Wall clock time and date at job start Mon Mar 30 2020 07:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 120.00049 * 2 1 4 4 H 1.48502 * 109.46771 * 264.51993 * 3 2 1 5 5 H 1.48499 * 109.46958 * 24.51907 * 3 2 1 6 6 H 1.48501 * 109.47050 * 144.52007 * 3 2 1 7 7 C 1.37876 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00403 * 4.62218 * 7 2 1 9 9 C 1.50702 * 119.99943 * 184.62038 * 7 2 1 10 10 H 1.09000 * 109.47141 * 4.56209 * 9 7 2 11 11 C 1.50700 * 109.46935 * 124.56084 * 9 7 2 12 12 C 1.38235 * 120.00230 * 74.52071 * 11 9 7 13 13 C 1.38236 * 120.00005 * 179.76093 * 12 11 9 14 14 C 1.38230 * 120.00227 * 0.49306 * 13 12 11 15 15 C 1.38240 * 119.99823 * 359.78460 * 14 13 12 16 16 C 1.38237 * 120.00016 * 359.95691 * 15 14 13 17 17 N 1.46894 * 109.47483 * 244.56179 * 9 7 2 18 18 C 1.47840 * 111.00189 * 180.84432 * 17 9 7 19 19 C 1.54912 * 104.79674 * 213.63658 * 18 17 9 20 20 C 1.55144 * 101.65219 * 37.06477 * 19 18 17 21 21 H 1.09004 * 110.70216 * 82.73165 * 20 19 18 22 22 C 1.52993 * 110.70763 * 205.96535 * 20 19 18 23 23 F 1.39896 * 109.47410 * 178.60478 * 22 20 19 24 24 C 1.47442 * 110.99889 * 59.99625 * 17 9 7 25 25 H 0.96998 * 119.99634 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99902 * 359.97438 * 12 11 9 27 27 H 1.08006 * 119.99806 * 180.25335 * 13 12 11 28 28 H 1.07994 * 120.00348 * 179.76394 * 14 13 12 29 29 H 1.08000 * 119.99859 * 179.97438 * 15 14 13 30 30 H 1.07992 * 119.99748 * 179.97438 * 16 15 14 31 31 H 1.08998 * 110.37569 * 332.46311 * 18 17 9 32 32 H 1.09003 * 110.37913 * 94.80763 * 18 17 9 33 33 H 1.08999 * 110.98900 * 278.97757 * 19 18 17 34 34 H 1.08997 * 111.02398 * 155.17451 * 19 18 17 35 35 H 1.09010 * 109.47248 * 298.60009 * 22 20 19 36 36 H 1.09001 * 109.47639 * 58.59956 * 22 20 19 37 37 H 1.08999 * 109.89486 * 242.66469 * 24 17 9 38 38 H 1.08996 * 109.88949 * 3.69287 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6125 1.9795 -1.3937 5 1 1.3936 2.6833 0.5810 6 1 3.4841 1.4764 0.8126 7 6 2.0046 -1.1941 0.0005 8 1 1.4672 -2.1279 -0.0744 9 6 3.5079 -1.1962 0.1057 10 1 3.8632 -0.1763 0.2533 11 6 3.9285 -2.0488 1.2749 12 6 3.8618 -3.4266 1.1850 13 6 4.2522 -4.2089 2.2558 14 6 4.6997 -3.6131 3.4201 15 6 4.7610 -2.2352 3.5121 16 6 4.3756 -1.4530 2.4394 17 7 4.0845 -1.7414 -1.1305 18 6 5.5606 -1.7777 -1.0556 19 6 6.0370 -1.5072 -2.5046 20 6 4.9931 -0.4664 -2.9884 21 1 5.2673 0.5360 -2.6593 22 6 4.8451 -0.5160 -4.5104 23 9 3.8765 0.4087 -4.9152 24 6 3.6934 -0.9309 -2.2983 25 1 -0.4849 0.8401 -0.0004 26 1 3.5079 -3.8920 0.2769 27 1 4.2040 -5.2855 2.1841 28 1 5.0011 -4.2242 4.2580 29 1 5.1102 -1.7697 4.4220 30 1 4.4230 -0.3766 2.5115 31 1 5.9257 -1.0001 -0.3847 32 1 5.8997 -2.7583 -0.7215 33 1 5.9913 -2.4148 -3.1064 34 1 7.0420 -1.0854 -2.5134 35 1 5.7993 -0.2702 -4.9765 36 1 4.5402 -1.5177 -4.8134 37 1 3.1029 -1.5344 -2.9877 38 1 3.1143 -0.0668 -1.9728 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711436773.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:14 Heat of formation + Delta-G solvation = -23.662498 kcal Electronic energy + Delta-G solvation = -20318.441338 eV Core-core repulsion = 17267.707321 eV Total energy + Delta-G solvation = -3050.734016 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.35106 -39.14199 -37.77820 -33.91709 -32.01990 -30.27339 -30.01280 -29.03578 -26.62935 -25.04113 -22.66740 -21.86569 -21.03492 -20.13586 -19.26068 -17.08782 -16.51810 -15.90161 -15.56285 -15.33184 -14.92028 -14.70576 -14.27305 -13.79258 -13.40934 -12.95648 -12.82077 -12.68954 -12.47162 -12.26536 -12.06069 -11.88340 -11.26510 -11.25365 -11.01105 -10.72404 -10.57160 -10.39803 -10.34933 -10.14798 -9.97383 -9.78261 -9.49865 -8.69764 -8.22832 -7.86595 -7.31840 -6.21624 -4.20660 2.08906 2.13785 3.16187 3.21487 3.26193 4.25401 4.46687 4.70487 4.77493 4.80893 4.95413 5.13498 5.26563 5.40447 5.51667 5.56007 5.60928 5.71347 5.75630 5.85587 5.99747 6.02513 6.09170 6.24441 6.25065 6.29505 6.38349 6.52182 6.68068 6.69208 6.80934 6.83302 7.12382 7.17165 7.36575 7.48950 7.75118 7.98042 8.02981 8.50789 8.90555 9.39481 10.90794 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.016002 B = 0.008691 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.352034 B = 3220.982711 C = 4339.791329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.078 3.922 3 Si 0.861 3.139 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.489 4.489 8 H 0.083 0.917 9 C 0.199 3.801 10 H 0.022 0.978 11 C -0.028 4.028 12 C -0.095 4.095 13 C -0.129 4.129 14 C -0.147 4.147 15 C -0.125 4.125 16 C -0.132 4.132 17 N -0.518 5.518 18 C 0.038 3.962 19 C -0.119 4.119 20 C -0.153 4.153 21 H 0.078 0.922 22 C 0.076 3.924 23 F -0.218 7.218 24 C 0.064 3.936 25 H 0.267 0.733 26 H 0.125 0.875 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.414 -2.980 -2.192 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.126 4.126 3 Si 0.689 3.311 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.527 4.527 8 H 0.101 0.899 9 C 0.094 3.906 10 H 0.040 0.960 11 C -0.029 4.029 12 C -0.113 4.113 13 C -0.147 4.147 14 C -0.166 4.166 15 C -0.143 4.143 16 C -0.151 4.151 17 N -0.243 5.243 18 C -0.090 4.090 19 C -0.157 4.157 20 C -0.173 4.173 21 H 0.096 0.904 22 C 0.021 3.979 23 F -0.200 7.200 24 C -0.064 4.064 25 H 0.077 0.923 26 H 0.143 0.857 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.995 -3.337 -2.245 12.651 hybrid contribution 0.546 1.887 0.240 1.979 sum 12.540 -1.449 -2.005 12.782 Atomic orbital electron populations 1.69866 1.06090 1.27173 1.49015 1.25088 0.94756 0.98523 0.94223 0.87180 0.80333 0.84474 0.79118 1.19393 1.21145 1.19009 1.20781 0.87455 0.94932 1.49556 0.89912 1.19147 0.95986 0.91167 0.84342 0.96011 1.20225 0.92480 0.94424 0.95728 1.20995 0.98536 0.93441 0.98362 1.21075 1.00620 0.99061 0.93974 1.20869 1.03206 0.94668 0.97810 1.20918 1.01448 0.93944 0.98035 1.20989 1.00936 0.99273 0.93864 1.64020 1.04890 1.51367 1.04049 1.23007 0.90686 1.00512 0.94763 1.22663 0.97256 0.98327 0.97425 1.23148 0.98923 1.00399 0.94801 0.90380 1.21947 0.89681 0.91639 0.94621 1.92769 1.66320 1.69054 1.91817 1.22587 0.94029 0.97332 0.92426 0.92286 0.85701 0.87194 0.87411 0.87300 0.87321 0.94673 0.90933 0.90659 0.91549 0.91401 0.90521 0.91032 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.28 13.96 55.43 0.77 -25.51 16 2 C 0.08 2.18 5.28 -17.82 -0.09 2.08 16 3 Si 0.86 20.94 25.41 -169.99 -4.32 16.63 16 4 H -0.27 -6.41 6.87 56.52 0.39 -6.02 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.17 6.22 56.52 0.35 -5.82 16 7 C -0.49 -13.23 8.02 -34.44 -0.28 -13.51 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.20 4.57 1.36 -70.02 -0.10 4.48 16 10 H 0.02 0.53 4.25 -51.93 -0.22 0.31 16 11 C -0.03 -0.58 4.00 -104.62 -0.42 -1.00 16 12 C -0.10 -1.86 8.99 -39.58 -0.36 -2.22 16 13 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 14 C -0.15 -2.37 10.05 -39.58 -0.40 -2.77 16 15 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 16 C -0.13 -2.61 9.67 -39.58 -0.38 -2.99 16 17 N -0.52 -10.52 4.50 -226.08 -1.02 -11.54 16 18 C 0.04 0.64 5.70 -2.30 -0.01 0.63 16 19 C -0.12 -1.61 6.52 -24.59 -0.16 -1.77 16 20 C -0.15 -2.39 3.30 -88.80 -0.29 -2.69 16 21 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 22 C 0.08 1.02 6.84 37.15 0.25 1.28 16 23 F -0.22 -3.68 17.23 2.25 0.04 -3.65 16 24 C 0.06 1.28 5.78 -2.84 -0.02 1.27 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.13 2.49 7.89 -52.49 -0.41 2.07 16 27 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 28 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.11 2.12 8.00 -52.49 -0.42 1.70 16 31 H 0.03 0.61 7.77 -51.93 -0.40 0.21 16 32 H 0.07 1.17 8.03 -51.93 -0.42 0.75 16 33 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 37 H 0.07 1.44 7.79 -51.93 -0.40 1.04 16 38 H 0.07 1.52 4.36 -51.93 -0.23 1.29 16 LS Contribution 306.10 15.07 4.61 4.61 Total: -1.00 -29.39 306.10 -8.46 -37.85 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.50 Total: 3.94 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -3.05 Total: -22.34 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.24 Total: -37.05 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.04 Total: -3.65 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.32 Total: 16.63 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.39 -8.46 -37.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711436773.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.187 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds