Wall clock time and date at job start Mon Mar 30 2020 06:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21303 * 120.00488 * 2 1 4 4 C 1.46799 * 120.00073 * 179.97438 * 2 1 3 5 5 C 1.40020 * 120.18614 * 0.21604 * 4 2 1 6 6 C 1.38284 * 119.80218 * 180.27061 * 5 4 2 7 7 N 1.39956 * 119.90955 * 179.71970 * 6 5 4 8 8 C 1.39211 * 120.18353 * 359.74622 * 6 5 4 9 9 C 1.37989 * 120.38596 * 0.02562 * 8 6 5 10 10 C 1.38673 * 120.19711 * 359.97438 * 9 8 6 11 11 O 1.35685 * 120.09714 * 179.97438 * 10 9 8 12 12 C 1.42897 * 117.00175 * 5.41132 * 11 10 9 13 13 H 1.09004 * 109.47162 * 35.22438 * 12 11 10 14 14 C 1.52993 * 109.47352 * 275.22559 * 12 11 10 15 15 C 1.53002 * 109.47247 * 155.22170 * 12 11 10 16 16 C 1.50697 * 109.47502 * 295.00354 * 15 12 11 17 17 H 1.08003 * 119.99983 * 359.97438 * 16 15 12 18 18 C 1.37875 * 120.00139 * 180.27298 * 16 15 12 19 19 N 1.31512 * 120.00207 * 179.72104 * 18 16 15 20 20 Si 1.86806 * 119.99924 * 359.72530 * 18 16 15 21 21 H 1.48498 * 109.46860 * 89.99700 * 20 18 16 22 22 H 1.48498 * 109.46995 * 209.99812 * 20 18 16 23 23 H 1.48495 * 109.46806 * 330.00012 * 20 18 16 24 24 H 1.08995 * 109.47317 * 270.00260 * 1 2 3 25 25 H 1.09006 * 109.46843 * 30.00007 * 1 2 3 26 26 H 1.09001 * 109.47460 * 149.99709 * 1 2 3 27 27 H 1.08001 * 120.09863 * 0.04344 * 5 4 2 28 28 H 0.97002 * 120.00250 * 180.02562 * 7 6 5 29 29 H 0.97000 * 120.00351 * 0.02843 * 7 6 5 30 30 H 1.08003 * 119.80231 * 179.97438 * 8 6 5 31 31 H 1.08005 * 119.90411 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.46888 * 300.00046 * 14 12 11 33 33 H 1.09006 * 109.46789 * 59.99916 * 14 12 11 34 34 H 1.08998 * 109.47705 * 179.97438 * 14 12 11 35 35 H 1.09003 * 109.46792 * 174.99777 * 15 12 11 36 36 H 1.09006 * 109.46721 * 55.00523 * 15 12 11 37 37 H 0.97003 * 120.00076 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2713 0.0006 5 6 1.5448 -2.4862 -0.0035 6 6 2.2442 -3.6791 0.0028 7 7 1.5506 -4.8947 0.0047 8 6 3.6363 -3.6742 0.0077 9 6 4.3301 -2.4814 0.0069 10 6 3.6448 -1.2759 0.0007 11 8 4.3291 -0.1042 0.0005 12 6 5.7513 -0.1835 -0.1132 13 1 6.0178 -1.0145 -0.7664 14 6 6.3620 -0.4073 1.2716 15 6 6.2894 1.1216 -0.7031 16 6 5.7849 1.2809 -2.1141 17 1 5.1448 0.5264 -2.5472 18 6 6.1454 2.3867 -2.8545 19 7 5.7096 2.5230 -4.0878 20 14 7.2530 3.6914 -2.1058 21 1 8.6725 3.3528 -2.3810 22 1 6.9346 5.0131 -2.7031 23 1 7.0325 3.7451 -0.6383 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8899 -0.5139 27 1 0.4648 -2.4916 -0.0077 28 1 2.0399 -5.7323 0.0095 29 1 0.5807 -4.8997 0.0013 30 1 4.1763 -4.6095 0.0130 31 1 5.4101 -2.4867 0.0112 32 1 6.0955 0.4236 1.9248 33 1 5.9787 -1.3372 1.6917 34 1 7.4468 -0.4683 1.1848 35 1 7.3791 1.0963 -0.7075 36 1 5.9479 1.9617 -0.0981 37 1 5.9629 3.3012 -4.6086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695906613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:35 Heat of formation + Delta-G solvation = -51.296909 kcal Electronic energy + Delta-G solvation = -19904.457717 eV Core-core repulsion = 16840.152594 eV Total energy + Delta-G solvation = -3064.305124 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.13881 -38.20280 -37.65361 -34.03398 -32.98473 -31.77691 -31.51440 -29.00658 -27.94333 -27.57611 -23.79543 -23.18497 -21.86069 -20.04420 -19.46610 -17.67932 -16.82447 -16.64921 -16.52752 -15.02258 -14.83202 -14.76909 -14.57234 -14.38409 -14.03164 -13.64384 -13.04244 -12.79269 -12.74521 -12.31188 -12.16328 -11.89265 -11.85302 -11.76048 -11.74446 -11.41270 -10.95898 -10.62606 -10.40777 -9.77698 -9.67448 -9.30073 -9.10887 -9.09223 -8.81325 -8.44095 -6.96833 -5.93116 -3.89567 0.99953 1.85408 2.89388 3.36505 3.44833 3.49549 3.83837 3.98194 4.12881 4.45324 4.54144 4.95867 5.09121 5.34902 5.40256 5.41290 5.57181 5.58914 5.62597 5.67695 5.70298 5.88437 5.98803 6.04161 6.17656 6.25661 6.36557 6.47054 6.58739 6.67532 6.79717 7.11285 7.30532 7.51740 7.78346 7.83359 8.12442 8.21804 8.62965 9.12070 9.67989 11.20845 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021669 B = 0.005944 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.838261 B = 4709.212242 C = 5242.838570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.380 3.620 3 O -0.420 6.420 4 C -0.170 4.170 5 C -0.118 4.118 6 C 0.149 3.851 7 N -0.888 5.888 8 C -0.120 4.120 9 C -0.183 4.183 10 C 0.157 3.843 11 O -0.261 6.261 12 C 0.090 3.910 13 H 0.066 0.934 14 C -0.180 4.180 15 C -0.010 4.010 16 C -0.507 4.507 17 H 0.071 0.929 18 C 0.067 3.933 19 N -0.904 5.904 20 Si 0.877 3.123 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.265 1.265 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.131 0.869 28 H 0.394 0.606 29 H 0.394 0.606 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.031 0.969 36 H 0.030 0.970 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 -14.370 10.821 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.255 3.745 3 O -0.292 6.292 4 C -0.172 4.172 5 C -0.141 4.141 6 C 0.048 3.952 7 N -0.430 5.430 8 C -0.143 4.143 9 C -0.203 4.203 10 C 0.107 3.893 11 O -0.171 6.171 12 C 0.034 3.966 13 H 0.084 0.916 14 C -0.237 4.237 15 C -0.047 4.047 16 C -0.545 4.545 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.543 5.543 20 Si 0.704 3.296 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.189 1.189 24 H 0.107 0.893 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.148 0.852 28 H 0.221 0.779 29 H 0.221 0.779 30 H 0.139 0.861 31 H 0.153 0.847 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.864 -13.374 10.680 18.835 hybrid contribution 0.514 0.005 0.153 0.536 sum -7.350 -13.369 10.833 18.711 Atomic orbital electron populations 1.22193 0.94810 1.04330 1.03867 1.22107 0.90953 0.87892 0.73533 1.90700 1.71492 1.33506 1.33543 1.19686 0.90987 0.95041 1.11524 1.20580 0.99073 0.89611 1.04844 1.17449 0.91196 0.86430 1.00169 1.42259 1.08372 1.04575 1.87825 1.20552 0.92025 0.97909 1.03801 1.21165 1.00665 0.91482 1.06939 1.19242 0.90925 0.86218 0.92928 1.86449 1.20595 1.25392 1.84694 1.22620 0.77445 1.01823 0.94706 0.91589 1.22453 1.01190 1.01716 0.98366 1.19701 0.95485 0.91880 0.97601 1.20967 1.30349 1.07771 0.95414 0.91043 1.24971 0.96013 0.97716 0.94687 1.69912 1.45773 1.29454 1.09166 0.86826 0.80946 0.81602 0.80230 1.20405 1.21327 1.18939 0.89290 0.89776 0.90192 0.85169 0.77875 0.77861 0.86076 0.84654 0.91859 0.93002 0.91419 0.95128 0.95209 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 9.75 36.00 0.35 -1.99 16 2 C 0.38 6.79 7.22 -30.85 -0.22 6.57 16 3 O -0.42 -9.74 15.90 -16.42 -0.26 -10.00 16 4 C -0.17 -2.92 5.88 -104.96 -0.62 -3.54 16 5 C -0.12 -1.54 9.20 -38.90 -0.36 -1.90 16 6 C 0.15 1.81 6.74 -83.77 -0.57 1.24 16 7 N -0.89 -7.29 9.10 32.41 0.29 -6.99 16 8 C -0.12 -1.58 9.87 -39.31 -0.39 -1.96 16 9 C -0.18 -2.93 8.22 -39.51 -0.32 -3.25 16 10 C 0.16 3.02 6.62 -38.61 -0.26 2.77 16 11 O -0.26 -5.95 7.62 -40.72 -0.31 -6.26 16 12 C 0.09 1.90 2.17 -26.73 -0.06 1.84 16 13 H 0.07 1.35 6.32 -51.93 -0.33 1.02 16 14 C -0.18 -3.00 9.17 37.15 0.34 -2.66 16 15 C -0.01 -0.24 3.75 -27.88 -0.10 -0.34 16 16 C -0.51 -15.24 9.43 -34.44 -0.32 -15.56 16 17 H 0.07 2.35 7.99 -52.48 -0.42 1.93 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -29.09 13.96 55.43 0.77 -28.32 16 20 Si 0.88 22.58 27.46 -169.99 -4.67 17.91 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 23 H -0.26 -6.61 6.55 56.52 0.37 -6.24 16 24 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.08 0.76 6.46 -51.93 -0.34 0.42 16 27 H 0.13 1.27 6.35 -52.49 -0.33 0.94 16 28 H 0.39 2.54 8.84 -40.82 -0.36 2.18 16 29 H 0.39 2.47 8.84 -40.82 -0.36 2.11 16 30 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 31 H 0.14 2.03 5.41 -52.48 -0.28 1.75 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.76 6.89 -51.93 -0.36 0.40 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.03 0.72 7.56 -51.93 -0.39 0.33 16 36 H 0.03 0.78 7.21 -51.93 -0.37 0.40 16 37 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 309.09 15.07 4.66 4.66 Total: -1.00 -36.49 309.09 -6.96 -43.46 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.83 Total: 2.40 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -2.62 Total: -16.85 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 1.07 Total: -35.31 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.57 Total: -16.26 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.67 Total: 17.91 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -36.49 -6.96 -43.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695906613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.840 kcal (2) G-P(sol) polarization free energy of solvation -36.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds