Wall clock time and date at job start Mon Mar 30 2020 06:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46802 * 2 1 4 4 C 1.53007 * 109.47398 * 240.00332 * 2 1 3 5 5 O 1.45202 * 109.47328 * 119.99997 * 2 1 3 6 6 C 1.34650 * 116.99821 * 59.99985 * 5 2 1 7 7 O 1.21495 * 120.00227 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00097 * 179.97438 * 6 5 2 9 9 C 1.37206 * 120.00048 * 242.69488 * 8 6 5 10 10 H 1.08006 * 119.99407 * 205.57952 * 9 8 6 11 11 C 1.38832 * 120.00423 * 25.57134 * 9 8 6 12 12 N 1.31471 * 119.99666 * 11.96517 * 11 9 8 13 13 Si 1.86794 * 120.00117 * 191.95904 * 11 9 8 14 14 H 1.48498 * 109.47288 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47177 * 120.00512 * 13 11 9 16 16 H 1.48501 * 109.47084 * 240.00302 * 13 11 9 17 17 C 1.39768 * 119.99516 * 62.68507 * 8 6 5 18 18 C 1.38966 * 120.08002 * 9.71210 * 17 8 6 19 19 C 1.38081 * 119.92228 * 179.97438 * 18 17 8 20 20 C 1.38315 * 120.07845 * 359.97410 * 19 18 17 21 21 C 1.38312 * 120.15735 * 0.04343 * 20 19 18 22 22 C 1.38089 * 120.07520 * 359.95629 * 21 20 19 23 23 H 1.08993 * 109.47277 * 299.99925 * 1 2 3 24 24 H 1.09006 * 109.46967 * 60.00439 * 1 2 3 25 25 H 1.08998 * 109.46848 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46856 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47351 * 299.99346 * 3 2 1 28 28 H 1.08996 * 109.47325 * 60.00498 * 3 2 1 29 29 H 1.09001 * 109.46251 * 299.99790 * 4 2 1 30 30 H 1.08999 * 109.47130 * 59.99317 * 4 2 1 31 31 H 1.08994 * 109.47176 * 179.97438 * 4 2 1 32 32 H 0.97000 * 119.99962 * 179.97438 * 12 11 9 33 33 H 1.07995 * 120.04059 * 359.68934 * 18 17 8 34 34 H 1.07997 * 119.96352 * 179.97438 * 19 18 17 35 35 H 1.07999 * 119.92151 * 180.02562 * 20 19 18 36 36 H 1.07994 * 119.96397 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.03419 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9724 1.3383 7 8 0.9517 -2.5098 0.5037 8 7 2.0681 -2.6659 2.4166 9 6 2.8754 -3.7637 2.2568 10 1 2.8805 -4.5436 3.0040 11 6 3.6854 -3.8723 1.1345 12 7 3.8612 -2.8337 0.3478 13 14 4.5256 -5.4939 0.7424 14 1 4.1680 -6.4992 1.7753 15 1 4.0786 -5.9735 -0.5901 16 1 5.9976 -5.2984 0.7299 17 6 1.6771 -2.2665 3.6977 18 6 0.7045 -1.2864 3.8551 19 6 0.3203 -0.8946 5.1222 20 6 0.9018 -1.4768 6.2340 21 6 1.8703 -2.4523 6.0810 22 6 2.2594 -2.8490 4.8169 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1393 31 1 3.1300 -0.7208 -1.2495 32 1 4.4275 -2.9095 -0.4361 33 1 0.2531 -0.8284 2.9875 34 1 -0.4351 -0.1327 5.2454 35 1 0.5991 -1.1688 7.2239 36 1 2.3226 -2.9045 6.9512 37 1 3.0160 -3.6105 4.6982 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698454270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:14 Heat of formation + Delta-G solvation = -45.059780 kcal Electronic energy + Delta-G solvation = -20947.181086 eV Core-core repulsion = 17883.146425 eV Total energy + Delta-G solvation = -3064.034661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06837 -38.32106 -36.44233 -34.52215 -33.12280 -32.07689 -30.11888 -28.49862 -26.93178 -26.70067 -25.46504 -22.74980 -21.45770 -20.70690 -19.05419 -17.58450 -17.33658 -15.98740 -15.46898 -15.14205 -14.50277 -14.22903 -14.17318 -13.59819 -13.39586 -13.17524 -12.88280 -12.54104 -12.31348 -12.01809 -11.73120 -11.52216 -11.31475 -11.24676 -11.09011 -11.06405 -10.77937 -10.59367 -10.52935 -10.38887 -10.07943 -9.90420 -9.41732 -9.05933 -8.75413 -8.16155 -6.99448 -6.54932 -4.03058 2.22541 2.31049 3.10211 3.17192 3.22052 3.39460 3.82043 4.10503 4.62726 5.06836 5.14667 5.32480 5.35550 5.53498 5.64764 5.67162 5.87040 5.91427 6.03083 6.09757 6.18982 6.24702 6.29687 6.41548 6.45316 6.54555 6.66416 6.81063 6.82634 7.14523 7.20878 7.27363 7.32571 7.37061 7.47463 7.77568 7.92771 8.61273 9.00352 9.18021 9.58562 10.56593 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.011578 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.088502 B = 2417.778892 C = 4172.690152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.133 3.867 3 C -0.136 4.136 4 C -0.166 4.166 5 O -0.348 6.348 6 C 0.719 3.281 7 O -0.540 6.540 8 N -0.429 5.429 9 C -0.318 4.318 10 H 0.107 0.893 11 C 0.035 3.965 12 N -0.865 5.865 13 Si 0.937 3.063 14 H -0.266 1.266 15 H -0.279 1.279 16 H -0.280 1.280 17 C 0.209 3.791 18 C -0.206 4.206 19 C -0.076 4.076 20 C -0.208 4.208 21 C -0.080 4.080 22 C -0.181 4.181 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.276 0.724 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.951 5.191 2.061 6.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.095 3.905 3 C -0.193 4.193 4 C -0.223 4.223 5 O -0.262 6.262 6 C 0.479 3.521 7 O -0.427 6.427 8 N -0.141 5.141 9 C -0.443 4.443 10 H 0.124 0.876 11 C -0.171 4.171 12 N -0.501 5.501 13 Si 0.763 3.237 14 H -0.190 1.190 15 H -0.204 1.204 16 H -0.205 1.205 17 C 0.103 3.897 18 C -0.229 4.229 19 C -0.095 4.095 20 C -0.229 4.229 21 C -0.099 4.099 22 C -0.204 4.204 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.001 5.083 1.282 6.040 hybrid contribution 0.544 -0.633 -0.468 0.957 sum -2.457 4.450 0.814 5.148 Atomic orbital electron populations 1.22523 0.95448 1.04559 1.01489 1.21789 0.92966 0.91422 0.84290 1.21786 1.02248 0.93454 1.01839 1.22330 1.02394 1.02958 0.94657 1.86473 1.69894 1.25826 1.44018 1.17464 0.74939 0.78876 0.80850 1.90665 1.37653 1.70173 1.44174 1.40059 1.48401 1.25372 1.00224 1.19482 1.19022 0.96412 1.09430 0.87561 1.25394 0.96022 0.98955 0.96745 1.69538 1.37227 1.28281 1.15084 0.85704 0.78324 0.80854 0.78854 1.19042 1.20427 1.20546 1.18090 0.93541 0.92665 0.85377 1.20533 1.02403 1.02546 0.97438 1.20608 0.98459 0.98433 0.92015 1.20610 1.02541 1.02268 0.97461 1.20774 0.96513 0.96497 0.96094 1.20674 1.03657 1.05294 0.90762 0.92733 0.91937 0.89708 0.91656 0.91211 0.92154 0.89416 0.93494 0.91508 0.91333 0.87613 0.87375 0.87673 0.87196 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 8.37 37.16 0.31 -2.91 16 2 C 0.13 2.61 1.13 -90.61 -0.10 2.51 16 3 C -0.14 -2.13 8.85 37.16 0.33 -1.80 16 4 C -0.17 -3.33 8.19 37.16 0.30 -3.02 16 5 O -0.35 -8.38 9.32 -40.35 -0.38 -8.76 16 6 C 0.72 18.80 2.70 54.06 0.15 18.95 16 7 O -0.54 -14.80 12.62 -19.27 -0.24 -15.04 16 8 N -0.43 -11.34 2.85 -63.95 -0.18 -11.52 16 9 C -0.32 -8.51 8.73 -14.93 -0.13 -8.64 16 10 H 0.11 2.68 6.65 -52.48 -0.35 2.33 16 11 C 0.03 0.91 5.24 -17.49 -0.09 0.82 16 12 N -0.87 -23.45 11.33 55.49 0.63 -22.82 16 13 Si 0.94 20.50 29.57 -169.99 -5.03 15.47 16 14 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 17 C 0.21 4.94 6.43 -83.70 -0.54 4.40 16 18 C -0.21 -4.42 9.14 -39.37 -0.36 -4.78 16 19 C -0.08 -1.38 10.04 -39.61 -0.40 -1.78 16 20 C -0.21 -3.56 10.04 -39.53 -0.40 -3.96 16 21 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 22 C -0.18 -3.84 9.22 -39.37 -0.36 -4.21 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.08 1.73 5.88 -51.93 -0.31 1.42 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 2.06 5.88 -51.93 -0.31 1.76 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.41 8.13 -51.93 -0.42 0.99 16 32 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.11 2.29 6.80 -52.49 -0.36 1.93 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.13 2.64 6.49 -52.49 -0.34 2.30 16 LS Contribution 306.31 15.07 4.62 4.62 Total: -1.00 -29.81 306.31 -7.29 -37.10 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.02 Total: 7.20 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -1.69 Total: -6.26 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.45 Total: -34.34 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.62 Total: -23.80 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.81 -7.29 -37.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698454270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.955 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds