Wall clock time and date at job start Mon Mar 30 2020 06:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29392 * 120.00355 * 2 1 4 4 O 1.41602 * 119.99800 * 359.97438 * 3 2 1 5 5 C 1.47525 * 119.99952 * 179.97438 * 2 1 3 6 6 C 1.39692 * 120.09703 * 179.97438 * 5 2 1 7 7 C 1.37780 * 119.90875 * 179.97438 * 6 5 2 8 8 C 1.38916 * 120.09590 * 0.02562 * 7 6 5 9 9 O 1.35802 * 119.90645 * 179.97438 * 8 7 6 10 10 C 1.42896 * 117.00452 * 354.54701 * 9 8 7 11 11 H 1.09005 * 109.46991 * 324.87240 * 10 9 8 12 12 C 1.53002 * 109.47166 * 84.86957 * 10 9 8 13 13 C 1.53004 * 109.47148 * 204.87077 * 10 9 8 14 14 C 1.50700 * 109.47054 * 65.00158 * 13 10 9 15 15 H 1.07994 * 119.99984 * 359.97438 * 14 13 10 16 16 C 1.37876 * 119.99683 * 179.97438 * 14 13 10 17 17 N 1.31522 * 120.00193 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00080 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46866 * 60.00376 * 18 16 14 20 20 H 1.48502 * 109.47363 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47006 * 300.00386 * 18 16 14 22 22 C 1.38922 * 120.18240 * 0.25001 * 8 7 6 23 23 C 1.37777 * 120.09462 * 359.49050 * 22 8 7 24 24 H 1.09001 * 109.47216 * 270.00361 * 1 2 3 25 25 H 1.08997 * 109.46807 * 30.00106 * 1 2 3 26 26 H 1.08994 * 109.47220 * 150.00209 * 1 2 3 27 27 H 0.96701 * 114.00043 * 180.02562 * 4 3 2 28 28 H 1.08007 * 120.04214 * 359.95940 * 6 5 2 29 29 H 1.08007 * 119.95087 * 179.97438 * 7 6 5 30 30 H 1.08995 * 109.47022 * 60.00259 * 12 10 9 31 31 H 1.08995 * 109.47212 * 180.02562 * 12 10 9 32 32 H 1.09003 * 109.46738 * 300.00443 * 12 10 9 33 33 H 1.09008 * 109.46317 * 184.99953 * 13 10 9 34 34 H 1.08993 * 109.46807 * 304.99313 * 13 10 9 35 35 H 0.96994 * 120.00049 * 179.97438 * 17 16 14 36 36 H 1.08006 * 119.95005 * 179.74700 * 22 8 7 37 37 H 1.08005 * 120.05025 * 180.25312 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1540 1.1205 0.0000 4 8 1.4461 2.3469 -0.0005 5 6 2.2446 -1.2776 0.0006 6 6 3.6416 -1.2800 0.0000 7 6 4.3265 -2.4755 0.0011 8 6 3.6300 -3.6774 0.0022 9 8 4.3090 -4.8535 0.0027 10 6 5.7310 -4.7817 -0.1189 11 1 5.9982 -3.9535 -0.7752 12 6 6.3503 -4.5582 1.2622 13 6 6.2591 -6.0909 -0.7089 14 6 5.7462 -6.2504 -2.1169 15 1 5.1071 -5.4939 -2.5477 16 6 6.0928 -7.3621 -2.8550 17 7 6.8715 -8.2832 -2.3306 18 14 5.4565 -7.5602 -4.6001 19 1 5.9221 -6.4196 -5.4292 20 1 5.9702 -8.8303 -5.1732 21 1 3.9718 -7.5879 -4.5854 22 6 2.2408 -3.6796 -0.0031 23 6 1.5480 -2.4886 0.0013 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5138 27 1 2.0145 3.1292 -0.0009 28 1 4.1839 -0.3459 -0.0015 29 1 5.4066 -2.4781 0.0003 30 1 6.0832 -5.3864 1.9185 31 1 7.4349 -4.5030 1.1694 32 1 5.9740 -3.6255 1.6825 33 1 7.3490 -6.0711 -0.7192 34 1 5.9167 -6.9278 -0.1003 35 1 7.1151 -9.0654 -2.8497 36 1 1.7030 -4.6162 -0.0063 37 1 0.4680 -2.4912 0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709998834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:28 Heat of formation + Delta-G solvation = -38.940801 kcal Electronic energy + Delta-G solvation = -19047.514369 eV Core-core repulsion = 15983.745047 eV Total energy + Delta-G solvation = -3063.769323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.23055 -39.28298 -37.75427 -35.58880 -34.78382 -33.40822 -32.10534 -30.10234 -29.42208 -29.04605 -25.39952 -24.28293 -23.74782 -21.77835 -20.56885 -19.19226 -18.52015 -17.90430 -17.14842 -16.93010 -16.37942 -16.04844 -15.71712 -15.37997 -15.23075 -14.81113 -14.42254 -14.36587 -13.86256 -13.65867 -13.50637 -13.36896 -13.22944 -13.13181 -12.80265 -12.66833 -12.59188 -12.35386 -11.96906 -11.74890 -11.30104 -11.16285 -10.86859 -10.68222 -10.57780 -9.99905 -8.88576 -8.20684 -6.29909 -0.11845 0.40983 1.39649 1.40532 1.42061 1.50024 2.13848 2.40845 2.42732 2.87886 3.14044 3.52516 3.86766 3.95043 4.06559 4.21111 4.22838 4.33472 4.39998 4.50244 4.61340 4.67057 4.72823 4.84889 5.00320 5.01701 5.10773 5.19286 5.35422 5.37276 5.39241 5.46730 5.50638 5.76381 5.82114 5.94785 6.18678 6.64719 6.81948 6.84665 7.37834 8.90812 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025626 B = 0.004128 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.398717 B = 6781.245936 C = 7276.345411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.179 3.821 3 N -0.371 5.371 4 O -0.417 6.417 5 C -0.117 4.117 6 C -0.041 4.041 7 C -0.227 4.227 8 C 0.140 3.860 9 O -0.315 6.315 10 C 0.092 3.908 11 H 0.067 0.933 12 C -0.168 4.168 13 C 0.028 3.972 14 C -0.533 4.533 15 H 0.052 0.948 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.959 3.041 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.271 1.271 22 C -0.174 4.174 23 C -0.034 4.034 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.417 0.583 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.000 1.000 35 H 0.265 0.735 36 H 0.142 0.858 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.851 16.457 6.079 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.009 4.009 3 N -0.114 5.114 4 O -0.328 6.328 5 C -0.119 4.119 6 C -0.060 4.060 7 C -0.245 4.245 8 C 0.093 3.907 9 O -0.228 6.228 10 C 0.037 3.963 11 H 0.085 0.915 12 C -0.225 4.225 13 C -0.009 4.009 14 C -0.571 4.571 15 H 0.070 0.930 16 C -0.193 4.193 17 N -0.571 5.571 18 Si 0.783 3.217 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.196 1.196 22 C -0.193 4.193 23 C -0.054 4.054 24 H 0.113 0.887 25 H 0.092 0.908 26 H 0.118 0.882 27 H 0.268 0.732 28 H 0.155 0.845 29 H 0.154 0.846 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.018 0.982 35 H 0.073 0.927 36 H 0.159 0.841 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.470 16.194 6.061 20.214 hybrid contribution -0.015 -0.042 -0.869 0.870 sum -10.485 16.152 5.192 19.945 Atomic orbital electron populations 1.21323 0.89632 1.04818 1.04643 1.23305 0.95791 0.90244 0.91546 1.76480 1.24611 0.92482 1.17850 1.88338 1.35573 1.13379 1.95540 1.18224 0.92655 0.90480 1.10498 1.21202 0.93572 0.97516 0.93754 1.21392 1.01177 0.91874 1.10096 1.19800 0.93020 0.85428 0.92465 1.86185 1.22154 1.28445 1.86029 1.22632 0.76757 0.99998 0.96911 0.91513 1.22320 1.01932 1.02384 0.95903 1.19118 0.95472 0.91432 0.94830 1.21439 1.30092 1.06067 0.99495 0.92977 1.25846 0.95302 0.95495 1.02680 1.70055 1.37189 1.10849 1.39021 0.85597 0.78874 0.77653 0.79547 1.19256 1.20569 1.19574 1.20625 0.90578 1.00161 1.07887 1.21295 1.01283 0.88929 0.93856 0.88656 0.90773 0.88235 0.73180 0.84520 0.84572 0.92318 0.90050 0.90996 0.95679 0.98153 0.92668 0.84065 0.81225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.27 71.24 0.66 -1.69 16 2 C 0.18 4.05 7.11 45.37 0.32 4.37 16 3 N -0.37 -9.04 11.23 -42.95 -0.48 -9.52 16 4 O -0.42 -8.35 13.73 -38.79 -0.53 -8.88 16 5 C -0.12 -2.88 5.87 -20.12 -0.12 -3.00 16 6 C -0.04 -1.10 9.57 22.51 0.22 -0.89 16 7 C -0.23 -6.94 8.21 22.32 0.18 -6.75 16 8 C 0.14 4.83 6.61 22.60 0.15 4.98 16 9 O -0.32 -13.14 9.54 -91.33 -0.87 -14.01 16 10 C 0.09 3.79 2.17 30.60 0.07 3.85 16 11 H 0.07 2.65 6.31 -2.38 -0.02 2.64 16 12 C -0.17 -5.48 9.17 71.98 0.66 -4.82 16 13 C 0.03 1.47 4.68 29.85 0.14 1.61 16 14 C -0.53 -30.34 8.88 25.60 0.23 -30.11 16 15 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 16 C 0.00 0.27 5.46 84.65 0.46 0.73 16 17 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 18 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 22 C -0.17 -4.97 9.97 22.32 0.22 -4.75 16 23 C -0.03 -0.76 9.35 22.52 0.21 -0.55 16 24 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 1.27 7.35 -2.39 -0.02 1.26 16 26 H 0.10 1.19 6.47 -2.39 -0.02 1.18 16 27 H 0.42 4.53 9.28 -74.06 -0.69 3.84 16 28 H 0.14 3.43 7.55 -2.91 -0.02 3.41 16 29 H 0.14 4.01 5.40 -2.91 -0.02 4.00 16 30 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.07 2.01 6.89 -2.39 -0.02 2.00 16 33 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.00 0.00 8.14 -2.39 -0.02 -0.01 16 35 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 36 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 37 H 0.17 2.43 6.35 -2.91 -0.02 2.41 16 Total: -1.00 -69.02 315.40 4.23 -64.79 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.40 Total: 13.81 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 3.40 Total: -37.01 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -0.20 Total: -65.28 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -1.40 Total: -22.89 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -69.02 4.23 -64.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709998834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.853 kcal (2) G-P(sol) polarization free energy of solvation -69.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds