Wall clock time and date at job start Mon Mar 30 2020 06:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21303 * 120.00488 * 2 1 4 4 C 1.46799 * 120.00073 * 179.97438 * 2 1 3 5 5 C 1.40020 * 120.18614 * 0.21604 * 4 2 1 6 6 C 1.38284 * 119.80218 * 180.27061 * 5 4 2 7 7 N 1.39956 * 119.90955 * 179.71970 * 6 5 4 8 8 C 1.39211 * 120.18353 * 359.74622 * 6 5 4 9 9 C 1.37989 * 120.38596 * 0.02562 * 8 6 5 10 10 C 1.38673 * 120.19711 * 359.97438 * 9 8 6 11 11 O 1.35685 * 120.09714 * 179.97438 * 10 9 8 12 12 C 1.42897 * 117.00175 * 5.41132 * 11 10 9 13 13 H 1.09004 * 109.47162 * 35.22438 * 12 11 10 14 14 C 1.52993 * 109.47352 * 275.22559 * 12 11 10 15 15 C 1.53002 * 109.47247 * 155.22170 * 12 11 10 16 16 C 1.50697 * 109.47502 * 295.00354 * 15 12 11 17 17 H 1.08003 * 119.99983 * 359.97438 * 16 15 12 18 18 C 1.37875 * 120.00139 * 180.27298 * 16 15 12 19 19 N 1.31512 * 120.00207 * 179.72104 * 18 16 15 20 20 Si 1.86806 * 119.99924 * 359.72530 * 18 16 15 21 21 H 1.48498 * 109.46860 * 89.99700 * 20 18 16 22 22 H 1.48498 * 109.46995 * 209.99812 * 20 18 16 23 23 H 1.48495 * 109.46806 * 330.00012 * 20 18 16 24 24 H 1.08995 * 109.47317 * 270.00260 * 1 2 3 25 25 H 1.09006 * 109.46843 * 30.00007 * 1 2 3 26 26 H 1.09001 * 109.47460 * 149.99709 * 1 2 3 27 27 H 1.08001 * 120.09863 * 0.04344 * 5 4 2 28 28 H 0.97002 * 120.00250 * 180.02562 * 7 6 5 29 29 H 0.97000 * 120.00351 * 0.02843 * 7 6 5 30 30 H 1.08003 * 119.80231 * 179.97438 * 8 6 5 31 31 H 1.08005 * 119.90411 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.46888 * 300.00046 * 14 12 11 33 33 H 1.09006 * 109.46789 * 59.99916 * 14 12 11 34 34 H 1.08998 * 109.47705 * 179.97438 * 14 12 11 35 35 H 1.09003 * 109.46792 * 174.99777 * 15 12 11 36 36 H 1.09006 * 109.46721 * 55.00523 * 15 12 11 37 37 H 0.97003 * 120.00076 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2713 0.0006 5 6 1.5448 -2.4862 -0.0035 6 6 2.2442 -3.6791 0.0028 7 7 1.5506 -4.8947 0.0047 8 6 3.6363 -3.6742 0.0077 9 6 4.3301 -2.4814 0.0069 10 6 3.6448 -1.2759 0.0007 11 8 4.3291 -0.1042 0.0005 12 6 5.7513 -0.1835 -0.1132 13 1 6.0178 -1.0145 -0.7664 14 6 6.3620 -0.4073 1.2716 15 6 6.2894 1.1216 -0.7031 16 6 5.7849 1.2809 -2.1141 17 1 5.1448 0.5264 -2.5472 18 6 6.1454 2.3867 -2.8545 19 7 5.7096 2.5230 -4.0878 20 14 7.2530 3.6914 -2.1058 21 1 8.6725 3.3528 -2.3810 22 1 6.9346 5.0131 -2.7031 23 1 7.0325 3.7451 -0.6383 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8899 -0.5139 27 1 0.4648 -2.4916 -0.0077 28 1 2.0399 -5.7323 0.0095 29 1 0.5807 -4.8997 0.0013 30 1 4.1763 -4.6095 0.0130 31 1 5.4101 -2.4867 0.0112 32 1 6.0955 0.4236 1.9248 33 1 5.9787 -1.3372 1.6917 34 1 7.4468 -0.4683 1.1848 35 1 7.3791 1.0963 -0.7075 36 1 5.9479 1.9617 -0.0981 37 1 5.9629 3.3012 -4.6086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695906613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:34 Heat of formation + Delta-G solvation = -77.385442 kcal Electronic energy + Delta-G solvation = -19905.589001 eV Core-core repulsion = 16840.152594 eV Total energy + Delta-G solvation = -3065.436407 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.42875 -39.67947 -38.87803 -35.59801 -34.58145 -33.40570 -32.90956 -30.18463 -29.71650 -28.69509 -25.01167 -24.95473 -23.33838 -21.51455 -20.75854 -19.11791 -18.86324 -17.86295 -17.67137 -16.48276 -16.30167 -16.02938 -15.85926 -15.83913 -15.43156 -15.19252 -14.63847 -14.33252 -14.02175 -13.82335 -13.56519 -13.46044 -13.32158 -12.99639 -12.93441 -12.77393 -12.49548 -12.27652 -12.06000 -11.72709 -11.44963 -11.32437 -10.77723 -10.53985 -10.47508 -9.97209 -8.28951 -8.03429 -6.31650 -0.19482 0.67398 1.31125 1.36483 1.48231 1.64119 2.35523 2.52620 2.94915 3.06815 3.08021 3.32950 3.86540 3.95028 4.09492 4.17450 4.31472 4.35355 4.41112 4.59502 4.63147 4.70608 4.77661 4.93345 4.94933 5.02297 5.05796 5.15633 5.23217 5.29056 5.37079 5.51146 5.61880 5.72861 6.24291 6.64520 6.70905 6.79132 6.87331 7.17949 7.29740 8.89063 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021669 B = 0.005944 C = 0.005339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.838261 B = 4709.212242 C = 5242.838570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.371 3.629 3 O -0.495 6.495 4 C -0.196 4.196 5 C -0.111 4.111 6 C 0.162 3.838 7 N -0.867 5.867 8 C -0.118 4.118 9 C -0.191 4.191 10 C 0.105 3.895 11 O -0.302 6.302 12 C 0.089 3.911 13 H 0.062 0.938 14 C -0.166 4.166 15 C -0.008 4.008 16 C -0.516 4.516 17 H 0.019 0.981 18 C 0.000 4.000 19 N -0.954 5.954 20 Si 0.954 3.046 21 H -0.253 1.253 22 H -0.285 1.285 23 H -0.253 1.253 24 H 0.119 0.881 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.169 0.831 28 H 0.407 0.593 29 H 0.408 0.592 30 H 0.155 0.845 31 H 0.138 0.862 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.016 0.984 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.609 -16.748 12.588 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.252 3.748 3 O -0.373 6.373 4 C -0.198 4.198 5 C -0.134 4.134 6 C 0.058 3.942 7 N -0.411 5.411 8 C -0.141 4.141 9 C -0.210 4.210 10 C 0.056 3.944 11 O -0.215 6.215 12 C 0.033 3.967 13 H 0.080 0.920 14 C -0.223 4.223 15 C -0.046 4.046 16 C -0.554 4.554 17 H 0.038 0.962 18 C -0.196 4.196 19 N -0.595 5.595 20 Si 0.776 3.224 21 H -0.178 1.178 22 H -0.210 1.210 23 H -0.176 1.176 24 H 0.137 0.863 25 H 0.097 0.903 26 H 0.131 0.869 27 H 0.186 0.814 28 H 0.237 0.763 29 H 0.238 0.762 30 H 0.172 0.828 31 H 0.156 0.844 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.324 -15.847 12.461 21.810 hybrid contribution 0.458 0.492 -0.456 0.812 sum -7.866 -15.354 12.006 21.018 Atomic orbital electron populations 1.22204 0.90064 1.05713 1.06120 1.23153 0.93700 0.87230 0.70766 1.90666 1.73418 1.35750 1.37429 1.20028 0.90692 0.96444 1.12665 1.20897 1.00809 0.88276 1.03369 1.17568 0.91137 0.87584 0.97879 1.42222 1.09247 1.03626 1.85996 1.20908 0.92808 0.98023 1.02334 1.21261 1.00973 0.91481 1.07327 1.19747 0.92053 0.86208 0.96394 1.86358 1.20958 1.28062 1.86117 1.22504 0.77927 0.99220 0.97085 0.91964 1.22326 1.02259 1.02445 0.95269 1.19657 0.96645 0.93919 0.94334 1.21224 1.29451 1.06753 0.97994 0.96237 1.26046 0.97979 1.00493 0.95075 1.70084 1.47784 1.30636 1.11027 0.85614 0.79413 0.77680 0.79671 1.17770 1.21032 1.17643 0.86291 0.90256 0.86866 0.81363 0.76338 0.76194 0.82776 0.84449 0.92496 0.90969 0.89073 0.92911 0.96600 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.17 9.75 71.23 0.69 -3.48 16 2 C 0.37 13.78 7.22 27.92 0.20 13.99 16 3 O -0.49 -24.84 15.90 17.90 0.28 -24.55 16 4 C -0.20 -6.83 5.88 -20.08 -0.12 -6.95 16 5 C -0.11 -2.61 9.20 22.71 0.21 -2.40 16 6 C 0.16 3.39 6.74 38.09 0.26 3.64 16 7 N -0.87 -10.08 9.10 -51.39 -0.47 -10.55 16 8 C -0.12 -2.80 9.87 22.44 0.22 -2.58 16 9 C -0.19 -6.10 8.22 22.31 0.18 -5.92 16 10 C 0.10 4.21 6.62 22.90 0.15 4.36 16 11 O -0.30 -14.77 7.62 -69.04 -0.53 -15.29 16 12 C 0.09 3.89 2.17 30.59 0.07 3.96 16 13 H 0.06 2.68 6.32 -2.38 -0.02 2.67 16 14 C -0.17 -5.45 9.17 71.98 0.66 -4.79 16 15 C -0.01 -0.43 3.75 29.85 0.11 -0.32 16 16 C -0.52 -32.83 9.43 25.60 0.24 -32.59 16 17 H 0.02 1.38 7.99 -2.91 -0.02 1.36 16 18 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 19 N -0.95 -64.23 13.96 21.45 0.30 -63.93 16 20 Si 0.95 47.53 27.46 68.60 1.88 49.41 16 21 H -0.25 -11.57 7.11 99.48 0.71 -10.87 16 22 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.25 -12.00 6.55 99.48 0.65 -11.35 16 24 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.11 1.76 6.46 -2.39 -0.02 1.74 16 27 H 0.17 2.52 6.35 -2.91 -0.02 2.50 16 28 H 0.41 3.21 8.84 -92.71 -0.82 2.39 16 29 H 0.41 2.97 8.84 -92.71 -0.82 2.15 16 30 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 31 H 0.14 4.14 5.41 -2.91 -0.02 4.13 16 32 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.07 2.05 6.89 -2.38 -0.02 2.03 16 34 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.05 2.46 7.56 -2.39 -0.02 2.45 16 36 H 0.02 0.85 7.21 -2.38 -0.02 0.83 16 37 H 0.27 16.55 8.31 -92.71 -0.77 15.78 16 Total: -1.00 -88.41 309.09 4.23 -84.18 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -0.59 Total: 13.36 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 3.34 Total: -32.62 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -0.17 Total: -74.48 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -0.24 Total: -39.85 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.88 Total: 49.41 kcal Total: -88.41 4.23 -84.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695906613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.794 kcal (2) G-P(sol) polarization free energy of solvation -88.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds