Wall clock time and date at job start Mon Mar 30 2020 06:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29392 * 120.00321 * 2 1 4 4 O 1.41603 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.47529 * 119.99612 * 180.02562 * 2 1 3 6 6 C 1.39695 * 120.09078 * 180.02562 * 5 2 1 7 7 C 1.37779 * 119.90703 * 179.97438 * 6 5 2 8 8 C 1.38925 * 120.09207 * 359.97438 * 7 6 5 9 9 O 1.35811 * 119.90638 * 179.97438 * 8 7 6 10 10 C 1.42895 * 116.99710 * 185.36066 * 9 8 7 11 11 H 1.08998 * 109.47718 * 35.39715 * 10 9 8 12 12 C 1.53000 * 109.46657 * 275.39632 * 10 9 8 13 13 C 1.53003 * 109.46848 * 155.39995 * 10 9 8 14 14 C 1.50696 * 109.46954 * 294.99364 * 13 10 9 15 15 H 1.07994 * 120.00158 * 0.02562 * 14 13 10 16 16 C 1.37883 * 119.99940 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99864 * 359.72878 * 16 14 13 18 18 Si 1.86792 * 120.00035 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47073 * 179.72870 * 18 16 14 20 20 H 1.48509 * 109.47128 * 299.72438 * 18 16 14 21 21 H 1.48496 * 109.47360 * 59.72896 * 18 16 14 22 22 C 1.38911 * 120.18348 * 0.25825 * 8 7 6 23 23 C 1.37788 * 120.09774 * 359.48864 * 22 8 7 24 24 H 1.08998 * 109.46837 * 269.99716 * 1 2 3 25 25 H 1.09000 * 109.46861 * 29.99209 * 1 2 3 26 26 H 1.08993 * 109.47636 * 149.99368 * 1 2 3 27 27 H 0.96697 * 113.99783 * 179.97438 * 4 3 2 28 28 H 1.08002 * 120.04806 * 359.94420 * 6 5 2 29 29 H 1.08001 * 119.95909 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46742 * 180.02562 * 12 10 9 31 31 H 1.09000 * 109.47645 * 299.99659 * 12 10 9 32 32 H 1.08998 * 109.47467 * 60.00874 * 12 10 9 33 33 H 1.09008 * 109.46800 * 174.99517 * 13 10 9 34 34 H 1.08998 * 109.47250 * 54.99650 * 13 10 9 35 35 H 0.97008 * 119.99773 * 0.27155 * 17 16 14 36 36 H 1.08007 * 119.95228 * 179.74630 * 22 8 7 37 37 H 1.07996 * 120.04792 * 180.25278 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1540 1.1205 0.0000 4 8 1.4461 2.3469 0.0005 5 6 2.2446 -1.2777 -0.0006 6 6 3.6415 -1.2800 0.0000 7 6 4.3265 -2.4754 0.0000 8 6 3.6299 -3.6774 0.0000 9 8 4.3089 -4.8536 -0.0006 10 6 3.5353 -6.0491 -0.1195 11 1 2.6854 -5.8682 -0.7775 12 6 3.0301 -6.4691 1.2623 13 6 4.4053 -7.1634 -0.7048 14 6 4.8019 -6.8035 -2.1134 15 1 4.4674 -5.8730 -2.5475 16 6 5.5929 -7.6618 -2.8475 17 7 6.0056 -8.7920 -2.3165 18 14 6.0851 -7.2154 -4.5932 19 1 6.9353 -8.2935 -5.1588 20 1 4.8659 -7.0580 -5.4264 21 1 6.8453 -5.9398 -4.5824 22 6 2.2408 -3.6796 -0.0054 23 6 1.5480 -2.4885 -0.0002 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8901 -0.5137 26 1 -0.3634 -0.8898 -0.5139 27 1 2.0145 3.1291 0.0009 28 1 4.1839 -0.3460 -0.0001 29 1 5.4065 -2.4782 0.0000 30 1 2.4404 -7.3814 1.1716 31 1 3.8799 -6.6503 1.9204 32 1 2.4103 -5.6754 1.6793 33 1 3.8429 -8.0971 -0.7129 34 1 5.3005 -7.2838 -0.0947 35 1 5.7502 -9.0236 -1.4098 36 1 1.7030 -4.6162 -0.0096 37 1 0.4680 -2.4912 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709998838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:32 Heat of formation + Delta-G solvation = -22.166656 kcal Electronic energy + Delta-G solvation = -19074.415389 eV Core-core repulsion = 16011.373448 eV Total energy + Delta-G solvation = -3063.041941 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.03263 -38.17266 -36.75920 -34.27581 -33.54103 -31.78355 -30.93143 -29.04300 -28.28461 -27.16042 -23.58755 -22.80115 -22.76331 -20.42642 -19.64570 -17.94898 -17.06801 -16.84203 -16.19822 -15.37949 -14.89084 -14.68345 -14.46101 -14.40701 -13.74150 -13.58399 -13.28416 -13.03437 -12.75797 -12.71301 -12.37741 -12.10951 -11.82569 -11.66225 -11.56125 -11.19626 -10.74593 -10.70826 -10.44327 -10.10740 -9.98398 -9.81049 -9.67031 -8.93485 -8.60878 -8.37491 -7.73405 -6.39513 -4.08554 0.91975 1.47498 2.40635 2.95680 3.43999 3.46503 3.64645 3.71536 3.96005 4.40318 4.53144 4.85807 4.99615 5.02919 5.29125 5.32049 5.38316 5.44749 5.46776 5.53499 5.60690 5.66760 5.80105 5.87899 6.03684 6.08922 6.31725 6.36543 6.46749 6.48450 6.59405 6.73630 6.83607 7.14104 7.25223 7.60036 7.93658 8.12296 8.41687 8.83388 9.61617 11.01239 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.004153 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.891418 B = 6740.645647 C = 7341.273393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.188 3.812 3 N -0.350 5.350 4 O -0.416 6.416 5 C -0.119 4.119 6 C -0.036 4.036 7 C -0.168 4.168 8 C 0.174 3.826 9 O -0.286 6.286 10 C 0.092 3.908 11 H 0.067 0.933 12 C -0.180 4.180 13 C 0.012 3.988 14 C -0.596 4.596 15 H 0.050 0.950 16 C 0.016 3.984 17 N -0.912 5.912 18 Si 1.068 2.932 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.287 1.287 22 C -0.222 4.222 23 C -0.045 4.045 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.400 0.600 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.029 0.971 34 H 0.020 0.980 35 H 0.268 0.732 36 H 0.136 0.864 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.108 14.954 6.444 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.001 3.999 3 N -0.094 5.094 4 O -0.323 6.323 5 C -0.121 4.121 6 C -0.056 4.056 7 C -0.187 4.187 8 C 0.125 3.875 9 O -0.198 6.198 10 C 0.036 3.964 11 H 0.085 0.915 12 C -0.237 4.237 13 C -0.025 4.025 14 C -0.635 4.635 15 H 0.068 0.932 16 C -0.187 4.187 17 N -0.549 5.549 18 Si 0.896 3.104 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.213 1.213 22 C -0.240 4.240 23 C -0.065 4.065 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.248 0.752 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.154 0.846 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.697 14.458 5.142 17.638 hybrid contribution -1.525 0.852 1.343 2.204 sum -10.222 15.310 6.485 19.517 Atomic orbital electron populations 1.21276 0.91851 1.04030 1.03568 1.23156 0.94303 0.90859 0.91612 1.76583 1.23455 0.91552 1.17844 1.88367 1.34938 1.13320 1.95716 1.17980 0.92873 0.89435 1.11841 1.21066 0.92787 0.97607 0.94161 1.20448 1.00808 0.89531 1.07909 1.19477 0.90619 0.87358 0.90034 1.86275 1.36483 1.12135 1.84857 1.22741 0.95053 0.83617 0.94966 0.91544 1.22444 1.01582 1.01506 0.98166 1.19384 0.94799 0.91342 0.96976 1.21934 1.35696 1.07397 0.98438 0.93187 1.25824 0.93932 0.93648 1.05325 1.70808 1.43937 1.23041 1.17094 0.83555 0.76479 0.75757 0.74622 1.20735 1.21437 1.21344 1.21294 0.93514 0.99212 1.10020 1.20969 0.99550 0.90594 0.95380 0.89991 0.90383 0.90195 0.75231 0.84826 0.84748 0.91277 0.91865 0.92919 0.95279 0.96154 0.92200 0.84608 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.27 36.01 0.33 -1.13 16 2 C 0.19 2.38 7.11 -79.83 -0.57 1.81 16 3 N -0.35 -4.61 11.23 35.07 0.39 -4.22 16 4 O -0.42 -4.62 13.73 -11.47 -0.16 -4.78 16 5 C -0.12 -1.61 5.87 -105.02 -0.62 -2.22 16 6 C -0.04 -0.51 9.57 -39.21 -0.38 -0.89 16 7 C -0.17 -2.66 9.97 -39.49 -0.39 -3.05 16 8 C 0.17 3.04 6.60 -39.08 -0.26 2.78 16 9 O -0.29 -5.91 9.55 -19.15 -0.18 -6.10 16 10 C 0.09 1.83 2.17 -26.73 -0.06 1.78 16 11 H 0.07 1.29 6.30 -51.93 -0.33 0.96 16 12 C -0.18 -2.87 9.16 37.16 0.34 -2.53 16 13 C 0.01 0.29 4.00 -27.88 -0.11 0.18 16 14 C -0.60 -16.79 8.88 -34.44 -0.31 -17.09 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 16 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 17 N -0.91 -27.64 13.65 55.43 0.76 -26.89 16 18 Si 1.07 25.41 29.90 -169.99 -5.08 20.33 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.22 -3.31 8.21 -39.50 -0.32 -3.63 16 23 C -0.04 -0.57 9.35 -39.20 -0.37 -0.94 16 24 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.08 0.79 7.35 -51.93 -0.38 0.41 16 26 H 0.08 0.66 6.47 -51.93 -0.34 0.32 16 27 H 0.40 2.56 9.28 45.56 0.42 2.99 16 28 H 0.13 1.72 7.55 -52.49 -0.40 1.32 16 29 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.73 6.89 -51.93 -0.36 0.38 16 33 H 0.03 0.73 8.01 -51.92 -0.42 0.31 16 34 H 0.02 0.53 8.00 -51.93 -0.42 0.12 16 35 H 0.27 8.00 7.22 -40.82 -0.29 7.71 16 36 H 0.14 1.90 5.40 -52.48 -0.28 1.62 16 37 H 0.13 1.24 6.35 -52.49 -0.33 0.90 16 LS Contribution 314.07 15.07 4.73 4.73 Total: -1.00 -32.61 314.07 -6.35 -38.96 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -4.01 Total: 2.53 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -2.80 Total: -24.57 kcal Atomic # 7 Polarization: -32.25 SS G_CDS: 1.15 Total: -31.10 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.34 Total: -10.88 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.61 -6.35 -38.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709998838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.794 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds