Wall clock time and date at job start Mon Mar 30 2020 06:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29392 * 120.00321 * 2 1 4 4 O 1.41603 * 119.99852 * 0.02562 * 3 2 1 5 5 C 1.47529 * 119.99612 * 180.02562 * 2 1 3 6 6 C 1.39695 * 120.09078 * 180.02562 * 5 2 1 7 7 C 1.37779 * 119.90703 * 179.97438 * 6 5 2 8 8 C 1.38925 * 120.09207 * 359.97438 * 7 6 5 9 9 O 1.35811 * 119.90638 * 179.97438 * 8 7 6 10 10 C 1.42895 * 116.99710 * 185.36066 * 9 8 7 11 11 H 1.08998 * 109.47718 * 35.39715 * 10 9 8 12 12 C 1.53000 * 109.46657 * 275.39632 * 10 9 8 13 13 C 1.53003 * 109.46848 * 155.39995 * 10 9 8 14 14 C 1.50696 * 109.46954 * 294.99364 * 13 10 9 15 15 H 1.07994 * 120.00158 * 0.02562 * 14 13 10 16 16 C 1.37883 * 119.99940 * 179.97438 * 14 13 10 17 17 N 1.31515 * 119.99864 * 359.72878 * 16 14 13 18 18 Si 1.86792 * 120.00035 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47073 * 179.72870 * 18 16 14 20 20 H 1.48509 * 109.47128 * 299.72438 * 18 16 14 21 21 H 1.48496 * 109.47360 * 59.72896 * 18 16 14 22 22 C 1.38911 * 120.18348 * 0.25825 * 8 7 6 23 23 C 1.37788 * 120.09774 * 359.48864 * 22 8 7 24 24 H 1.08998 * 109.46837 * 269.99716 * 1 2 3 25 25 H 1.09000 * 109.46861 * 29.99209 * 1 2 3 26 26 H 1.08993 * 109.47636 * 149.99368 * 1 2 3 27 27 H 0.96697 * 113.99783 * 179.97438 * 4 3 2 28 28 H 1.08002 * 120.04806 * 359.94420 * 6 5 2 29 29 H 1.08001 * 119.95909 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46742 * 180.02562 * 12 10 9 31 31 H 1.09000 * 109.47645 * 299.99659 * 12 10 9 32 32 H 1.08998 * 109.47467 * 60.00874 * 12 10 9 33 33 H 1.09008 * 109.46800 * 174.99517 * 13 10 9 34 34 H 1.08998 * 109.47250 * 54.99650 * 13 10 9 35 35 H 0.97008 * 119.99773 * 0.27155 * 17 16 14 36 36 H 1.08007 * 119.95228 * 179.74630 * 22 8 7 37 37 H 1.07996 * 120.04792 * 180.25278 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1540 1.1205 0.0000 4 8 1.4461 2.3469 0.0005 5 6 2.2446 -1.2777 -0.0006 6 6 3.6415 -1.2800 0.0000 7 6 4.3265 -2.4754 0.0000 8 6 3.6299 -3.6774 0.0000 9 8 4.3089 -4.8536 -0.0006 10 6 3.5353 -6.0491 -0.1195 11 1 2.6854 -5.8682 -0.7775 12 6 3.0301 -6.4691 1.2623 13 6 4.4053 -7.1634 -0.7048 14 6 4.8019 -6.8035 -2.1134 15 1 4.4674 -5.8730 -2.5475 16 6 5.5929 -7.6618 -2.8475 17 7 6.0056 -8.7920 -2.3165 18 14 6.0851 -7.2154 -4.5932 19 1 6.9353 -8.2935 -5.1588 20 1 4.8659 -7.0580 -5.4264 21 1 6.8453 -5.9398 -4.5824 22 6 2.2408 -3.6796 -0.0054 23 6 1.5480 -2.4885 -0.0002 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8901 -0.5137 26 1 -0.3634 -0.8898 -0.5139 27 1 2.0145 3.1291 0.0009 28 1 4.1839 -0.3460 -0.0001 29 1 5.4065 -2.4782 0.0000 30 1 2.4404 -7.3814 1.1716 31 1 3.8799 -6.6503 1.9204 32 1 2.4103 -5.6754 1.6793 33 1 3.8429 -8.0971 -0.7129 34 1 5.3005 -7.2838 -0.0947 35 1 5.7502 -9.0236 -1.4098 36 1 1.7030 -4.6162 -0.0096 37 1 0.4680 -2.4912 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709998838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:31 Heat of formation + Delta-G solvation = -43.309983 kcal Electronic energy + Delta-G solvation = -19075.332233 eV Core-core repulsion = 16011.373448 eV Total energy + Delta-G solvation = -3063.958784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.30226 -39.34467 -37.79444 -35.90242 -34.86170 -33.38609 -32.12482 -30.17591 -29.15095 -28.96895 -25.29345 -24.35411 -23.88751 -21.87348 -20.71553 -19.28002 -19.01226 -17.89118 -17.30731 -16.61848 -16.23043 -15.77120 -15.70306 -15.53448 -15.38839 -14.86027 -14.77618 -14.50330 -14.15844 -13.55699 -13.51905 -13.36817 -13.24914 -13.07298 -12.91295 -12.71883 -12.51400 -12.02280 -12.01076 -11.85259 -11.43641 -10.89402 -10.83676 -10.60942 -10.56399 -10.04799 -8.93767 -8.68673 -6.38004 -0.15846 0.35932 1.37108 1.51309 1.59175 1.78780 2.11809 2.33655 2.55359 2.83145 3.16575 3.49382 3.80372 3.91336 3.96363 4.11593 4.18982 4.29084 4.32050 4.45015 4.57256 4.64632 4.66496 4.74454 4.88731 4.98626 5.04556 5.06130 5.15949 5.23127 5.33807 5.37805 5.41577 5.75660 5.92696 5.94960 6.16302 6.52030 6.62751 6.83052 7.40350 8.72936 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025614 B = 0.004153 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.891418 B = 6740.645647 C = 7341.273393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.178 3.822 3 N -0.369 5.369 4 O -0.416 6.416 5 C -0.115 4.115 6 C -0.039 4.039 7 C -0.180 4.180 8 C 0.140 3.860 9 O -0.320 6.320 10 C 0.098 3.902 11 H 0.072 0.928 12 C -0.169 4.169 13 C 0.010 3.990 14 C -0.607 4.607 15 H 0.044 0.956 16 C -0.036 4.036 17 N -0.938 5.938 18 Si 1.112 2.888 19 H -0.281 1.281 20 H -0.267 1.267 21 H -0.276 1.276 22 C -0.222 4.222 23 C -0.034 4.034 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.418 0.582 28 H 0.143 0.857 29 H 0.130 0.870 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.023 0.977 34 H -0.006 1.006 35 H 0.257 0.743 36 H 0.146 0.854 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.261 16.715 6.221 21.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.010 4.010 3 N -0.112 5.112 4 O -0.328 6.328 5 C -0.116 4.116 6 C -0.058 4.058 7 C -0.199 4.199 8 C 0.092 3.908 9 O -0.233 6.233 10 C 0.043 3.957 11 H 0.089 0.911 12 C -0.226 4.226 13 C -0.027 4.027 14 C -0.645 4.645 15 H 0.062 0.938 16 C -0.233 4.233 17 N -0.575 5.575 18 Si 0.934 3.066 19 H -0.206 1.206 20 H -0.192 1.192 21 H -0.202 1.202 22 C -0.240 4.240 23 C -0.053 4.053 24 H 0.113 0.887 25 H 0.093 0.907 26 H 0.117 0.883 27 H 0.269 0.731 28 H 0.160 0.840 29 H 0.148 0.852 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.012 0.988 35 H 0.066 0.934 36 H 0.163 0.837 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.859 16.244 4.940 20.154 hybrid contribution -0.883 0.496 1.453 1.772 sum -11.742 16.740 6.394 21.424 Atomic orbital electron populations 1.21319 0.89628 1.04811 1.04638 1.23283 0.95771 0.90214 0.91686 1.76474 1.24618 0.92490 1.17650 1.88340 1.35565 1.13357 1.95509 1.18222 0.92633 0.90498 1.10277 1.21183 0.93527 0.97178 0.93948 1.20535 1.00879 0.89885 1.08566 1.19749 0.91957 0.86412 0.92662 1.86181 1.37792 1.13146 1.86170 1.22490 0.93675 0.82472 0.97073 0.91056 1.22345 1.01738 1.02959 0.95578 1.19297 0.94604 0.93284 0.95472 1.22305 1.35291 1.06905 1.00028 0.93795 1.27286 0.93825 0.93191 1.09043 1.70926 1.45444 1.24316 1.16852 0.82990 0.77155 0.75866 0.70600 1.20636 1.19158 1.20151 1.21445 0.92413 1.00575 1.09612 1.21314 1.01329 0.89249 0.93451 0.88658 0.90700 0.88336 0.73129 0.83961 0.85244 0.89822 0.92598 0.90360 0.95882 0.98775 0.93368 0.83671 0.81551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.27 71.24 0.66 -1.66 16 2 C 0.18 3.99 7.11 45.37 0.32 4.32 16 3 N -0.37 -8.88 11.23 -42.95 -0.48 -9.36 16 4 O -0.42 -8.20 13.73 -38.79 -0.53 -8.73 16 5 C -0.11 -2.81 5.87 -20.12 -0.12 -2.93 16 6 C -0.04 -1.05 9.57 22.51 0.22 -0.84 16 7 C -0.18 -5.71 9.97 22.33 0.22 -5.49 16 8 C 0.14 4.84 6.60 22.60 0.15 4.99 16 9 O -0.32 -13.49 9.55 -91.43 -0.87 -14.36 16 10 C 0.10 3.95 2.17 30.60 0.07 4.02 16 11 H 0.07 2.74 6.30 -2.39 -0.02 2.72 16 12 C -0.17 -5.24 9.16 71.98 0.66 -4.58 16 13 C 0.01 0.53 4.00 29.85 0.12 0.65 16 14 C -0.61 -34.88 8.88 25.60 0.23 -34.65 16 15 H 0.04 2.52 7.74 -2.91 -0.02 2.50 16 16 C -0.04 -2.10 5.46 84.66 0.46 -1.64 16 17 N -0.94 -58.13 13.65 21.45 0.29 -57.83 16 18 Si 1.11 51.13 29.90 68.60 2.05 53.18 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 22 C -0.22 -6.19 8.21 22.32 0.18 -6.00 16 23 C -0.03 -0.75 9.35 22.52 0.21 -0.54 16 24 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.07 1.27 7.35 -2.39 -0.02 1.25 16 26 H 0.10 1.18 6.47 -2.39 -0.02 1.16 16 27 H 0.42 4.39 9.28 -74.06 -0.69 3.70 16 28 H 0.14 3.53 7.55 -2.91 -0.02 3.51 16 29 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 30 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 2.02 6.89 -2.39 -0.02 2.00 16 33 H 0.02 1.19 8.01 -2.38 -0.02 1.17 16 34 H -0.01 -0.34 8.00 -2.39 -0.02 -0.36 16 35 H 0.26 15.95 7.22 -92.70 -0.67 15.28 16 36 H 0.15 3.71 5.40 -2.91 -0.02 3.70 16 37 H 0.17 2.39 6.35 -2.91 -0.02 2.37 16 Total: -1.00 -71.42 314.07 4.34 -67.08 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.50 Total: 14.38 kcal Atomic # 6 Polarization: -47.73 SS G_CDS: 3.38 Total: -44.35 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -0.19 Total: -67.20 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -1.41 Total: -23.10 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.05 Total: 53.18 kcal Total: -71.42 4.34 -67.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709998838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.773 kcal (2) G-P(sol) polarization free energy of solvation -71.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds