Wall clock time and date at job start Mon Mar 30 2020 07:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00204 * 2 1 4 4 O 1.20828 * 120.00140 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00145 * 180.02562 * 3 2 1 6 6 C 1.47203 * 109.46757 * 299.99476 * 5 3 2 7 7 N 3.71836 * 145.02257 * 87.50902 * 2 1 3 8 8 C 1.52996 * 109.47270 * 179.97438 * 5 3 2 9 9 C 1.53000 * 109.47442 * 54.42077 * 8 5 3 10 10 C 1.50703 * 115.54775 * 53.26467 * 9 8 5 11 11 H 1.08004 * 120.00077 * 5.62324 * 10 9 8 12 12 C 1.37879 * 119.99834 * 185.63062 * 10 9 8 13 13 N 1.31508 * 119.99885 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99846 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46903 * 89.99947 * 14 12 10 16 16 H 1.48499 * 109.47079 * 209.99678 * 14 12 10 17 17 H 1.48503 * 109.47453 * 330.00129 * 14 12 10 18 18 C 1.52997 * 117.49965 * 267.59150 * 9 8 5 19 19 C 1.52999 * 117.50021 * 198.92680 * 9 8 5 20 20 C 1.52995 * 109.47305 * 59.99061 * 5 3 2 21 21 C 1.52995 * 117.50219 * 293.93632 * 20 5 3 22 22 C 1.53001 * 60.03561 * 252.49577 * 21 20 5 23 23 H 1.09005 * 109.47054 * 60.00197 * 1 2 3 24 24 H 1.08999 * 109.47513 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46965 * 300.01138 * 1 2 3 26 26 H 1.08998 * 109.47349 * 174.42798 * 8 5 3 27 27 H 1.09008 * 109.47008 * 294.42252 * 8 5 3 28 28 H 0.97004 * 119.99620 * 179.97438 * 13 12 10 29 29 H 1.09000 * 117.49721 * 359.97438 * 18 9 8 30 30 H 1.09002 * 117.49948 * 145.02330 * 18 9 8 31 31 H 1.08993 * 117.50239 * 214.98210 * 19 9 8 32 32 H 1.09007 * 117.49616 * 359.97438 * 19 9 8 33 33 H 1.08999 * 115.55994 * 79.62746 * 20 5 3 34 34 H 1.09002 * 117.49840 * 0.02562 * 21 20 5 35 35 H 1.09005 * 117.50163 * 144.99708 * 21 20 5 36 36 H 1.09006 * 117.49639 * 107.49508 * 22 21 20 37 37 H 1.08995 * 117.50285 * 252.52487 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0931 0.6073 1.2011 7 7 4.4988 0.0926 2.1295 8 6 4.0002 2.7420 -0.0011 9 6 3.3405 3.4694 1.1721 10 6 3.5417 2.8368 2.5251 11 1 4.1942 1.9825 2.6301 12 6 2.8927 3.3484 3.6287 13 7 2.0986 4.3888 3.5008 14 14 3.1416 2.5639 5.3056 15 1 4.2897 3.2115 5.9896 16 1 1.9143 2.7419 6.1224 17 1 3.4188 1.1146 5.1379 18 6 2.0039 4.1662 0.9098 19 6 3.2743 4.9966 1.1093 20 6 4.1129 0.5813 -1.2500 21 6 3.9082 -0.9305 -1.3656 22 6 5.3000 -0.3683 -1.0697 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 5.0841 2.8004 0.0983 27 1 3.6954 3.2106 -0.9369 28 1 1.6418 4.7486 4.2773 29 1 1.5948 4.1067 -0.0988 30 1 1.2702 4.1674 1.7159 31 1 3.3758 5.5438 2.0465 32 1 3.7012 5.4832 0.2322 33 1 4.0718 1.1665 -2.1687 34 1 3.3836 -1.4310 -0.5517 35 1 3.7318 -1.3399 -2.3603 36 1 5.6915 -0.4989 -0.0608 37 1 6.0392 -0.4073 -1.8697 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708773606.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:08 Heat of formation + Delta-G solvation = 14.539139 kcal Electronic energy + Delta-G solvation = -21210.450858 eV Core-core repulsion = 18149.000600 eV Total energy + Delta-G solvation = -3061.450258 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.96381 -39.51726 -38.32370 -37.06738 -36.71181 -33.96016 -32.75083 -28.83910 -27.76495 -26.13482 -23.41970 -23.07206 -22.83625 -22.07526 -20.78441 -19.41074 -18.19678 -17.88440 -17.57243 -16.93547 -16.49083 -15.93582 -15.36339 -15.21570 -14.77053 -14.36423 -14.15585 -13.95932 -13.86964 -13.31250 -13.29041 -13.03406 -12.94504 -12.76806 -12.54329 -12.39669 -12.22770 -12.03969 -11.83056 -11.57320 -11.51003 -11.28672 -11.10531 -10.96839 -10.55741 -9.97237 -9.65773 -8.01565 -6.12573 1.14289 1.24024 1.26864 1.38160 1.58995 1.86181 2.16246 2.33767 2.84141 2.94593 3.05909 3.50849 3.74594 3.93837 4.12491 4.22914 4.32112 4.42060 4.43847 4.46773 4.66988 4.73880 4.82342 4.88510 4.98140 5.04155 5.10358 5.22037 5.35082 5.36166 5.42065 5.55810 5.64183 5.71197 6.07243 6.35396 6.53134 6.59979 6.93444 7.00286 7.45242 8.88650 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.009077 C = 0.008595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.541033 B = 3083.948797 C = 3257.047430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.468 3.532 4 O -0.473 6.473 5 C 0.098 3.902 6 C 0.265 3.735 7 N -0.469 5.469 8 C -0.052 4.052 9 C -0.006 4.006 10 C -0.510 4.510 11 H 0.074 0.926 12 C 0.023 3.977 13 N -0.889 5.889 14 Si 0.920 3.080 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.280 1.280 18 C -0.131 4.131 19 C -0.202 4.202 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.170 4.170 23 H 0.074 0.926 24 H 0.131 0.869 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.253 0.747 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.161 0.839 34 H 0.082 0.918 35 H 0.133 0.867 36 H 0.069 0.931 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.529 -9.092 -14.316 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.280 6.280 3 C 0.308 3.692 4 O -0.358 6.358 5 C 0.094 3.906 6 C -0.051 4.051 7 N -0.145 5.145 8 C -0.090 4.090 9 C -0.007 4.007 10 C -0.548 4.548 11 H 0.092 0.908 12 C -0.177 4.177 13 N -0.527 5.527 14 Si 0.747 3.253 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.205 1.205 18 C -0.169 4.169 19 C -0.240 4.240 20 C -0.175 4.175 21 C -0.194 4.194 22 C -0.207 4.207 23 H 0.092 0.908 24 H 0.149 0.851 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.117 0.883 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.178 0.822 34 H 0.100 0.900 35 H 0.151 0.849 36 H 0.088 0.912 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.771 -9.465 -12.772 15.915 hybrid contribution -0.497 0.414 1.614 1.739 sum 0.275 -9.050 -11.158 14.370 Atomic orbital electron populations 1.23466 0.75287 1.05273 1.02156 1.86470 1.24490 1.32825 1.84183 1.23180 0.90956 0.81857 0.73169 1.90866 1.66923 1.35096 1.42899 1.17722 0.87541 0.97446 0.87927 1.28042 0.93109 0.90887 0.93103 1.81080 1.10025 1.13069 1.10363 1.21112 1.00670 0.88241 0.99024 1.19124 0.98575 0.90387 0.92591 1.21613 1.25976 1.14827 0.92401 0.90824 1.25490 0.95515 0.95575 1.01131 1.70183 1.29744 1.23728 1.29085 0.86126 0.77649 0.79055 0.82438 1.20186 1.20781 1.20524 1.22635 0.92047 1.03445 0.98781 1.22795 1.05693 0.96344 0.99213 1.22368 1.05247 0.93905 0.96028 1.23137 0.98408 0.93250 1.04634 1.23206 0.92247 1.02088 1.03197 0.90757 0.85059 0.94084 0.89726 0.88312 0.93746 0.90805 0.90513 0.92270 0.91033 0.82152 0.89963 0.84900 0.91223 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.98 16 2 O -0.36 -11.44 8.91 -51.37 -0.46 -11.90 16 3 C 0.47 17.08 6.21 71.24 0.44 17.52 16 4 O -0.47 -19.76 10.46 21.96 0.23 -19.53 16 5 C 0.10 3.32 0.55 -54.74 -0.03 3.29 16 6 C 0.26 10.73 8.05 89.44 0.72 11.45 16 7 N -0.47 -21.23 17.01 20.01 0.34 -20.89 16 8 C -0.05 -1.91 4.14 30.59 0.13 -1.79 16 9 C -0.01 -0.31 1.55 -52.93 -0.08 -0.40 16 10 C -0.51 -28.19 7.89 25.60 0.20 -27.99 16 11 H 0.07 4.04 3.90 -2.91 -0.01 4.03 16 12 C 0.02 1.30 5.28 84.66 0.45 1.75 16 13 N -0.89 -52.22 8.62 21.45 0.18 -52.04 16 14 Si 0.92 47.10 29.54 68.60 2.03 49.13 16 15 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 16 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 17 H -0.28 -14.73 7.11 99.48 0.71 -14.02 16 18 C -0.13 -6.62 6.65 30.62 0.20 -6.42 16 19 C -0.20 -10.01 9.41 30.62 0.29 -9.72 16 20 C -0.16 -3.56 5.05 -10.77 -0.05 -3.62 16 21 C -0.16 -3.16 9.16 30.59 0.28 -2.88 16 22 C -0.17 -3.55 9.74 30.62 0.30 -3.25 16 23 H 0.07 1.65 8.13 -2.38 -0.02 1.63 16 24 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.04 1.20 8.13 -2.39 -0.02 1.18 16 26 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.10 3.06 8.08 -2.38 -0.02 3.04 16 28 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.07 3.45 6.52 -2.39 -0.02 3.44 16 30 H 0.08 4.50 5.80 -2.39 -0.01 4.49 16 31 H 0.06 3.33 6.77 -2.39 -0.02 3.31 16 32 H 0.07 3.05 8.14 -2.38 -0.02 3.03 16 33 H 0.16 2.62 8.14 -2.39 -0.02 2.60 16 34 H 0.08 2.02 7.19 -2.39 -0.02 2.01 16 35 H 0.13 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.07 1.87 6.56 -2.38 -0.02 1.85 16 37 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -70.25 298.34 7.45 -62.80 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.09 Total: 12.48 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 4.04 Total: -20.05 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: 0.53 Total: -72.93 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.23 Total: -31.43 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -70.25 7.45 -62.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708773606.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.342 kcal (2) G-P(sol) polarization free energy of solvation -70.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds