Wall clock time and date at job start Mon Mar 30 2020 06:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29392 * 120.00355 * 2 1 4 4 O 1.41602 * 119.99800 * 359.97438 * 3 2 1 5 5 C 1.47525 * 119.99952 * 179.97438 * 2 1 3 6 6 C 1.39692 * 120.09703 * 179.97438 * 5 2 1 7 7 C 1.37780 * 119.90875 * 179.97438 * 6 5 2 8 8 C 1.38916 * 120.09590 * 0.02562 * 7 6 5 9 9 O 1.35802 * 119.90645 * 179.97438 * 8 7 6 10 10 C 1.42896 * 117.00452 * 354.54701 * 9 8 7 11 11 H 1.09005 * 109.46991 * 324.87240 * 10 9 8 12 12 C 1.53002 * 109.47166 * 84.86957 * 10 9 8 13 13 C 1.53004 * 109.47148 * 204.87077 * 10 9 8 14 14 C 1.50700 * 109.47054 * 65.00158 * 13 10 9 15 15 H 1.07994 * 119.99984 * 359.97438 * 14 13 10 16 16 C 1.37876 * 119.99683 * 179.97438 * 14 13 10 17 17 N 1.31522 * 120.00193 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00080 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46866 * 60.00376 * 18 16 14 20 20 H 1.48502 * 109.47363 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47006 * 300.00386 * 18 16 14 22 22 C 1.38922 * 120.18240 * 0.25001 * 8 7 6 23 23 C 1.37777 * 120.09462 * 359.49050 * 22 8 7 24 24 H 1.09001 * 109.47216 * 270.00361 * 1 2 3 25 25 H 1.08997 * 109.46807 * 30.00106 * 1 2 3 26 26 H 1.08994 * 109.47220 * 150.00209 * 1 2 3 27 27 H 0.96701 * 114.00043 * 180.02562 * 4 3 2 28 28 H 1.08007 * 120.04214 * 359.95940 * 6 5 2 29 29 H 1.08007 * 119.95087 * 179.97438 * 7 6 5 30 30 H 1.08995 * 109.47022 * 60.00259 * 12 10 9 31 31 H 1.08995 * 109.47212 * 180.02562 * 12 10 9 32 32 H 1.09003 * 109.46738 * 300.00443 * 12 10 9 33 33 H 1.09008 * 109.46317 * 184.99953 * 13 10 9 34 34 H 1.08993 * 109.46807 * 304.99313 * 13 10 9 35 35 H 0.96994 * 120.00049 * 179.97438 * 17 16 14 36 36 H 1.08006 * 119.95005 * 179.74700 * 22 8 7 37 37 H 1.08005 * 120.05025 * 180.25312 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1540 1.1205 0.0000 4 8 1.4461 2.3469 -0.0005 5 6 2.2446 -1.2776 0.0006 6 6 3.6416 -1.2800 0.0000 7 6 4.3265 -2.4755 0.0011 8 6 3.6300 -3.6774 0.0022 9 8 4.3090 -4.8535 0.0027 10 6 5.7310 -4.7817 -0.1189 11 1 5.9982 -3.9535 -0.7752 12 6 6.3503 -4.5582 1.2622 13 6 6.2591 -6.0909 -0.7089 14 6 5.7462 -6.2504 -2.1169 15 1 5.1071 -5.4939 -2.5477 16 6 6.0928 -7.3621 -2.8550 17 7 6.8715 -8.2832 -2.3306 18 14 5.4565 -7.5602 -4.6001 19 1 5.9221 -6.4196 -5.4292 20 1 5.9702 -8.8303 -5.1732 21 1 3.9718 -7.5879 -4.5854 22 6 2.2408 -3.6796 -0.0031 23 6 1.5480 -2.4886 0.0013 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 2.0145 3.1292 -0.0009 28 1 4.1839 -0.3459 -0.0015 29 1 5.4066 -2.4781 0.0003 30 1 6.0832 -5.3864 1.9185 31 1 7.4349 -4.5030 1.1694 32 1 5.9740 -3.6255 1.6825 33 1 7.3490 -6.0711 -0.7192 34 1 5.9167 -6.9278 -0.1003 35 1 7.1151 -9.0654 -2.8497 36 1 1.7030 -4.6162 -0.0063 37 1 0.4680 -2.4912 0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709998834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:29 Heat of formation + Delta-G solvation = -18.654031 kcal Electronic energy + Delta-G solvation = -19046.634669 eV Core-core repulsion = 15983.745047 eV Total energy + Delta-G solvation = -3062.889622 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.96689 -38.11502 -36.71656 -34.14672 -33.30847 -31.74431 -30.93147 -28.96187 -28.28928 -27.48445 -23.72088 -22.81985 -22.60985 -20.37128 -19.43290 -17.84826 -16.99821 -16.41070 -16.14216 -15.49994 -14.74393 -14.66787 -14.50526 -14.37306 -14.19247 -13.50531 -13.16641 -12.89793 -12.73468 -12.48305 -12.13708 -11.96606 -11.87575 -11.62667 -11.41377 -11.26174 -10.77037 -10.73166 -10.53276 -10.15476 -9.94420 -9.74428 -9.41486 -9.14158 -8.89365 -8.41386 -7.68076 -6.04618 -4.06498 0.95784 1.52238 2.44287 2.98453 3.32921 3.36893 3.40352 3.79194 4.00434 4.43703 4.43786 4.96434 5.01979 5.04115 5.32387 5.33678 5.37696 5.44074 5.56505 5.63729 5.69745 5.73972 5.84741 5.93112 6.13779 6.17364 6.38975 6.46088 6.50022 6.59398 6.72074 6.77323 6.88660 7.44531 7.53713 7.62740 7.91463 8.04386 8.31842 8.96906 9.57211 11.06710 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025626 B = 0.004128 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.398717 B = 6781.245936 C = 7276.345411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.189 3.811 3 N -0.351 5.351 4 O -0.417 6.417 5 C -0.121 4.121 6 C -0.034 4.034 7 C -0.224 4.224 8 C 0.175 3.825 9 O -0.286 6.286 10 C 0.084 3.916 11 H 0.065 0.935 12 C -0.178 4.178 13 C 0.026 3.974 14 C -0.517 4.517 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.167 4.167 23 C -0.048 4.048 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.400 0.600 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.029 0.971 35 H 0.262 0.738 36 H 0.136 0.864 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.056 14.736 6.416 18.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.001 3.999 3 N -0.096 5.096 4 O -0.324 6.324 5 C -0.123 4.123 6 C -0.054 4.054 7 C -0.242 4.242 8 C 0.126 3.874 9 O -0.197 6.197 10 C 0.029 3.971 11 H 0.083 0.917 12 C -0.236 4.236 13 C -0.011 4.011 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.186 4.186 23 C -0.068 4.068 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.247 0.753 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.154 0.846 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.681 14.445 6.391 18.024 hybrid contribution -0.501 0.338 -1.004 1.172 sum -9.182 14.783 5.386 18.217 Atomic orbital electron populations 1.21277 0.91846 1.04024 1.03575 1.23169 0.94310 0.90873 0.91523 1.76591 1.23452 0.91549 1.17986 1.88365 1.34943 1.13335 1.95736 1.17977 0.92822 0.89471 1.12043 1.21066 0.92843 0.97787 0.93721 1.21369 1.01019 0.91910 1.09948 1.19490 0.92114 0.85971 0.89837 1.86279 1.22405 1.26337 1.84710 1.22960 0.76011 1.03066 0.95099 0.91700 1.22422 1.01424 1.01532 0.98189 1.19272 0.96268 0.89577 0.95972 1.21080 1.30275 1.06052 0.98089 0.92623 1.24974 0.95105 0.95794 0.98392 1.69937 1.35993 1.10290 1.37353 0.86635 0.79378 0.77322 0.84587 1.20243 1.21255 1.20127 1.20382 0.91344 0.98835 1.08015 1.20963 0.99549 0.90372 0.95870 0.89978 0.90438 0.90139 0.75269 0.85295 0.84660 0.91818 0.91241 0.93178 0.94271 0.95226 0.92835 0.84623 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.27 36.01 0.33 -1.13 16 2 C 0.19 2.40 7.11 -79.83 -0.57 1.83 16 3 N -0.35 -4.68 11.23 35.07 0.39 -4.29 16 4 O -0.42 -4.69 13.73 -11.47 -0.16 -4.84 16 5 C -0.12 -1.64 5.87 -105.02 -0.62 -2.25 16 6 C -0.03 -0.49 9.57 -39.21 -0.38 -0.86 16 7 C -0.22 -3.49 8.21 -39.50 -0.32 -3.81 16 8 C 0.18 3.03 6.61 -39.08 -0.26 2.77 16 9 O -0.29 -5.83 9.54 -19.12 -0.18 -6.02 16 10 C 0.08 1.68 2.17 -26.73 -0.06 1.62 16 11 H 0.07 1.26 6.31 -51.93 -0.33 0.94 16 12 C -0.18 -2.91 9.17 37.16 0.34 -2.57 16 13 C 0.03 0.64 4.68 -27.88 -0.13 0.51 16 14 C -0.52 -14.36 8.88 -34.44 -0.31 -14.67 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 18 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.17 -2.49 9.97 -39.50 -0.39 -2.89 16 23 C -0.05 -0.60 9.35 -39.20 -0.37 -0.96 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.79 7.35 -51.93 -0.38 0.40 16 26 H 0.08 0.66 6.47 -51.93 -0.34 0.32 16 27 H 0.40 2.63 9.28 45.56 0.42 3.05 16 28 H 0.13 1.70 7.55 -52.48 -0.40 1.31 16 29 H 0.14 2.01 5.40 -52.48 -0.28 1.73 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.72 6.89 -51.93 -0.36 0.36 16 33 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 37 H 0.13 1.23 6.35 -52.48 -0.33 0.90 16 LS Contribution 315.40 15.07 4.75 4.75 Total: -1.00 -31.73 315.40 -6.37 -38.10 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.07 Total: 2.23 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: -2.82 Total: -20.84 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 1.13 Total: -29.97 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -0.34 Total: -10.86 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.73 -6.37 -38.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709998834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.445 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds