Wall clock time and date at job start Mon Mar 30 2020 07:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00204 * 2 1 4 4 O 1.20828 * 120.00140 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00145 * 180.02562 * 3 2 1 6 6 C 1.47203 * 109.46757 * 299.99476 * 5 3 2 7 7 N 3.71836 * 145.02257 * 87.50902 * 2 1 3 8 8 C 1.52996 * 109.47270 * 179.97438 * 5 3 2 9 9 C 1.53000 * 109.47442 * 54.42077 * 8 5 3 10 10 C 1.50703 * 115.54775 * 53.26467 * 9 8 5 11 11 H 1.08004 * 120.00077 * 5.62324 * 10 9 8 12 12 C 1.37879 * 119.99834 * 185.63062 * 10 9 8 13 13 N 1.31508 * 119.99885 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99846 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46903 * 89.99947 * 14 12 10 16 16 H 1.48499 * 109.47079 * 209.99678 * 14 12 10 17 17 H 1.48503 * 109.47453 * 330.00129 * 14 12 10 18 18 C 1.52997 * 117.49965 * 267.59150 * 9 8 5 19 19 C 1.52999 * 117.50021 * 198.92680 * 9 8 5 20 20 C 1.52995 * 109.47305 * 59.99061 * 5 3 2 21 21 C 1.52995 * 117.50219 * 293.93632 * 20 5 3 22 22 C 1.53001 * 60.03561 * 252.49577 * 21 20 5 23 23 H 1.09005 * 109.47054 * 60.00197 * 1 2 3 24 24 H 1.08999 * 109.47513 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46965 * 300.01138 * 1 2 3 26 26 H 1.08998 * 109.47349 * 174.42798 * 8 5 3 27 27 H 1.09008 * 109.47008 * 294.42252 * 8 5 3 28 28 H 0.97004 * 119.99620 * 179.97438 * 13 12 10 29 29 H 1.09000 * 117.49721 * 359.97438 * 18 9 8 30 30 H 1.09002 * 117.49948 * 145.02330 * 18 9 8 31 31 H 1.08993 * 117.50239 * 214.98210 * 19 9 8 32 32 H 1.09007 * 117.49616 * 359.97438 * 19 9 8 33 33 H 1.08999 * 115.55994 * 79.62746 * 20 5 3 34 34 H 1.09002 * 117.49840 * 0.02562 * 21 20 5 35 35 H 1.09005 * 117.50163 * 144.99708 * 21 20 5 36 36 H 1.09006 * 117.49639 * 107.49508 * 22 21 20 37 37 H 1.08995 * 117.50285 * 252.52487 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0931 0.6073 1.2011 7 7 4.4988 0.0926 2.1295 8 6 4.0002 2.7420 -0.0011 9 6 3.3405 3.4694 1.1721 10 6 3.5417 2.8368 2.5251 11 1 4.1942 1.9825 2.6301 12 6 2.8927 3.3484 3.6287 13 7 2.0986 4.3888 3.5008 14 14 3.1416 2.5639 5.3056 15 1 4.2897 3.2115 5.9896 16 1 1.9143 2.7419 6.1224 17 1 3.4188 1.1146 5.1379 18 6 2.0039 4.1662 0.9098 19 6 3.2743 4.9966 1.1093 20 6 4.1129 0.5813 -1.2500 21 6 3.9082 -0.9305 -1.3656 22 6 5.3000 -0.3683 -1.0697 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 5.0841 2.8004 0.0983 27 1 3.6954 3.2106 -0.9369 28 1 1.6418 4.7486 4.2773 29 1 1.5948 4.1067 -0.0988 30 1 1.2702 4.1674 1.7159 31 1 3.3758 5.5438 2.0465 32 1 3.7012 5.4832 0.2322 33 1 4.0718 1.1665 -2.1687 34 1 3.3836 -1.4310 -0.5517 35 1 3.7318 -1.3399 -2.3603 36 1 5.6915 -0.4989 -0.0608 37 1 6.0392 -0.4073 -1.8697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708773606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:09 Heat of formation + Delta-G solvation = 32.321531 kcal Electronic energy + Delta-G solvation = -21209.679756 eV Core-core repulsion = 18149.000600 eV Total energy + Delta-G solvation = -3060.679156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54361 -38.16348 -36.75777 -35.53684 -35.13109 -32.15845 -31.00947 -27.59514 -25.78984 -24.56542 -22.38262 -21.93107 -21.21670 -20.38508 -18.93654 -17.98321 -16.57839 -16.19666 -16.16001 -15.36316 -15.02289 -14.44324 -13.87606 -13.70118 -13.06740 -12.75881 -12.70056 -12.46949 -12.27005 -11.79079 -11.69380 -11.43378 -11.35884 -11.20163 -10.99449 -10.81183 -10.63120 -10.55896 -10.31541 -10.19793 -9.83311 -9.74476 -9.47348 -9.19489 -8.61870 -7.98324 -7.74563 -5.87399 -3.95613 2.62539 2.94675 3.31258 3.36839 3.45200 3.47999 3.66985 3.88622 4.33171 4.45780 4.65676 4.93189 4.95545 5.18235 5.35338 5.42251 5.47892 5.52104 5.61422 5.73745 5.83876 5.92043 6.08196 6.14268 6.24809 6.28072 6.42642 6.60808 6.90237 6.96260 7.30231 7.37811 7.58216 7.80354 8.12310 8.20324 8.41109 8.42852 8.63676 9.02145 9.61641 11.05022 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.009077 C = 0.008595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.541033 B = 3083.948797 C = 3257.047430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.363 6.363 3 C 0.469 3.531 4 O -0.443 6.443 5 C 0.101 3.899 6 C 0.252 3.748 7 N -0.425 5.425 8 C -0.056 4.056 9 C 0.000 4.000 10 C -0.500 4.500 11 H 0.075 0.925 12 C 0.067 3.933 13 N -0.871 5.871 14 Si 0.878 3.122 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.269 1.269 18 C -0.139 4.139 19 C -0.200 4.200 20 C -0.152 4.152 21 C -0.166 4.166 22 C -0.174 4.174 23 H 0.059 0.941 24 H 0.093 0.907 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.256 0.744 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 -7.980 -11.772 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.281 6.281 3 C 0.308 3.692 4 O -0.325 6.325 5 C 0.097 3.903 6 C -0.065 4.065 7 N -0.101 5.101 8 C -0.094 4.094 9 C 0.000 4.000 10 C -0.537 4.537 11 H 0.093 0.907 12 C -0.135 4.135 13 N -0.509 5.509 14 Si 0.706 3.294 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.193 1.193 18 C -0.177 4.177 19 C -0.238 4.238 20 C -0.171 4.171 21 C -0.203 4.203 22 C -0.211 4.211 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.145 0.855 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.115 0.885 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.233 -8.337 -10.235 13.203 hybrid contribution -0.277 0.123 0.807 0.862 sum -0.044 -8.214 -9.429 12.505 Atomic orbital electron populations 1.23154 0.77109 1.02813 1.02516 1.86474 1.22717 1.34083 1.84818 1.22959 0.90514 0.81691 0.74024 1.90901 1.66233 1.34034 1.41297 1.17509 0.87876 0.98018 0.86924 1.27408 0.94182 0.91793 0.93096 1.81092 1.08466 1.11590 1.08910 1.21133 1.00427 0.87728 1.00101 1.18955 0.98797 0.90439 0.91855 1.21206 1.26695 1.15024 0.90811 0.90749 1.24918 0.94981 0.94844 0.98759 1.70036 1.29024 1.22906 1.28939 0.86768 0.77565 0.80516 0.84568 1.20616 1.21268 1.19329 1.22917 0.92640 1.02731 0.99370 1.22863 1.05351 0.96032 0.99586 1.22285 1.04412 0.93025 0.97420 1.23054 0.99083 0.94601 1.03571 1.23147 0.91579 1.02919 1.03501 0.92199 0.88881 0.91887 0.90880 0.91151 0.93358 0.92422 0.86773 0.88875 0.94090 0.85488 0.87881 0.88260 0.88527 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.36 -6.03 8.91 -39.24 -0.35 -6.38 16 3 C 0.47 8.91 6.21 36.01 0.22 9.14 16 4 O -0.44 -9.46 10.46 -18.75 -0.20 -9.65 16 5 C 0.10 1.82 0.55 -158.45 -0.09 1.73 16 6 C 0.25 5.19 8.05 -20.74 -0.17 5.03 16 7 N -0.42 -9.57 17.01 42.17 0.72 -8.86 16 8 C -0.06 -1.08 4.14 -26.73 -0.11 -1.19 16 9 C 0.00 0.00 1.55 -155.66 -0.24 -0.25 16 10 C -0.50 -13.70 7.89 -34.44 -0.27 -13.98 16 11 H 0.07 2.03 3.90 -52.48 -0.20 1.82 16 12 C 0.07 1.90 5.28 -17.82 -0.09 1.80 16 13 N -0.87 -24.94 8.62 55.43 0.48 -24.46 16 14 Si 0.88 22.50 29.54 -169.99 -5.02 17.48 16 15 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 18 C -0.14 -3.51 6.65 -26.69 -0.18 -3.69 16 19 C -0.20 -5.00 9.41 -26.69 -0.25 -5.25 16 20 C -0.15 -2.02 5.05 -90.58 -0.46 -2.47 16 21 C -0.17 -1.96 9.16 -26.73 -0.24 -2.21 16 22 C -0.17 -2.11 9.74 -26.69 -0.26 -2.37 16 23 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 24 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 26 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 27 H 0.07 1.23 8.08 -51.92 -0.42 0.81 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.06 1.38 6.52 -51.93 -0.34 1.04 16 30 H 0.11 3.27 5.80 -51.93 -0.30 2.97 16 31 H 0.09 2.58 6.77 -51.93 -0.35 2.23 16 32 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 33 H 0.13 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.10 1.38 7.19 -51.93 -0.37 1.01 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 1.38 6.56 -51.93 -0.34 1.03 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 298.34 15.07 4.50 4.50 Total: -1.00 -31.53 298.34 -5.79 -37.33 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.85 Total: 2.18 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -1.07 Total: -12.14 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 1.20 Total: -33.32 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.55 Total: -16.03 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.53 -5.79 -37.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708773606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.650 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds