Wall clock time and date at job start Mon Mar 30 2020 06:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21304 * 120.00231 * 2 1 4 4 C 1.46787 * 120.00028 * 180.02562 * 2 1 3 5 5 C 1.40020 * 120.18872 * 0.20511 * 4 2 1 6 6 C 1.38297 * 119.80462 * 180.27268 * 5 4 2 7 7 N 1.39961 * 119.90810 * 179.72449 * 6 5 4 8 8 C 1.39208 * 120.18209 * 359.75136 * 6 5 4 9 9 C 1.37999 * 120.38608 * 0.02562 * 8 6 5 10 10 C 1.38668 * 120.19578 * 359.97438 * 9 8 6 11 11 O 1.35685 * 120.09446 * 179.97438 * 10 9 8 12 12 C 1.42900 * 117.00119 * 354.51597 * 11 10 9 13 13 H 1.08999 * 109.47302 * 324.92799 * 12 11 10 14 14 C 1.52994 * 109.46969 * 84.92997 * 12 11 10 15 15 C 1.53005 * 109.47110 * 204.93023 * 12 11 10 16 16 C 1.50698 * 109.47038 * 65.00124 * 15 12 11 17 17 H 1.08005 * 120.00055 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00152 * 179.72388 * 16 15 12 19 19 N 1.31517 * 119.99535 * 0.27594 * 18 16 15 20 20 Si 1.86795 * 120.00354 * 180.27383 * 18 16 15 21 21 H 1.48505 * 109.46747 * 90.00027 * 20 18 16 22 22 H 1.48494 * 109.47388 * 209.99874 * 20 18 16 23 23 H 1.48497 * 109.47020 * 330.00190 * 20 18 16 24 24 H 1.08993 * 109.47626 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46987 * 300.00086 * 1 2 3 26 26 H 1.08996 * 109.47507 * 59.99347 * 1 2 3 27 27 H 1.07997 * 120.10109 * 0.02562 * 5 4 2 28 28 H 0.97002 * 119.99700 * 180.02562 * 7 6 5 29 29 H 0.97000 * 119.99939 * 0.02562 * 7 6 5 30 30 H 1.07995 * 119.80487 * 180.02562 * 8 6 5 31 31 H 1.07997 * 119.90189 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47395 * 179.97438 * 14 12 11 33 33 H 1.09003 * 109.47327 * 300.00228 * 14 12 11 34 34 H 1.09005 * 109.47409 * 60.00165 * 14 12 11 35 35 H 1.08999 * 109.46955 * 305.00409 * 15 12 11 36 36 H 1.08996 * 109.46897 * 185.00036 * 15 12 11 37 37 H 0.97001 * 119.99814 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2712 -0.0006 5 6 1.5448 -2.4861 -0.0054 6 6 2.2442 -3.6791 -0.0002 7 7 1.5506 -4.8948 0.0007 8 6 3.6363 -3.6742 0.0046 9 6 4.3302 -2.4814 0.0048 10 6 3.6448 -1.2759 -0.0004 11 8 4.3291 -0.1042 0.0003 12 6 5.7502 -0.1829 0.1282 13 1 6.0104 -1.0121 0.7861 14 6 6.3744 -0.4101 -1.2500 15 6 6.2822 1.1239 0.7200 16 6 5.7638 1.2865 2.1256 17 1 5.1190 0.5333 2.5539 18 6 6.1168 2.3943 2.8667 19 7 6.9015 3.3117 2.3450 20 14 5.4805 2.5921 4.6118 21 1 6.4334 1.9618 5.5605 22 1 5.3481 4.0366 4.9297 23 1 4.1542 1.9351 4.7325 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.4648 -2.4916 -0.0092 28 1 2.0399 -5.7323 0.0048 29 1 0.5806 -4.8997 -0.0026 30 1 4.1764 -4.6094 0.0082 31 1 5.4101 -2.4867 0.0090 32 1 7.4584 -0.4697 -1.1526 33 1 5.9954 -1.3411 -1.6716 34 1 6.1142 0.4192 -1.9079 35 1 5.9464 1.9623 0.1096 36 1 7.3717 1.0988 0.7351 37 1 7.1496 4.0912 2.8662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695906615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:37 Heat of formation + Delta-G solvation = -53.758388 kcal Electronic energy + Delta-G solvation = -19901.132768 eV Core-core repulsion = 16836.720907 eV Total energy + Delta-G solvation = -3064.411861 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.12824 -38.18728 -37.62829 -34.00057 -33.01277 -31.79203 -31.36674 -28.97668 -27.67245 -27.29609 -23.80666 -23.31374 -22.00565 -20.06142 -19.47364 -17.65991 -16.82508 -16.51819 -16.24973 -15.03769 -14.79624 -14.73684 -14.57877 -14.47105 -14.01482 -13.78732 -12.99452 -12.88564 -12.56744 -12.27778 -11.88416 -11.83903 -11.78465 -11.69340 -11.40092 -11.23028 -10.89454 -10.66946 -10.47630 -10.07777 -9.56567 -9.25772 -9.10156 -8.94441 -8.82224 -8.27967 -6.96318 -5.91134 -3.90808 0.98938 1.85211 2.88297 3.39015 3.45021 3.51276 3.84951 4.01684 4.12853 4.43476 4.55605 4.93000 5.06601 5.31260 5.43884 5.46311 5.59332 5.60526 5.69083 5.71179 5.82846 5.95443 6.01761 6.06159 6.22527 6.28017 6.37109 6.58182 6.67581 6.77512 6.88449 7.47837 7.59173 7.72539 7.77158 8.05523 8.11927 8.27409 8.48523 9.11501 9.71288 11.20718 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.006165 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.598298 B = 4540.353745 C = 4996.927326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.379 3.621 3 O -0.420 6.420 4 C -0.173 4.173 5 C -0.119 4.119 6 C 0.147 3.853 7 N -0.888 5.888 8 C -0.120 4.120 9 C -0.184 4.184 10 C 0.157 3.843 11 O -0.261 6.261 12 C 0.081 3.919 13 H 0.061 0.939 14 C -0.177 4.177 15 C 0.027 3.973 16 C -0.506 4.506 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.891 3.109 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.131 0.869 28 H 0.394 0.606 29 H 0.394 0.606 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.037 0.963 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.794 -15.972 -6.501 20.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.255 3.745 3 O -0.292 6.292 4 C -0.175 4.175 5 C -0.142 4.142 6 C 0.046 3.954 7 N -0.431 5.431 8 C -0.142 4.142 9 C -0.203 4.203 10 C 0.107 3.893 11 O -0.171 6.171 12 C 0.025 3.975 13 H 0.078 0.922 14 C -0.234 4.234 15 C -0.009 4.009 16 C -0.544 4.544 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.538 5.538 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.149 0.851 28 H 0.221 0.779 29 H 0.221 0.779 30 H 0.139 0.861 31 H 0.154 0.846 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.390 -14.927 -6.477 19.306 hybrid contribution -0.353 -0.544 1.025 1.213 sum -10.742 -15.472 -5.452 19.609 Atomic orbital electron populations 1.22200 0.94922 1.03843 1.04387 1.22101 0.90914 0.87953 0.73572 1.90714 1.71404 1.33484 1.33639 1.19693 0.91042 0.95015 1.11770 1.20620 0.99041 0.89650 1.04923 1.17451 0.91195 0.86417 1.00324 1.42257 1.08349 1.04579 1.87885 1.20562 0.92014 0.97923 1.03747 1.21189 1.00743 0.91475 1.06915 1.19294 0.90937 0.86417 0.92656 1.86478 1.21134 1.25187 1.84344 1.22932 0.76967 1.02807 0.94770 0.92152 1.22417 1.01174 1.01372 0.98470 1.19238 0.95867 0.89824 0.96015 1.21079 1.29106 1.06208 0.98005 0.92801 1.24949 0.95261 0.95838 0.98296 1.69952 1.36197 1.10605 1.37044 0.86598 0.79342 0.77219 0.84933 1.20804 1.21208 1.19893 0.90496 0.89323 0.89454 0.85106 0.77882 0.77886 0.86101 0.84599 0.91437 0.93407 0.91857 0.95136 0.94529 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.33 10.19 36.00 0.37 -1.96 16 2 C 0.38 6.72 7.21 -30.86 -0.22 6.50 16 3 O -0.42 -9.70 15.90 -16.42 -0.26 -9.96 16 4 C -0.17 -2.95 5.88 -104.96 -0.62 -3.57 16 5 C -0.12 -1.55 9.28 -38.89 -0.36 -1.91 16 6 C 0.15 1.77 6.75 -83.76 -0.57 1.21 16 7 N -0.89 -7.19 9.10 32.41 0.29 -6.90 16 8 C -0.12 -1.56 9.88 -39.31 -0.39 -1.95 16 9 C -0.18 -2.95 8.22 -39.51 -0.32 -3.27 16 10 C 0.16 3.03 6.62 -38.61 -0.26 2.78 16 11 O -0.26 -6.03 7.62 -40.71 -0.31 -6.34 16 12 C 0.08 1.77 2.17 -26.73 -0.06 1.71 16 13 H 0.06 1.26 6.31 -51.93 -0.33 0.93 16 14 C -0.18 -3.15 9.17 37.15 0.34 -2.81 16 15 C 0.03 0.74 4.68 -27.88 -0.13 0.60 16 16 C -0.51 -15.05 8.88 -34.44 -0.31 -15.36 16 17 H 0.05 1.61 7.74 -52.48 -0.41 1.20 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 19 N -0.90 -27.89 13.29 55.43 0.74 -27.15 16 20 Si 0.89 22.92 29.54 -169.99 -5.02 17.90 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 24 H 0.08 0.68 5.60 -51.93 -0.29 0.39 16 25 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.13 1.26 5.92 -52.49 -0.31 0.95 16 28 H 0.39 2.50 8.84 -40.82 -0.36 2.14 16 29 H 0.39 2.42 8.84 -40.82 -0.36 2.06 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.14 2.07 5.41 -52.49 -0.28 1.79 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.74 6.90 -51.93 -0.36 0.38 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 311.94 15.07 4.70 4.70 Total: -1.00 -35.54 311.94 -7.27 -42.82 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -4.79 Total: 1.34 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -2.62 Total: -16.41 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 1.03 Total: -34.05 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.57 Total: -16.30 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -35.54 -7.27 -42.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695906615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.941 kcal (2) G-P(sol) polarization free energy of solvation -35.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds