Wall clock time and date at job start Mon Mar 30 2020 06:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47420 * 2 1 4 4 O 1.42896 * 109.47632 * 179.97438 * 3 2 1 5 5 C 1.35703 * 117.00248 * 179.97438 * 4 3 2 6 6 C 1.39001 * 119.91238 * 0.30191 * 5 4 3 7 7 C 1.37701 * 120.09036 * 180.25651 * 6 5 4 8 8 C 1.39740 * 119.91009 * 359.43945 * 7 6 5 9 9 C 1.47594 * 120.08984 * 180.30153 * 8 7 6 10 10 O 1.21587 * 119.99976 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00311 * 180.02562 * 9 8 7 12 12 C 1.46507 * 120.00361 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47202 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99802 * 0.02562 * 13 12 11 15 15 C 1.37868 * 119.99960 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00045 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00183 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47088 * 59.99580 * 17 15 13 19 19 H 1.48499 * 109.47358 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46472 * 299.99692 * 17 15 13 21 21 C 1.39733 * 119.82362 * 0.28485 * 8 7 6 22 22 C 1.37709 * 119.90833 * 359.97438 * 21 8 7 23 23 H 1.08999 * 109.46606 * 60.00518 * 1 2 3 24 24 H 1.09003 * 109.46765 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47209 * 300.00331 * 1 2 3 26 26 H 1.08992 * 109.47364 * 239.99395 * 2 1 3 27 27 H 1.09005 * 109.47271 * 119.99615 * 2 1 3 28 28 H 1.09007 * 109.46974 * 59.98989 * 3 2 1 29 29 H 1.09005 * 109.46584 * 300.00035 * 3 2 1 30 30 H 1.08004 * 119.95747 * 359.97438 * 6 5 4 31 31 H 1.08002 * 120.04909 * 179.72495 * 7 6 5 32 32 H 0.97004 * 119.99698 * 359.97438 * 11 9 8 33 33 H 1.08999 * 109.46594 * 299.99752 * 12 11 9 34 34 H 1.08991 * 109.46752 * 59.99612 * 12 11 9 35 35 H 0.97000 * 119.99888 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.04691 * 180.02562 * 21 8 7 37 37 H 1.07999 * 119.95155 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0851 2.6516 0.0001 6 6 3.3263 3.8162 0.0055 7 6 3.9476 5.0451 -0.0003 8 6 5.3430 5.1204 0.0003 9 6 6.0130 6.4355 0.0008 10 8 5.3508 7.4552 0.0012 11 7 7.3589 6.5061 0.0009 12 6 8.0241 7.8115 0.0020 13 6 9.5181 7.6140 0.0025 14 1 9.9308 6.6160 0.0016 15 6 10.3579 8.7074 0.0040 16 7 9.8552 9.9227 0.0046 17 14 12.2099 8.4627 0.0039 18 1 12.6090 7.7054 -1.2095 19 1 12.8840 9.7858 0.0064 20 1 12.6086 7.7022 1.2155 21 6 6.1022 3.9474 0.0007 22 6 5.4732 2.7223 0.0011 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 2.2479 3.7573 0.0096 31 1 3.3573 5.9496 -0.0006 32 1 7.8872 5.6925 0.0010 33 1 7.7312 8.3691 -0.8876 34 1 7.7311 8.3676 0.8924 35 1 10.4461 10.6919 0.0053 36 1 7.1809 4.0014 0.0016 37 1 6.0594 1.8152 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701333338.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:15 Heat of formation + Delta-G solvation = -89.040979 kcal Electronic energy + Delta-G solvation = -18507.615226 eV Core-core repulsion = 15441.673397 eV Total energy + Delta-G solvation = -3065.941829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.45041 -40.40760 -38.20081 -36.22492 -34.83361 -34.41475 -32.13095 -31.43990 -29.11525 -27.57118 -25.31674 -23.99141 -23.59075 -22.17335 -21.37639 -19.63522 -19.04332 -17.85251 -17.34201 -17.27106 -16.64799 -16.26246 -16.16343 -15.74170 -15.08004 -14.95773 -14.75120 -14.52293 -14.08365 -14.05054 -13.64216 -13.42134 -13.33242 -12.94388 -12.91297 -12.67997 -12.24709 -12.23926 -12.15417 -11.72189 -11.51905 -11.51818 -10.94331 -10.80048 -10.13269 -9.94066 -9.26609 -8.29021 -6.46183 -0.12414 0.29645 1.43706 1.48245 1.56318 1.88245 2.10774 2.30896 2.54454 2.83949 3.05814 3.70537 3.80034 3.86183 3.96935 4.02444 4.17791 4.29733 4.32796 4.48246 4.56785 4.62058 4.81435 4.96259 5.03313 5.13071 5.15780 5.20338 5.21784 5.22903 5.35617 5.37341 5.44840 5.58491 5.68744 5.82900 6.33837 6.63118 6.84825 7.21665 7.40775 8.83084 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.050524 B = 0.003056 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.053602 B = 9159.608168 C = 9682.609668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.045 3.955 4 O -0.319 6.319 5 C 0.154 3.846 6 C -0.212 4.212 7 C -0.031 4.031 8 C -0.188 4.188 9 C 0.540 3.460 10 O -0.604 6.604 11 N -0.701 5.701 12 C 0.266 3.734 13 C -0.558 4.558 14 H 0.085 0.915 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.987 3.013 18 H -0.261 1.261 19 H -0.285 1.285 20 H -0.261 1.261 21 C -0.041 4.041 22 C -0.158 4.158 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.128 0.872 32 H 0.407 0.593 33 H -0.010 1.010 34 H -0.010 1.010 35 H 0.269 0.731 36 H 0.151 0.849 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.552 -22.756 -0.008 27.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.029 4.029 4 O -0.232 6.232 5 C 0.107 3.893 6 C -0.231 4.231 7 C -0.050 4.050 8 C -0.191 4.191 9 C 0.330 3.670 10 O -0.488 6.488 11 N -0.351 5.351 12 C 0.143 3.857 13 C -0.595 4.595 14 H 0.103 0.897 15 C -0.197 4.197 16 N -0.569 5.569 17 Si 0.810 3.190 18 H -0.186 1.186 19 H -0.211 1.211 20 H -0.186 1.186 21 C -0.060 4.060 22 C -0.177 4.177 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.176 0.824 31 H 0.146 0.854 32 H 0.244 0.756 33 H 0.008 0.992 34 H 0.008 0.992 35 H 0.078 0.922 36 H 0.168 0.832 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.865 -22.048 -0.008 26.591 hybrid contribution 0.829 0.645 -0.001 1.050 sum -14.036 -21.404 -0.008 25.595 Atomic orbital electron populations 1.21695 0.93012 1.03206 1.02664 1.21496 0.96987 0.93666 1.03660 1.23245 0.76696 1.00305 1.02667 1.86016 1.23242 1.26336 1.87598 1.19357 0.92594 0.84450 0.92896 1.21361 1.01496 0.90830 1.09374 1.21096 0.92808 0.98450 0.92640 1.19841 0.95077 0.92020 1.12205 1.18898 0.82570 0.89557 0.76005 1.90685 1.65830 1.38567 1.53732 1.46124 1.05759 1.10886 1.72293 1.18603 0.92259 0.80542 0.94296 1.21570 0.90294 0.94475 1.53205 0.89679 1.26094 1.05467 0.94325 0.93768 1.70137 1.37908 0.99072 1.49770 0.85176 0.76783 0.77510 0.79557 1.18570 1.21084 1.18579 1.21322 1.00728 0.90291 0.93627 1.20581 0.91597 0.98780 1.06693 0.91962 0.90950 0.91966 0.90911 0.90912 0.90853 0.90852 0.82374 0.85366 0.75568 0.99242 0.99249 0.92199 0.83180 0.82184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 71.98 0.71 -0.31 16 2 C -0.12 -1.20 6.30 30.59 0.19 -1.00 16 3 C 0.05 0.58 4.73 71.98 0.34 0.92 16 4 O -0.32 -6.07 10.12 -90.23 -0.91 -6.98 16 5 C 0.15 3.37 6.70 22.63 0.15 3.52 16 6 C -0.21 -4.76 9.01 22.33 0.20 -4.55 16 7 C -0.03 -0.91 9.58 22.51 0.22 -0.69 16 8 C -0.19 -6.30 5.87 -20.08 -0.12 -6.41 16 9 C 0.54 24.01 7.76 86.71 0.67 24.68 16 10 O -0.60 -32.17 16.34 -3.99 -0.07 -32.23 16 11 N -0.70 -31.61 5.50 -469.95 -2.58 -34.19 16 12 C 0.27 15.06 5.43 85.63 0.46 15.53 16 13 C -0.56 -30.81 9.28 25.60 0.24 -30.57 16 14 H 0.09 4.21 7.60 -2.91 -0.02 4.19 16 15 C 0.00 0.18 5.46 84.65 0.46 0.64 16 16 N -0.93 -56.73 13.29 21.44 0.28 -56.45 16 17 Si 0.99 42.55 29.54 68.60 2.03 44.57 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 19 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 21 C -0.04 -1.07 9.53 22.51 0.21 -0.85 16 22 C -0.16 -3.47 9.97 22.33 0.22 -3.25 16 23 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 24 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.07 0.83 7.64 -2.38 -0.02 0.81 16 29 H 0.07 0.83 7.66 -2.38 -0.02 0.81 16 30 H 0.16 2.56 6.28 -2.91 -0.02 2.55 16 31 H 0.13 3.96 7.64 -2.91 -0.02 3.94 16 32 H 0.41 15.09 6.34 -92.71 -0.59 14.50 16 33 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.15 3.37 6.39 -2.91 -0.02 3.35 16 37 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -73.61 318.57 3.21 -70.40 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.49 Total: 17.24 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 3.97 Total: -2.36 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -2.30 Total: -90.64 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.98 Total: -39.21 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -73.61 3.21 -70.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701333338.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.640 kcal (2) G-P(sol) polarization free energy of solvation -73.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds