.44750 -36.56188 -33.89963 -33.37165 -31.55968 -30.25625 -29.08845 -27.93859 -27.40889 -23.44459 -23.25605 -22.16661 -20.04427 -19.37862 -17.56916 -16.53266 -16.31731 -15.78838 -15.24593 -14.83763 -14.55334 -14.49841 -14.00914 -13.86505 -13.47894 -13.07174 -12.73241 -12.26252 -12.17657 -11.98773 -11.85600 -11.76128 -11.44092 -11.29645 -11.10502 -10.73431 -10.72008 -10.40543 -10.02508 -9.76115 -9.37452 -9.26563 -9.08149 -8.42774 -8.35335 -7.59480 -5.98471 -3.98286 1.12159 1.72285 2.76923 3.33466 3.39804 3.45863 3.51463 3.90578 4.10176 4.48947 4.69865 5.08363 5.12869 5.32823 5.38595 5.40902 5.52054 5.64897 5.68252 5.72416 5.77988 5.80020 5.98837 6.05228 6.21074 6.27377 6.45866 6.56739 6.62915 6.68636 6.80189 6.98467 7.23793 7.51774 7.63657 7.98370 8.16036 8.24181 8.40871 9.04443 9.64179 11.13072 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.016002 B = 0.007217 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.333933 B = 3878.780091 C = 4570.076528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.144 3.856 3 N -0.274 5.274 4 O -0.422 6.422 5 C -0.097 4.097 6 C -0.057 4.057 7 C -0.179 4.179 8 C -0.066 4.066 9 C -0.223 4.223 10 C 0.182 3.818 11 O -0.255 6.255 12 C 0.080 3.920 13 H 0.061 0.939 14 C -0.177 4.177 15 C 0.029 3.971 16 C -0.505 4.505 17 H 0.053 0.947 18 C 0.058 3.942 19 N -0.898 5.898 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.406 0.594 28 H 0.130 0.870 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.029 0.971 36 H 0.036 0.964 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 -11.435 -6.517 15.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.045 4.045 3 N -0.016 5.016 4 O -0.332 6.332 5 C -0.099 4.099 6 C -0.077 4.077 7 C -0.198 4.198 8 C -0.085 4.085 9 C -0.241 4.241 10 C 0.131 3.869 11 O -0.165 6.165 12 C 0.024 3.976 13 H 0.079 0.921 14 C -0.234 4.234 15 C -0.007 4.007 16 C -0.543 4.543 17 H 0.072 0.928 18 C -0.142 4.142 19 N -0.538 5.538 20 Si 0.717 3.283 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.255 0.745 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.152 0.848 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.647 -10.918 -6.494 15.366 hybrid contribution -0.483 0.356 1.075 1.231 sum -9.130 -10.562 -5.419 14.976 Atomic orbital electron populations 1.21182 0.92191 1.03331 1.03146 1.22964 0.93683 0.91116 0.96748 1.77278 1.21647 0.91040 1.11665 1.88225 1.35789 1.13984 1.95166 1.17570 0.89651 0.90780 1.11882 1.20967 0.99509 0.90482 0.96719 1.20788 0.94171 0.97489 1.07328 1.21018 0.94203 0.97307 0.95944 1.21371 1.00911 0.92012 1.09853 1.19391 0.91027 0.86571 0.89909 1.86511 1.21021 1.25117 1.83829 1.22951 0.76933 1.02854 0.94823 0.92092 1.22410 1.01240 1.01413 0.98351 1.19218 0.95833 0.89764 0.95917 1.21069 1.29339 1.06252 0.97649 0.92832 1.24933 0.95254 0.95872 0.98186 1.69947 1.36158 1.10710 1.36957 0.86632 0.79325 0.77193 0.85132 1.20761 1.21229 1.19947 0.90541 0.90620 0.90914 0.74496 0.85242 0.86017 0.86100 0.84839 0.91438 0.93346 0.91921 0.95221 0.94585 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.28 36.00 0.33 -1.54 16 2 C 0.14 2.55 7.11 -79.85 -0.57 1.98 16 3 N -0.27 -5.62 9.97 35.06 0.35 -5.27 16 4 O -0.42 -7.66 13.73 -11.47 -0.16 -7.82 16 5 C -0.10 -1.64 5.88 -104.91 -0.62 -2.26 16 6 C -0.06 -0.74 9.36 -39.19 -0.37 -1.11 16 7 C -0.18 -2.13 10.03 -39.62 -0.40 -2.53 16 8 C -0.07 -0.84 10.03 -39.52 -0.40 -1.24 16 9 C -0.22 -3.51 8.24 -39.48 -0.33 -3.83 16 10 C 0.18 3.39 6.61 -38.75 -0.26 3.14 16 11 O -0.26 -5.52 7.43 -18.99 -0.14 -5.67 16 12 C 0.08 1.67 2.17 -26.74 -0.06 1.61 16 13 H 0.06 1.23 6.32 -51.93 -0.33 0.91 16 14 C -0.18 -3.03 9.17 37.15 0.34 -2.69 16 15 C 0.03 0.76 4.68 -27.89 -0.13 0.62 16 16 C -0.50 -14.40 8.88 -34.44 -0.31 -14.71 16 17 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 20 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 1.04 7.35 -51.93 -0.38 0.66 16 26 H 0.07 0.76 6.48 -51.93 -0.34 0.42 16 27 H 0.41 6.16 9.28 45.56 0.42 6.59 16 28 H 0.13 1.30 6.36 -52.48 -0.33 0.96 16 29 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.13 2.00 5.42 -52.49 -0.28 1.72 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.73 6.91 -51.93 -0.36 0.37 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 313.18 15.07 4.72 4.72 Total: -1.00 -33.10 313.18 -6.46 -39.56 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.10 Total: 4.31 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -2.84 Total: -20.95 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 1.09 Total: -31.45 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.30 Total: -13.48 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.10 -6.46 -39.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695890435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.740 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds