Wall clock time and date at job start Mon Mar 30 2020 07:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99735 * 2 1 4 4 H 1.48494 * 109.47004 * 239.99579 * 3 2 1 5 5 H 1.48499 * 109.47213 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46896 * 119.99643 * 3 2 1 7 7 C 1.37874 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99664 * 174.17062 * 7 2 1 9 9 C 1.50699 * 120.00329 * 354.17476 * 7 2 1 10 10 H 1.09010 * 109.46898 * 33.03853 * 9 7 2 11 11 C 1.50698 * 109.47096 * 273.04105 * 9 7 2 12 12 C 1.38226 * 119.99904 * 285.44873 * 11 9 7 13 13 C 1.38239 * 119.99966 * 179.76827 * 12 11 9 14 14 C 1.38230 * 120.00049 * 0.50264 * 13 12 11 15 15 C 1.38239 * 119.99935 * 359.74615 * 14 13 12 16 16 C 1.38238 * 119.99769 * 105.71946 * 11 9 7 17 17 N 1.46896 * 109.47187 * 153.03701 * 9 7 2 18 18 C 1.47841 * 111.00149 * 304.08199 * 17 9 7 19 19 C 1.54905 * 104.89471 * 213.57988 * 18 17 9 20 20 C 1.55430 * 101.52072 * 37.06551 * 19 18 17 21 21 H 1.09005 * 110.84086 * 82.82680 * 20 19 18 22 22 C 1.53004 * 110.69557 * 205.97420 * 20 19 18 23 23 F 1.39898 * 109.47242 * 178.62292 * 22 20 19 24 24 C 1.47440 * 110.99890 * 183.23977 * 17 9 7 25 25 H 0.97000 * 120.00013 * 5.01805 * 1 2 3 26 26 H 1.08006 * 120.00204 * 359.97438 * 12 11 9 27 27 H 1.08002 * 119.99901 * 180.23055 * 13 12 11 28 28 H 1.08000 * 120.00265 * 179.72600 * 14 13 12 29 29 H 1.07996 * 120.00111 * 179.97438 * 15 14 13 30 30 H 1.07990 * 120.00420 * 0.02562 * 16 11 9 31 31 H 1.09004 * 110.37711 * 332.46425 * 18 17 9 32 32 H 1.09004 * 110.37698 * 94.69936 * 18 17 9 33 33 H 1.08997 * 110.99588 * 155.21714 * 19 18 17 34 34 H 1.09000 * 110.99391 * 279.03551 * 19 18 17 35 35 H 1.08996 * 109.47113 * 298.62428 * 22 20 19 36 36 H 1.09006 * 109.46753 * 58.62603 * 22 20 19 37 37 H 1.09001 * 109.88811 * 242.66783 * 24 17 9 38 38 H 1.08997 * 109.88842 * 3.69110 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0803 -1.1964 -0.0945 9 6 1.2570 -2.4957 0.1336 10 1 0.2832 -2.4064 -0.3483 11 6 1.0674 -2.8192 1.5932 12 6 2.1347 -3.2740 2.3445 13 6 1.9619 -3.5662 3.6846 14 6 0.7194 -3.4134 4.2707 15 6 -0.3493 -2.9635 3.5180 16 6 -0.1753 -2.6664 2.1792 17 7 2.0251 -3.5696 -0.5103 18 6 2.3149 -3.2406 -1.9222 19 6 2.2920 -4.6019 -2.6610 20 6 1.1382 -5.3364 -1.9228 21 1 0.1699 -5.0454 -2.3301 22 6 1.3233 -6.8530 -2.0040 23 9 0.2898 -7.4870 -1.3059 24 6 1.2877 -4.8456 -0.4674 25 1 -0.4850 0.8368 -0.0735 26 1 3.1045 -3.3980 1.8855 27 1 2.7968 -3.9180 4.2726 28 1 0.5833 -3.6459 5.3166 29 1 -1.3201 -2.8445 3.9758 30 1 -1.0103 -2.3156 1.5910 31 1 1.5473 -2.5785 -2.3228 32 1 3.2979 -2.7778 -2.0100 33 1 2.0599 -4.4689 -3.7177 34 1 3.2364 -5.1311 -2.5339 35 1 1.3022 -7.1662 -3.0477 36 1 2.2814 -7.1263 -1.5618 37 1 1.8469 -5.5777 0.1153 38 1 0.3046 -4.6909 -0.0228 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711436769.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:11 Heat of formation + Delta-G solvation = -29.274909 kcal Electronic energy + Delta-G solvation = -20212.817545 eV Core-core repulsion = 17161.840156 eV Total energy + Delta-G solvation = -3050.977388 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.42176 -38.89483 -37.57903 -33.84657 -31.77194 -30.12410 -29.88632 -28.43059 -26.79723 -24.52081 -23.01112 -21.58004 -20.61966 -20.28309 -19.24843 -16.76306 -16.05379 -15.76690 -15.54393 -15.34446 -14.93143 -14.42740 -14.10996 -13.75128 -13.31955 -12.90581 -12.70548 -12.48628 -12.36382 -11.83391 -11.58645 -11.50652 -11.18619 -11.11600 -10.96370 -10.73769 -10.52865 -10.37189 -10.30593 -10.13367 -9.98799 -9.83715 -9.30310 -8.60147 -7.95433 -7.60520 -7.23950 -6.12414 -4.16920 2.38233 2.40549 3.27193 3.32105 3.35362 4.33151 4.70475 4.75571 4.79537 4.91936 5.08145 5.17655 5.22691 5.49117 5.69961 5.72704 5.81993 5.84880 5.92759 5.93127 6.05553 6.15199 6.33264 6.44316 6.51308 6.54995 6.61847 6.69834 6.78610 6.96067 7.02666 7.29957 7.40325 7.43687 7.71119 7.78053 7.83965 8.09003 8.16377 8.46936 8.94125 9.47539 10.93568 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.014678 B = 0.008266 C = 0.005960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.193041 B = 3386.355288 C = 4696.924931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.501 4.501 8 H 0.064 0.936 9 C 0.233 3.767 10 H 0.036 0.964 11 C -0.023 4.023 12 C -0.101 4.101 13 C -0.138 4.138 14 C -0.152 4.152 15 C -0.133 4.133 16 C -0.112 4.112 17 N -0.525 5.525 18 C 0.067 3.933 19 C -0.124 4.124 20 C -0.145 4.145 21 H 0.081 0.919 22 C 0.074 3.926 23 F -0.221 7.221 24 C 0.052 3.948 25 H 0.264 0.736 26 H 0.118 0.882 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 -9.190 -1.874 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.539 4.539 8 H 0.082 0.918 9 C 0.126 3.874 10 H 0.054 0.946 11 C -0.024 4.024 12 C -0.120 4.120 13 C -0.156 4.156 14 C -0.171 4.171 15 C -0.151 4.151 16 C -0.131 4.131 17 N -0.250 5.250 18 C -0.060 4.060 19 C -0.163 4.163 20 C -0.165 4.165 21 H 0.100 0.900 22 C 0.019 3.981 23 F -0.202 7.202 24 C -0.076 4.076 25 H 0.073 0.927 26 H 0.137 0.863 27 H 0.123 0.877 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.444 -9.098 -1.515 9.542 hybrid contribution -0.475 1.179 -0.228 1.292 sum 1.969 -7.919 -1.742 8.344 Atomic orbital electron populations 1.69894 1.05975 1.27324 1.49026 1.24976 0.94882 0.99349 0.94474 0.86589 0.79593 0.82707 0.78780 1.20192 1.21306 1.20041 1.20912 0.93804 0.88958 1.50222 0.91773 1.18629 0.93859 0.88330 0.86541 0.94608 1.20441 0.91605 0.91805 0.98550 1.20947 0.99273 0.98917 0.92824 1.20991 0.96581 1.02453 0.95544 1.20799 0.93751 1.03803 0.98715 1.20956 0.97993 1.01409 0.94745 1.21088 0.97874 0.99578 0.94542 1.63653 1.44508 1.02404 1.14403 1.22654 1.01586 0.94110 0.87682 1.22798 0.97330 0.97474 0.98662 1.23096 1.00483 0.93870 0.99055 0.90015 1.21995 0.88352 0.91873 0.95867 1.92752 1.62029 1.83696 1.81734 1.22752 0.97748 0.93592 0.93537 0.92651 0.86349 0.87725 0.87886 0.87720 0.86529 0.93139 0.90911 0.91416 0.91098 0.91298 0.90740 0.91808 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.35 12.88 55.43 0.71 -23.64 16 2 C 0.07 1.78 5.45 -17.82 -0.10 1.68 16 3 Si 0.90 20.93 29.55 -169.99 -5.02 15.90 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.50 -13.04 7.39 -34.44 -0.25 -13.29 16 8 H 0.06 1.69 7.82 -52.49 -0.41 1.28 16 9 C 0.23 5.55 1.26 -70.02 -0.09 5.46 16 10 H 0.04 0.97 7.26 -51.92 -0.38 0.59 16 11 C -0.02 -0.52 3.80 -104.63 -0.40 -0.92 16 12 C -0.10 -2.15 9.22 -39.59 -0.37 -2.52 16 13 C -0.14 -2.61 10.05 -39.58 -0.40 -3.00 16 14 C -0.15 -2.81 10.05 -39.58 -0.40 -3.20 16 15 C -0.13 -2.61 10.05 -39.58 -0.40 -3.01 16 16 C -0.11 -2.51 9.67 -39.58 -0.38 -2.90 16 17 N -0.53 -10.72 4.48 -226.08 -1.01 -11.74 16 18 C 0.07 1.25 5.75 -2.30 -0.01 1.24 16 19 C -0.12 -1.75 6.55 -24.44 -0.16 -1.91 16 20 C -0.15 -2.16 3.31 -88.64 -0.29 -2.45 16 21 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 22 C 0.07 0.92 6.84 37.16 0.25 1.18 16 23 F -0.22 -3.34 17.23 2.25 0.04 -3.30 16 24 C 0.05 0.95 5.77 -2.84 -0.02 0.93 16 25 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 26 H 0.12 2.50 7.89 -52.48 -0.41 2.08 16 27 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 28 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.12 2.73 8.00 -52.49 -0.42 2.31 16 31 H 0.05 1.04 7.74 -51.93 -0.40 0.64 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.90 8.05 -51.93 -0.42 0.49 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.06 1.13 7.79 -51.93 -0.40 0.72 16 38 H 0.05 1.02 7.17 -51.93 -0.37 0.65 16 LS Contribution 315.47 15.07 4.75 4.75 Total: -1.00 -27.70 315.47 -9.27 -36.97 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.73 Total: 3.77 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -3.01 Total: -22.72 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.30 Total: -35.38 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.04 Total: -3.30 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.70 -9.27 -36.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711436769.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.696 kcal (2) G-P(sol) polarization free energy of solvation -27.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds