Wall clock time and date at job start Mon Mar 30 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47420 * 2 1 4 4 O 1.42896 * 109.47632 * 179.97438 * 3 2 1 5 5 C 1.35703 * 117.00248 * 179.97438 * 4 3 2 6 6 C 1.39001 * 119.91238 * 0.30191 * 5 4 3 7 7 C 1.37701 * 120.09036 * 180.25651 * 6 5 4 8 8 C 1.39740 * 119.91009 * 359.43945 * 7 6 5 9 9 C 1.47594 * 120.08984 * 180.30153 * 8 7 6 10 10 O 1.21587 * 119.99976 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00311 * 180.02562 * 9 8 7 12 12 C 1.46507 * 120.00361 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47202 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99802 * 0.02562 * 13 12 11 15 15 C 1.37868 * 119.99960 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00045 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00183 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47088 * 59.99580 * 17 15 13 19 19 H 1.48499 * 109.47358 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46472 * 299.99692 * 17 15 13 21 21 C 1.39733 * 119.82362 * 0.28485 * 8 7 6 22 22 C 1.37709 * 119.90833 * 359.97438 * 21 8 7 23 23 H 1.08999 * 109.46606 * 60.00518 * 1 2 3 24 24 H 1.09003 * 109.46765 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47209 * 300.00331 * 1 2 3 26 26 H 1.08992 * 109.47364 * 239.99395 * 2 1 3 27 27 H 1.09005 * 109.47271 * 119.99615 * 2 1 3 28 28 H 1.09007 * 109.46974 * 59.98989 * 3 2 1 29 29 H 1.09005 * 109.46584 * 300.00035 * 3 2 1 30 30 H 1.08004 * 119.95747 * 359.97438 * 6 5 4 31 31 H 1.08002 * 120.04909 * 179.72495 * 7 6 5 32 32 H 0.97004 * 119.99698 * 359.97438 * 11 9 8 33 33 H 1.08999 * 109.46594 * 299.99752 * 12 11 9 34 34 H 1.08991 * 109.46752 * 59.99612 * 12 11 9 35 35 H 0.97000 * 119.99888 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.04691 * 180.02562 * 21 8 7 37 37 H 1.07999 * 119.95155 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0851 2.6516 0.0001 6 6 3.3263 3.8162 0.0055 7 6 3.9476 5.0451 -0.0003 8 6 5.3430 5.1204 0.0003 9 6 6.0130 6.4355 0.0008 10 8 5.3508 7.4552 0.0012 11 7 7.3589 6.5061 0.0009 12 6 8.0241 7.8115 0.0020 13 6 9.5181 7.6140 0.0025 14 1 9.9308 6.6160 0.0016 15 6 10.3579 8.7074 0.0040 16 7 9.8552 9.9227 0.0046 17 14 12.2099 8.4627 0.0039 18 1 12.6090 7.7054 -1.2095 19 1 12.8840 9.7858 0.0064 20 1 12.6086 7.7022 1.2155 21 6 6.1022 3.9474 0.0007 22 6 5.4732 2.7223 0.0011 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 2.2479 3.7573 0.0096 31 1 3.3573 5.9496 -0.0006 32 1 7.8872 5.6925 0.0010 33 1 7.7312 8.3691 -0.8876 34 1 7.7311 8.3676 0.8924 35 1 10.4461 10.6919 0.0053 36 1 7.1809 4.0014 0.0016 37 1 6.0594 1.8152 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701333338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:15 Heat of formation + Delta-G solvation = -67.498240 kcal Electronic energy + Delta-G solvation = -18506.681063 eV Core-core repulsion = 15441.673397 eV Total energy + Delta-G solvation = -3065.007666 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36403 -38.95241 -37.03365 -34.26524 -34.23711 -32.41241 -31.04035 -30.18950 -27.27900 -26.80843 -23.62123 -23.10016 -21.99572 -21.46539 -19.76536 -18.47023 -17.61754 -16.59213 -16.19897 -15.82056 -15.06779 -14.82174 -14.56069 -14.40800 -14.24300 -13.93487 -13.50584 -13.29455 -12.73428 -12.63605 -12.54367 -12.20912 -11.94275 -11.89505 -11.52124 -11.46629 -10.99694 -10.90838 -10.82547 -10.81452 -10.31397 -9.40832 -9.15810 -9.08828 -8.72978 -8.28857 -7.83396 -6.15655 -4.22785 1.06208 1.33896 2.91372 3.26340 3.28047 3.31028 3.32552 4.08128 4.17539 4.38080 4.45705 4.47554 4.73947 4.79594 4.80309 5.00965 5.01407 5.19962 5.20354 5.27594 5.35889 5.43896 5.52965 5.57973 5.63941 5.77609 5.97846 6.19464 6.28910 6.48251 6.62372 7.23875 7.32429 7.42487 7.52584 7.67113 7.97518 8.61834 8.78002 9.08388 9.43609 10.94514 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.050524 B = 0.003056 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.053602 B = 9159.608168 C = 9682.609668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.056 3.944 4 O -0.315 6.315 5 C 0.143 3.857 6 C -0.219 4.219 7 C -0.024 4.024 8 C -0.160 4.160 9 C 0.542 3.458 10 O -0.556 6.556 11 N -0.706 5.706 12 C 0.249 3.751 13 C -0.544 4.544 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C -0.048 4.048 22 C -0.160 4.160 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.390 0.610 33 H 0.029 0.971 34 H 0.029 0.971 35 H 0.267 0.733 36 H 0.136 0.864 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.871 -19.501 -0.009 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.019 4.019 4 O -0.229 6.229 5 C 0.098 3.902 6 C -0.238 4.238 7 C -0.043 4.043 8 C -0.163 4.163 9 C 0.328 3.672 10 O -0.437 6.437 11 N -0.354 5.354 12 C 0.129 3.871 13 C -0.583 4.583 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.732 3.268 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.067 4.067 22 C -0.178 4.178 23 H 0.077 0.923 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.148 0.852 31 H 0.156 0.844 32 H 0.223 0.777 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.154 0.846 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.167 -18.726 -0.008 24.098 hybrid contribution 1.107 -0.248 0.000 1.134 sum -14.060 -18.973 -0.009 23.615 Atomic orbital electron populations 1.21695 0.94231 1.02531 1.02312 1.21485 0.96051 0.94838 1.03739 1.22913 0.78443 0.98836 1.01703 1.85993 1.21363 1.27224 1.88278 1.19191 0.92325 0.83950 0.94769 1.21177 1.00040 0.92059 1.10525 1.21077 0.93487 0.97495 0.92238 1.20199 0.94333 0.93896 1.07869 1.18146 0.83116 0.88070 0.77871 1.90726 1.64994 1.36263 1.51686 1.46418 1.05167 1.12038 1.71787 1.19142 0.91284 0.78809 0.97900 1.21178 0.90419 0.93246 1.53409 0.91927 1.24951 0.99488 0.94893 0.94680 1.69966 1.35668 0.97863 1.48758 0.86463 0.84231 0.77445 0.78702 1.20043 1.21073 1.20049 1.21222 1.00119 0.90833 0.94511 1.20322 0.91176 0.98600 1.07750 0.92302 0.91728 0.92306 0.90804 0.90805 0.91841 0.91835 0.85203 0.84419 0.77652 0.95340 0.95345 0.92377 0.84591 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.78 6.30 -26.73 -0.17 -0.95 16 3 C 0.06 0.45 4.73 37.16 0.18 0.63 16 4 O -0.32 -3.52 10.12 -18.81 -0.19 -3.71 16 5 C 0.14 1.78 6.70 -39.02 -0.26 1.52 16 6 C -0.22 -2.70 9.01 -39.49 -0.36 -3.06 16 7 C -0.02 -0.36 9.58 -39.22 -0.38 -0.73 16 8 C -0.16 -2.67 5.87 -104.96 -0.62 -3.28 16 9 C 0.54 11.55 7.76 -12.44 -0.10 11.45 16 10 O -0.56 -13.91 16.34 5.29 0.09 -13.83 16 11 N -0.71 -15.42 5.50 -62.51 -0.34 -15.76 16 12 C 0.25 6.71 5.43 -5.19 -0.03 6.68 16 13 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 14 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 17 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 C -0.05 -0.67 9.53 -39.22 -0.37 -1.04 16 22 C -0.16 -1.99 9.97 -39.50 -0.39 -2.39 16 23 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.47 7.64 -51.93 -0.40 0.07 16 29 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 30 H 0.13 1.25 6.28 -52.48 -0.33 0.92 16 31 H 0.14 2.06 7.64 -52.49 -0.40 1.65 16 32 H 0.39 7.24 6.34 -40.82 -0.26 6.99 16 33 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.14 1.66 6.39 -52.48 -0.34 1.33 16 37 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 318.57 15.07 4.80 4.80 Total: -1.00 -32.66 318.57 -7.51 -40.17 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -5.04 Total: 2.91 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -2.54 Total: -5.01 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.39 Total: -41.22 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.10 Total: -17.54 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.66 -7.51 -40.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701333338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.327 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds