Wall clock time and date at job start Mon Mar 30 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29406 * 119.99788 * 2 1 4 4 O 1.41602 * 120.00456 * 0.02562 * 3 2 1 5 5 C 1.47474 * 119.99961 * 180.02562 * 2 1 3 6 6 C 1.39639 * 120.18615 * 359.97171 * 5 2 1 7 7 C 1.37880 * 119.90491 * 180.02562 * 6 5 2 8 8 C 1.38477 * 120.28027 * 0.02562 * 7 6 5 9 9 C 1.38156 * 120.37345 * 359.67443 * 8 7 6 10 10 C 1.38591 * 120.09112 * 0.60600 * 9 8 7 11 11 O 1.35761 * 120.13925 * 179.70149 * 10 9 8 12 12 C 1.42901 * 117.00344 * 354.50838 * 11 10 9 13 13 H 1.09003 * 109.46495 * 324.95500 * 12 11 10 14 14 C 1.52994 * 109.47078 * 84.94964 * 12 11 10 15 15 C 1.52993 * 109.47154 * 204.95487 * 12 11 10 16 16 C 1.50698 * 109.47398 * 64.99778 * 15 12 11 17 17 H 1.07995 * 120.00198 * 359.97438 * 16 15 12 18 18 C 1.37888 * 120.00075 * 179.72388 * 16 15 12 19 19 N 1.31507 * 119.99620 * 0.27624 * 18 16 15 20 20 Si 1.86795 * 119.99920 * 180.27645 * 18 16 15 21 21 H 1.48501 * 109.47088 * 90.00102 * 20 18 16 22 22 H 1.48501 * 109.47209 * 209.99987 * 20 18 16 23 23 H 1.48503 * 109.47382 * 330.00237 * 20 18 16 24 24 H 1.09005 * 109.47048 * 269.99403 * 1 2 3 25 25 H 1.09000 * 109.47621 * 29.99375 * 1 2 3 26 26 H 1.09003 * 109.47390 * 149.99804 * 1 2 3 27 27 H 0.96695 * 113.99992 * 179.97438 * 4 3 2 28 28 H 1.08005 * 120.05093 * 0.04245 * 6 5 2 29 29 H 1.08000 * 119.86250 * 179.97438 * 7 6 5 30 30 H 1.07995 * 119.81322 * 179.97438 * 8 7 6 31 31 H 1.08001 * 119.95073 * 180.30097 * 9 8 7 32 32 H 1.08999 * 109.47207 * 180.02562 * 14 12 11 33 33 H 1.08997 * 109.47355 * 300.00647 * 14 12 11 34 34 H 1.09004 * 109.46609 * 60.00201 * 14 12 11 35 35 H 1.09006 * 109.47188 * 304.99530 * 15 12 11 36 36 H 1.09003 * 109.47532 * 184.99970 * 15 12 11 37 37 H 0.97007 * 120.00012 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1539 1.1207 0.0000 4 8 1.4460 2.3471 0.0005 5 6 2.2443 -1.2772 -0.0006 6 6 1.5500 -2.4887 -0.0005 7 6 2.2453 -3.6794 -0.0005 8 6 3.6301 -3.6794 0.0000 9 6 4.3286 -2.4875 -0.0063 10 6 3.6455 -1.2817 -0.0005 11 8 4.3310 -0.1098 -0.0005 12 6 5.7530 -0.1900 0.1151 13 1 6.0181 -1.0225 0.7669 14 6 6.3656 -0.4112 -1.2693 15 6 6.2908 1.1136 0.7084 16 6 5.7843 1.2701 2.1191 17 1 5.1426 0.5155 2.5493 18 6 6.1443 2.3743 2.8624 19 7 6.9252 3.2935 2.3383 20 14 5.5227 2.5644 4.6136 21 1 6.4830 1.9291 5.5514 22 1 5.3939 4.0075 4.9393 23 1 4.1970 1.9077 4.7424 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8900 -0.5139 27 1 2.0144 3.1293 0.0009 28 1 0.4700 -2.4932 -0.0007 29 1 1.7076 -4.6161 -0.0001 30 1 4.1670 -4.6164 0.0004 31 1 5.4086 -2.4955 -0.0108 32 1 7.4502 -0.4728 -1.1811 33 1 5.9824 -1.3399 -1.6920 34 1 6.1004 0.4213 -1.9211 35 1 5.9506 1.9551 0.1048 36 1 7.3805 1.0879 0.7144 37 1 7.1782 4.0705 2.8611 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695890435.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:23 Heat of formation + Delta-G solvation = -31.845971 kcal Electronic energy + Delta-G solvation = -20048.677647 eV Core-core repulsion = 16985.215980 eV Total energy + Delta-G solvation = -3063.461668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.19673 -38.80721 -37.85113 -35.45775 -35.08946 -33.36595 -31.40956 -30.28248 -29.42333 -29.02669 -25.33932 -24.43025 -23.58373 -21.51373 -20.68127 -18.92274 -18.52361 -17.85565 -17.10482 -16.63241 -16.34081 -16.14324 -15.79128 -15.36308 -15.17172 -14.62539 -14.55051 -14.24355 -13.78257 -13.66208 -13.47516 -13.37159 -13.13016 -12.96751 -12.71305 -12.69035 -12.43474 -12.30665 -11.93106 -11.71763 -11.29306 -11.06687 -11.01586 -10.62515 -10.55811 -9.59064 -8.86743 -8.21715 -6.28672 -0.02693 0.60066 1.32597 1.34451 1.45340 1.54731 2.25653 2.37458 2.52309 2.97302 3.12974 3.54138 3.98537 4.04673 4.16354 4.23779 4.29255 4.39940 4.45308 4.52487 4.65381 4.67630 4.71085 4.82291 5.01969 5.04300 5.16814 5.20933 5.36058 5.40206 5.51459 5.54993 5.62195 5.75986 5.96748 6.00517 6.19741 6.75127 6.82184 6.95601 7.37387 8.90157 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.016002 B = 0.007217 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.333933 B = 3878.780091 C = 4570.076528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.145 3.855 3 N -0.336 5.336 4 O -0.428 6.428 5 C -0.126 4.126 6 C -0.047 4.047 7 C -0.165 4.165 8 C -0.058 4.058 9 C -0.236 4.236 10 C 0.140 3.860 11 O -0.287 6.287 12 C 0.088 3.912 13 H 0.064 0.936 14 C -0.165 4.165 15 C 0.035 3.965 16 C -0.518 4.518 17 H 0.043 0.957 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.954 3.046 21 H -0.267 1.267 22 H -0.279 1.279 23 H -0.278 1.278 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.411 0.589 28 H 0.166 0.834 29 H 0.166 0.834 30 H 0.156 0.844 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.050 0.950 35 H -0.005 1.005 36 H 0.023 0.977 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.757 -14.728 -6.163 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.044 4.044 3 N -0.080 5.080 4 O -0.337 6.337 5 C -0.128 4.128 6 C -0.066 4.066 7 C -0.183 4.183 8 C -0.076 4.076 9 C -0.255 4.255 10 C 0.091 3.909 11 O -0.198 6.198 12 C 0.032 3.968 13 H 0.082 0.918 14 C -0.222 4.222 15 C -0.002 4.002 16 C -0.556 4.556 17 H 0.061 0.939 18 C -0.191 4.191 19 N -0.570 5.570 20 Si 0.779 3.221 21 H -0.192 1.192 22 H -0.204 1.204 23 H -0.203 1.203 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.128 0.872 27 H 0.261 0.739 28 H 0.183 0.817 29 H 0.183 0.817 30 H 0.174 0.826 31 H 0.151 0.849 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.013 0.987 36 H 0.041 0.959 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.375 -14.222 -6.145 18.645 hybrid contribution -0.030 1.217 0.936 1.536 sum -10.405 -13.005 -5.209 17.450 Atomic orbital electron populations 1.21240 0.89191 1.04763 1.04105 1.23621 0.96013 0.90755 0.93985 1.77282 1.23372 0.92190 1.15152 1.88162 1.35974 1.14081 1.95513 1.18004 0.89330 0.91907 1.13549 1.21428 1.01279 0.89255 0.94682 1.21348 0.93935 0.98717 1.04315 1.21489 0.95062 0.97403 0.93682 1.21510 1.01159 0.92232 1.10603 1.19846 0.91978 0.86495 0.92580 1.86436 1.20638 1.27485 1.85209 1.22612 0.77838 0.99748 0.96585 0.91816 1.22288 1.01848 1.02083 0.95977 1.19029 0.95015 0.91490 0.94646 1.21320 1.29053 1.06173 0.99039 0.93883 1.25750 0.95431 0.95555 1.02350 1.70057 1.37189 1.11223 1.38571 0.85619 0.78635 0.77438 0.80382 1.19197 1.20431 1.20322 0.89582 0.91409 0.87234 0.73926 0.81697 0.81658 0.82595 0.84906 0.90083 0.90928 0.93066 0.98667 0.95934 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.28 71.23 0.66 -2.70 16 2 C 0.14 5.11 7.11 45.35 0.32 5.43 16 3 N -0.34 -14.42 9.97 -42.98 -0.43 -14.85 16 4 O -0.43 -16.41 13.73 -38.79 -0.53 -16.94 16 5 C -0.13 -4.12 5.88 -20.05 -0.12 -4.23 16 6 C -0.05 -1.03 9.36 22.52 0.21 -0.82 16 7 C -0.17 -3.05 10.03 22.24 0.22 -2.83 16 8 C -0.06 -1.24 10.03 22.31 0.22 -1.01 16 9 C -0.24 -7.08 8.24 22.33 0.18 -6.89 16 10 C 0.14 5.24 6.61 22.81 0.15 5.39 16 11 O -0.29 -12.95 7.43 -90.87 -0.68 -13.63 16 12 C 0.09 3.83 2.17 30.59 0.07 3.89 16 13 H 0.06 2.66 6.32 -2.39 -0.02 2.65 16 14 C -0.16 -5.73 9.17 71.98 0.66 -5.07 16 15 C 0.04 1.91 4.68 29.85 0.14 2.05 16 16 C -0.52 -30.77 8.88 25.60 0.23 -30.54 16 17 H 0.04 2.59 7.74 -2.91 -0.02 2.57 16 18 C 0.01 0.40 5.46 84.66 0.46 0.86 16 19 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 20 Si 0.95 46.68 29.54 68.60 2.03 48.71 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 24 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.07 1.80 7.35 -2.39 -0.02 1.79 16 26 H 0.11 1.85 6.48 -2.39 -0.02 1.84 16 27 H 0.41 13.70 9.28 -74.06 -0.69 13.01 16 28 H 0.17 2.37 6.36 -2.91 -0.02 2.36 16 29 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 30 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.13 3.86 5.42 -2.91 -0.02 3.84 16 32 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.07 2.15 6.91 -2.39 -0.02 2.13 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 36 H 0.02 1.25 8.14 -2.39 -0.02 1.24 16 37 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -76.08 313.18 4.49 -71.60 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: 0.40 Total: 18.76 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 3.41 Total: -36.48 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -0.14 Total: -72.01 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -1.21 Total: -30.57 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -76.08 4.49 -71.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695890435.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.752 kcal (2) G-P(sol) polarization free energy of solvation -76.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds