Wall clock time and date at job start Mon Mar 30 2020 06:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21304 * 120.00231 * 2 1 4 4 C 1.46787 * 120.00028 * 180.02562 * 2 1 3 5 5 C 1.40020 * 120.18872 * 0.20511 * 4 2 1 6 6 C 1.38297 * 119.80462 * 180.27268 * 5 4 2 7 7 N 1.39961 * 119.90810 * 179.72449 * 6 5 4 8 8 C 1.39208 * 120.18209 * 359.75136 * 6 5 4 9 9 C 1.37999 * 120.38608 * 0.02562 * 8 6 5 10 10 C 1.38668 * 120.19578 * 359.97438 * 9 8 6 11 11 O 1.35685 * 120.09446 * 179.97438 * 10 9 8 12 12 C 1.42900 * 117.00119 * 354.51597 * 11 10 9 13 13 H 1.08999 * 109.47302 * 324.92799 * 12 11 10 14 14 C 1.52994 * 109.46969 * 84.92997 * 12 11 10 15 15 C 1.53005 * 109.47110 * 204.93023 * 12 11 10 16 16 C 1.50698 * 109.47038 * 65.00124 * 15 12 11 17 17 H 1.08005 * 120.00055 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00152 * 179.72388 * 16 15 12 19 19 N 1.31517 * 119.99535 * 0.27594 * 18 16 15 20 20 Si 1.86795 * 120.00354 * 180.27383 * 18 16 15 21 21 H 1.48505 * 109.46747 * 90.00027 * 20 18 16 22 22 H 1.48494 * 109.47388 * 209.99874 * 20 18 16 23 23 H 1.48497 * 109.47020 * 330.00190 * 20 18 16 24 24 H 1.08993 * 109.47626 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46987 * 300.00086 * 1 2 3 26 26 H 1.08996 * 109.47507 * 59.99347 * 1 2 3 27 27 H 1.07997 * 120.10109 * 0.02562 * 5 4 2 28 28 H 0.97002 * 119.99700 * 180.02562 * 7 6 5 29 29 H 0.97000 * 119.99939 * 0.02562 * 7 6 5 30 30 H 1.07995 * 119.80487 * 180.02562 * 8 6 5 31 31 H 1.07997 * 119.90189 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.47395 * 179.97438 * 14 12 11 33 33 H 1.09003 * 109.47327 * 300.00228 * 14 12 11 34 34 H 1.09005 * 109.47409 * 60.00165 * 14 12 11 35 35 H 1.08999 * 109.46955 * 305.00409 * 15 12 11 36 36 H 1.08996 * 109.46897 * 185.00036 * 15 12 11 37 37 H 0.97001 * 119.99814 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2409 -1.2712 -0.0006 5 6 1.5448 -2.4861 -0.0054 6 6 2.2442 -3.6791 -0.0002 7 7 1.5506 -4.8948 0.0007 8 6 3.6363 -3.6742 0.0046 9 6 4.3302 -2.4814 0.0048 10 6 3.6448 -1.2759 -0.0004 11 8 4.3291 -0.1042 0.0003 12 6 5.7502 -0.1829 0.1282 13 1 6.0104 -1.0121 0.7861 14 6 6.3744 -0.4101 -1.2500 15 6 6.2822 1.1239 0.7200 16 6 5.7638 1.2865 2.1256 17 1 5.1190 0.5333 2.5539 18 6 6.1168 2.3943 2.8667 19 7 6.9015 3.3117 2.3450 20 14 5.4805 2.5921 4.6118 21 1 6.4334 1.9618 5.5605 22 1 5.3481 4.0366 4.9297 23 1 4.1542 1.9351 4.7325 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.4648 -2.4916 -0.0092 28 1 2.0399 -5.7323 0.0048 29 1 0.5806 -4.8997 -0.0026 30 1 4.1764 -4.6094 0.0082 31 1 5.4101 -2.4867 0.0090 32 1 7.4584 -0.4697 -1.1526 33 1 5.9954 -1.3411 -1.6716 34 1 6.1142 0.4192 -1.9079 35 1 5.9464 1.9623 0.1096 36 1 7.3717 1.0988 0.7351 37 1 7.1496 4.0912 2.8662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695906615.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:37 Heat of formation + Delta-G solvation = -78.086589 kcal Electronic energy + Delta-G solvation = -19902.187718 eV Core-core repulsion = 16836.720907 eV Total energy + Delta-G solvation = -3065.466811 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.42165 -39.66715 -38.86381 -35.62453 -34.58286 -33.22844 -32.91168 -30.06830 -29.36901 -28.66276 -25.31286 -24.95525 -23.42676 -21.53810 -20.74580 -19.03393 -18.54880 -17.83461 -17.64828 -16.61934 -16.28075 -16.03938 -15.84799 -15.81199 -15.46290 -15.23338 -14.42240 -14.27692 -13.93213 -13.73499 -13.44422 -13.36918 -13.26811 -13.00732 -12.93038 -12.69378 -12.63897 -12.39775 -12.18464 -11.89144 -11.32837 -11.23169 -10.61051 -10.51219 -10.44887 -9.96758 -8.22195 -8.02463 -6.30125 -0.18931 0.68020 1.32224 1.36102 1.46911 1.64785 2.38424 2.54782 2.95571 3.07844 3.12307 3.33297 3.86822 3.97861 4.09034 4.21181 4.32231 4.39586 4.42887 4.58510 4.67142 4.68851 4.76403 4.98035 5.00512 5.06255 5.16034 5.19797 5.31549 5.34888 5.47656 5.53830 5.72819 5.75944 6.18549 6.66473 6.77951 6.81199 6.88952 7.18727 7.36080 8.90225 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.006165 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.598298 B = 4540.353745 C = 4996.927326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.371 3.629 3 O -0.495 6.495 4 C -0.196 4.196 5 C -0.111 4.111 6 C 0.163 3.837 7 N -0.867 5.867 8 C -0.117 4.117 9 C -0.191 4.191 10 C 0.104 3.896 11 O -0.301 6.301 12 C 0.088 3.912 13 H 0.067 0.933 14 C -0.164 4.164 15 C 0.031 3.969 16 C -0.525 4.525 17 H 0.045 0.955 18 C 0.001 3.999 19 N -0.932 5.932 20 Si 0.960 3.040 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.276 1.276 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.170 0.830 28 H 0.407 0.593 29 H 0.408 0.592 30 H 0.154 0.846 31 H 0.136 0.864 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.049 0.951 35 H -0.011 1.011 36 H 0.026 0.974 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.998 -19.499 -5.982 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.252 3.748 3 O -0.373 6.373 4 C -0.198 4.198 5 C -0.134 4.134 6 C 0.059 3.941 7 N -0.411 5.411 8 C -0.139 4.139 9 C -0.210 4.210 10 C 0.056 3.944 11 O -0.214 6.214 12 C 0.032 3.968 13 H 0.085 0.915 14 C -0.222 4.222 15 C -0.006 4.006 16 C -0.563 4.563 17 H 0.063 0.937 18 C -0.197 4.197 19 N -0.572 5.572 20 Si 0.785 3.215 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.201 1.201 24 H 0.133 0.867 25 H 0.113 0.887 26 H 0.120 0.880 27 H 0.187 0.813 28 H 0.237 0.763 29 H 0.238 0.762 30 H 0.172 0.828 31 H 0.154 0.846 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.007 0.993 36 H 0.044 0.956 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.633 -18.541 -5.966 23.215 hybrid contribution 0.212 0.363 0.824 0.925 sum -12.421 -18.178 -5.142 22.609 Atomic orbital electron populations 1.22211 0.90124 1.06629 1.05286 1.23140 0.93654 0.87244 0.70765 1.90689 1.73356 1.35766 1.37462 1.20026 0.90612 0.96458 1.12695 1.20930 1.00778 0.88260 1.03394 1.17566 0.91104 0.87575 0.97876 1.42228 1.09249 1.03636 1.85987 1.20902 0.92800 0.97976 1.02268 1.21255 1.00940 0.91503 1.07330 1.19774 0.92054 0.86210 0.96387 1.86384 1.20987 1.28069 1.85945 1.22609 0.77785 0.99634 0.96746 0.91543 1.22293 1.01866 1.02079 0.95925 1.19070 0.95237 0.91516 0.94748 1.21375 1.29063 1.06385 0.99435 0.93705 1.25878 0.95409 0.95403 1.02960 1.70073 1.37200 1.11123 1.38840 0.85522 0.78785 0.77554 0.79668 1.18685 1.20339 1.20065 0.86715 0.88709 0.88006 0.81260 0.76341 0.76188 0.82808 0.84599 0.89852 0.90738 0.93231 0.99259 0.95579 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.02 10.19 71.23 0.73 -3.30 16 2 C 0.37 13.42 7.21 27.92 0.20 13.62 16 3 O -0.49 -24.50 15.90 17.89 0.28 -24.22 16 4 C -0.20 -6.62 5.88 -20.09 -0.12 -6.73 16 5 C -0.11 -2.49 9.28 22.72 0.21 -2.28 16 6 C 0.16 3.23 6.75 38.09 0.26 3.49 16 7 N -0.87 -9.28 9.10 -51.38 -0.47 -9.75 16 8 C -0.12 -2.67 9.88 22.45 0.22 -2.45 16 9 C -0.19 -5.98 8.22 22.32 0.18 -5.80 16 10 C 0.10 4.13 6.62 22.90 0.15 4.28 16 11 O -0.30 -14.87 7.62 -69.04 -0.53 -15.39 16 12 C 0.09 4.08 2.17 30.59 0.07 4.14 16 13 H 0.07 2.90 6.31 -2.39 -0.02 2.89 16 14 C -0.16 -6.04 9.17 71.98 0.66 -5.38 16 15 C 0.03 1.80 4.68 29.85 0.14 1.94 16 16 C -0.52 -32.85 8.88 25.60 0.23 -32.62 16 17 H 0.04 2.81 7.74 -2.91 -0.02 2.79 16 18 C 0.00 0.05 5.46 84.65 0.46 0.51 16 19 N -0.93 -60.02 13.29 21.45 0.28 -59.74 16 20 Si 0.96 48.18 29.54 68.60 2.03 50.20 16 21 H -0.26 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 23 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 24 H 0.11 1.52 5.60 -2.39 -0.01 1.51 16 25 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.17 2.34 5.92 -2.91 -0.02 2.32 16 28 H 0.41 2.87 8.84 -92.71 -0.82 2.05 16 29 H 0.41 2.58 8.84 -92.71 -0.82 1.77 16 30 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.14 4.09 5.41 -2.91 -0.02 4.08 16 32 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.07 2.31 6.90 -2.39 -0.02 2.29 16 34 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 35 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 36 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -84.82 311.94 4.46 -80.35 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -0.53 Total: 9.11 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 3.39 Total: -30.57 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -0.18 Total: -69.48 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.24 Total: -39.61 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.20 kcal Total: -84.82 4.46 -80.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695906615.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.268 kcal (2) G-P(sol) polarization free energy of solvation -84.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds