Wall clock time and date at job start Mon Mar 30 2020 06:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46802 * 2 1 4 4 C 1.53007 * 109.47398 * 240.00332 * 2 1 3 5 5 O 1.45202 * 109.47328 * 119.99997 * 2 1 3 6 6 C 1.34650 * 116.99821 * 59.99985 * 5 2 1 7 7 O 1.21495 * 120.00227 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00097 * 179.97438 * 6 5 2 9 9 C 1.37206 * 120.00048 * 242.69488 * 8 6 5 10 10 H 1.08006 * 119.99407 * 205.57952 * 9 8 6 11 11 C 1.38832 * 120.00423 * 25.57134 * 9 8 6 12 12 N 1.31471 * 119.99666 * 11.96517 * 11 9 8 13 13 Si 1.86794 * 120.00117 * 191.95904 * 11 9 8 14 14 H 1.48498 * 109.47288 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47177 * 120.00512 * 13 11 9 16 16 H 1.48501 * 109.47084 * 240.00302 * 13 11 9 17 17 C 1.39768 * 119.99516 * 62.68507 * 8 6 5 18 18 C 1.38966 * 120.08002 * 9.71210 * 17 8 6 19 19 C 1.38081 * 119.92228 * 179.97438 * 18 17 8 20 20 C 1.38315 * 120.07845 * 359.97410 * 19 18 17 21 21 C 1.38312 * 120.15735 * 0.04343 * 20 19 18 22 22 C 1.38089 * 120.07520 * 359.95629 * 21 20 19 23 23 H 1.08993 * 109.47277 * 299.99925 * 1 2 3 24 24 H 1.09006 * 109.46967 * 60.00439 * 1 2 3 25 25 H 1.08998 * 109.46848 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46856 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47351 * 299.99346 * 3 2 1 28 28 H 1.08996 * 109.47325 * 60.00498 * 3 2 1 29 29 H 1.09001 * 109.46251 * 299.99790 * 4 2 1 30 30 H 1.08999 * 109.47130 * 59.99317 * 4 2 1 31 31 H 1.08994 * 109.47176 * 179.97438 * 4 2 1 32 32 H 0.97000 * 119.99962 * 179.97438 * 12 11 9 33 33 H 1.07995 * 120.04059 * 359.68934 * 18 17 8 34 34 H 1.07997 * 119.96352 * 179.97438 * 19 18 17 35 35 H 1.07999 * 119.92151 * 180.02562 * 20 19 18 36 36 H 1.07994 * 119.96397 * 179.97438 * 21 20 19 37 37 H 1.08000 * 120.03419 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6523 -1.9724 1.3383 7 8 0.9517 -2.5098 0.5037 8 7 2.0681 -2.6659 2.4166 9 6 2.8754 -3.7637 2.2568 10 1 2.8805 -4.5436 3.0040 11 6 3.6854 -3.8723 1.1345 12 7 3.8612 -2.8337 0.3478 13 14 4.5256 -5.4939 0.7424 14 1 4.1680 -6.4992 1.7753 15 1 4.0786 -5.9735 -0.5901 16 1 5.9976 -5.2984 0.7299 17 6 1.6771 -2.2665 3.6977 18 6 0.7045 -1.2864 3.8551 19 6 0.3203 -0.8946 5.1222 20 6 0.9018 -1.4768 6.2340 21 6 1.8703 -2.4523 6.0810 22 6 2.2594 -2.8490 4.8169 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2074 -2.1393 31 1 3.1300 -0.7208 -1.2495 32 1 4.4275 -2.9095 -0.4361 33 1 0.2531 -0.8284 2.9875 34 1 -0.4351 -0.1327 5.2454 35 1 0.5991 -1.1688 7.2239 36 1 2.3226 -2.9045 6.9512 37 1 3.0160 -3.6105 4.6982 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698454270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:14 Heat of formation + Delta-G solvation = -61.699700 kcal Electronic energy + Delta-G solvation = -20947.902647 eV Core-core repulsion = 17883.146425 eV Total energy + Delta-G solvation = -3064.756222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.85571 -39.94362 -38.12413 -36.37425 -34.77961 -33.91606 -31.67118 -30.15625 -28.29354 -28.21026 -27.35334 -24.46197 -23.04373 -22.34589 -20.75195 -19.43462 -19.03018 -17.76974 -17.19496 -16.78531 -16.20318 -15.91183 -15.82458 -15.15025 -15.00594 -14.71272 -14.51118 -14.09354 -13.95380 -13.56394 -13.25717 -12.97857 -12.96211 -12.85938 -12.77060 -12.71139 -12.33305 -12.23239 -12.17337 -12.00220 -11.70262 -11.62199 -11.12592 -10.89887 -10.61000 -9.69662 -8.73448 -8.47404 -6.02115 0.67313 0.74751 1.31787 1.39495 1.50499 1.62410 2.05033 2.29966 2.92222 3.26808 3.49547 3.88204 3.91029 4.06969 4.15065 4.25932 4.47556 4.59669 4.64577 4.73958 4.77216 4.78962 4.86784 4.89420 4.94432 5.07508 5.12740 5.27794 5.31044 5.36802 5.53696 5.63838 5.71360 5.79790 5.85194 5.93579 6.32826 6.70227 7.13685 7.31720 7.70812 8.63554 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.011578 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.088502 B = 2417.778892 C = 4172.690152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.114 3.886 3 C -0.127 4.127 4 C -0.156 4.156 5 O -0.363 6.363 6 C 0.723 3.277 7 O -0.571 6.571 8 N -0.459 5.459 9 C -0.338 4.338 10 H 0.108 0.892 11 C -0.017 4.017 12 N -0.895 5.895 13 Si 1.001 2.999 14 H -0.254 1.254 15 H -0.285 1.285 16 H -0.271 1.271 17 C 0.171 3.829 18 C -0.222 4.222 19 C -0.073 4.073 20 C -0.187 4.187 21 C -0.075 4.075 22 C -0.197 4.197 23 H 0.064 0.936 24 H 0.098 0.902 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.273 0.727 33 H 0.093 0.907 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.616 6.524 4.044 8.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.077 3.923 3 C -0.184 4.184 4 C -0.213 4.213 5 O -0.278 6.278 6 C 0.484 3.516 7 O -0.460 6.460 8 N -0.175 5.175 9 C -0.463 4.463 10 H 0.126 0.874 11 C -0.218 4.218 12 N -0.532 5.532 13 Si 0.824 3.176 14 H -0.177 1.177 15 H -0.212 1.212 16 H -0.196 1.196 17 C 0.069 3.931 18 C -0.244 4.244 19 C -0.092 4.092 20 C -0.207 4.207 21 C -0.093 4.093 22 C -0.220 4.220 23 H 0.083 0.917 24 H 0.117 0.883 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.126 0.874 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.163 0.837 35 H 0.169 0.831 36 H 0.166 0.834 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.679 6.445 3.332 8.135 hybrid contribution 0.636 -0.925 -0.886 1.430 sum -3.044 5.520 2.446 6.761 Atomic orbital electron populations 1.22429 0.93963 1.02993 1.03711 1.22358 0.94431 0.92927 0.82573 1.21800 1.01613 0.90829 1.04180 1.22197 1.00968 1.01241 0.96874 1.86449 1.70122 1.25152 1.46049 1.17484 0.74387 0.79260 0.80498 1.90624 1.39123 1.70993 1.45282 1.40197 1.49601 1.26387 1.01295 1.19753 1.19262 0.97301 1.10009 0.87399 1.26319 0.96793 1.02144 0.96590 1.69659 1.38229 1.29881 1.15423 0.84745 0.77506 0.77130 0.78229 1.17733 1.21159 1.19603 1.18574 0.94865 0.94495 0.85136 1.20684 1.02400 1.02570 0.98796 1.21063 0.98672 0.98665 0.90755 1.21188 1.00313 1.00101 0.99135 1.21225 0.96181 0.96148 0.95743 1.20856 1.03961 1.05428 0.91745 0.91743 0.88330 0.93120 0.92680 0.87390 0.91200 0.93450 0.89696 0.93479 0.91697 0.88887 0.83727 0.83132 0.83393 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.07 8.37 71.98 0.60 -5.47 16 2 C 0.11 4.50 1.13 -10.79 -0.01 4.48 16 3 C -0.13 -3.77 8.85 71.98 0.64 -3.14 16 4 C -0.16 -6.39 8.19 71.98 0.59 -5.80 16 5 O -0.36 -18.24 9.32 -55.59 -0.52 -18.76 16 6 C 0.72 39.83 2.70 129.79 0.35 40.18 16 7 O -0.57 -33.34 12.62 19.86 0.25 -33.09 16 8 N -0.46 -25.50 2.85 -586.64 -1.67 -27.17 16 9 C -0.34 -18.95 8.73 83.99 0.73 -18.22 16 10 H 0.11 5.71 6.65 -2.91 -0.02 5.69 16 11 C -0.02 -0.92 5.24 84.89 0.44 -0.47 16 12 N -0.89 -51.04 11.33 21.64 0.25 -50.80 16 13 Si 1.00 43.57 29.57 68.60 2.03 45.60 16 14 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 15 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 17 C 0.17 8.31 6.43 38.22 0.25 8.55 16 18 C -0.22 -9.49 9.14 22.41 0.20 -9.28 16 19 C -0.07 -2.42 10.04 22.25 0.22 -2.20 16 20 C -0.19 -5.54 10.04 22.31 0.22 -5.32 16 21 C -0.07 -2.43 10.04 22.25 0.22 -2.21 16 22 C -0.20 -8.34 9.22 22.41 0.21 -8.14 16 23 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 25 H 0.05 2.13 5.88 -2.39 -0.01 2.12 16 26 H 0.05 1.73 8.14 -2.38 -0.02 1.72 16 27 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 2.34 5.88 -2.39 -0.01 2.33 16 30 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.05 2.07 8.13 -2.39 -0.02 2.05 16 32 H 0.27 14.82 8.31 -92.71 -0.77 14.04 16 33 H 0.09 4.14 6.80 -2.91 -0.02 4.12 16 34 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 35 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 37 H 0.12 5.02 6.49 -2.91 -0.02 5.01 16 Total: -1.00 -70.17 306.31 6.07 -64.10 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 1.06 Total: 27.14 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: 4.67 Total: -7.03 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -1.43 Total: -77.97 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: -0.27 Total: -51.85 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -70.17 6.07 -64.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698454270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.402 kcal (2) G-P(sol) polarization free energy of solvation -70.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds