Wall clock time and date at job start Mon Mar 30 2020 07:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 120.00049 * 2 1 4 4 H 1.48502 * 109.46771 * 264.51993 * 3 2 1 5 5 H 1.48499 * 109.46958 * 24.51907 * 3 2 1 6 6 H 1.48501 * 109.47050 * 144.52007 * 3 2 1 7 7 C 1.37876 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00403 * 4.62218 * 7 2 1 9 9 C 1.50702 * 119.99943 * 184.62038 * 7 2 1 10 10 H 1.09000 * 109.47141 * 4.56209 * 9 7 2 11 11 C 1.50700 * 109.46935 * 124.56084 * 9 7 2 12 12 C 1.38235 * 120.00230 * 74.52071 * 11 9 7 13 13 C 1.38236 * 120.00005 * 179.76093 * 12 11 9 14 14 C 1.38230 * 120.00227 * 0.49306 * 13 12 11 15 15 C 1.38240 * 119.99823 * 359.78460 * 14 13 12 16 16 C 1.38237 * 120.00016 * 359.95691 * 15 14 13 17 17 N 1.46894 * 109.47483 * 244.56179 * 9 7 2 18 18 C 1.47840 * 111.00189 * 180.84432 * 17 9 7 19 19 C 1.54912 * 104.79674 * 213.63658 * 18 17 9 20 20 C 1.55144 * 101.65219 * 37.06477 * 19 18 17 21 21 H 1.09004 * 110.70216 * 82.73165 * 20 19 18 22 22 C 1.52993 * 110.70763 * 205.96535 * 20 19 18 23 23 F 1.39896 * 109.47410 * 178.60478 * 22 20 19 24 24 C 1.47442 * 110.99889 * 59.99625 * 17 9 7 25 25 H 0.96998 * 119.99634 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.99902 * 359.97438 * 12 11 9 27 27 H 1.08006 * 119.99806 * 180.25335 * 13 12 11 28 28 H 1.07994 * 120.00348 * 179.76394 * 14 13 12 29 29 H 1.08000 * 119.99859 * 179.97438 * 15 14 13 30 30 H 1.07992 * 119.99748 * 179.97438 * 16 15 14 31 31 H 1.08998 * 110.37569 * 332.46311 * 18 17 9 32 32 H 1.09003 * 110.37913 * 94.80763 * 18 17 9 33 33 H 1.08999 * 110.98900 * 278.97757 * 19 18 17 34 34 H 1.08997 * 111.02398 * 155.17451 * 19 18 17 35 35 H 1.09010 * 109.47248 * 298.60009 * 22 20 19 36 36 H 1.09001 * 109.47639 * 58.59956 * 22 20 19 37 37 H 1.08999 * 109.89486 * 242.66469 * 24 17 9 38 38 H 1.08996 * 109.88949 * 3.69287 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6125 1.9795 -1.3937 5 1 1.3936 2.6833 0.5810 6 1 3.4841 1.4764 0.8126 7 6 2.0046 -1.1941 0.0005 8 1 1.4672 -2.1279 -0.0744 9 6 3.5079 -1.1962 0.1057 10 1 3.8632 -0.1763 0.2533 11 6 3.9285 -2.0488 1.2749 12 6 3.8618 -3.4266 1.1850 13 6 4.2522 -4.2089 2.2558 14 6 4.6997 -3.6131 3.4201 15 6 4.7610 -2.2352 3.5121 16 6 4.3756 -1.4530 2.4394 17 7 4.0845 -1.7414 -1.1305 18 6 5.5606 -1.7777 -1.0556 19 6 6.0370 -1.5072 -2.5046 20 6 4.9931 -0.4664 -2.9884 21 1 5.2673 0.5360 -2.6593 22 6 4.8451 -0.5160 -4.5104 23 9 3.8765 0.4087 -4.9152 24 6 3.6934 -0.9309 -2.2983 25 1 -0.4849 0.8401 -0.0004 26 1 3.5079 -3.8920 0.2769 27 1 4.2040 -5.2855 2.1841 28 1 5.0011 -4.2242 4.2580 29 1 5.1102 -1.7697 4.4220 30 1 4.4230 -0.3766 2.5115 31 1 5.9257 -1.0001 -0.3847 32 1 5.8997 -2.7583 -0.7215 33 1 5.9913 -2.4148 -3.1064 34 1 7.0420 -1.0854 -2.5134 35 1 5.7993 -0.2702 -4.9765 36 1 4.5402 -1.5177 -4.8134 37 1 3.1029 -1.5344 -2.9877 38 1 3.1143 -0.0668 -1.9728 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711436773.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:13 Heat of formation + Delta-G solvation = -41.650567 kcal Electronic energy + Delta-G solvation = -20319.221359 eV Core-core repulsion = 17267.707321 eV Total energy + Delta-G solvation = -3051.514037 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.55573 -40.64690 -39.17349 -35.61332 -33.90914 -31.68734 -31.40303 -30.46697 -28.38216 -26.44121 -24.29424 -23.29251 -22.42928 -21.43210 -20.87546 -19.14717 -17.90067 -17.19350 -16.97051 -16.53758 -16.49594 -16.16441 -15.86438 -15.20098 -14.91878 -14.69617 -14.52452 -14.07297 -14.03374 -13.71549 -13.68590 -13.30812 -12.94983 -12.64215 -12.35402 -12.22066 -12.02282 -11.82979 -11.80461 -11.59519 -11.53879 -11.52766 -11.28831 -10.80913 -9.64888 -9.36518 -8.94998 -8.38513 -6.40367 0.65281 0.70670 1.19020 1.21058 1.27808 2.19531 2.84423 3.15730 3.38895 3.51093 3.63176 3.77922 4.13475 4.16992 4.24399 4.27862 4.35186 4.42549 4.44498 4.51285 4.60493 4.67312 4.76529 4.85789 4.88173 4.94006 5.02465 5.15313 5.17627 5.24831 5.33959 5.35614 5.45332 5.72682 5.76653 5.97871 6.10806 6.27945 6.37178 6.61384 6.70774 7.23919 8.78367 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.016002 B = 0.008691 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.352034 B = 3220.982711 C = 4339.791329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.026 3.974 3 Si 0.919 3.081 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.484 4.484 8 H 0.035 0.965 9 C 0.210 3.790 10 H 0.010 0.990 11 C -0.057 4.057 12 C -0.111 4.111 13 C -0.125 4.125 14 C -0.136 4.136 15 C -0.121 4.121 16 C -0.152 4.152 17 N -0.528 5.528 18 C 0.037 3.963 19 C -0.101 4.101 20 C -0.148 4.148 21 H 0.072 0.928 22 C 0.073 3.927 23 F -0.241 7.241 24 C 0.057 3.943 25 H 0.267 0.733 26 H 0.109 0.891 27 H 0.140 0.860 28 H 0.149 0.851 29 H 0.142 0.858 30 H 0.103 0.897 31 H 0.028 0.972 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.970 -3.745 -1.577 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.173 4.173 3 Si 0.744 3.256 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.103 3.897 10 H 0.027 0.973 11 C -0.058 4.058 12 C -0.129 4.129 13 C -0.143 4.143 14 C -0.154 4.154 15 C -0.139 4.139 16 C -0.170 4.170 17 N -0.252 5.252 18 C -0.091 4.091 19 C -0.139 4.139 20 C -0.168 4.168 21 H 0.091 0.909 22 C 0.018 3.982 23 F -0.223 7.223 24 C -0.071 4.071 25 H 0.076 0.924 26 H 0.127 0.873 27 H 0.158 0.842 28 H 0.167 0.833 29 H 0.159 0.841 30 H 0.121 0.879 31 H 0.046 0.954 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 15.582 -4.116 -1.634 16.199 hybrid contribution -0.531 1.941 0.109 2.015 sum 15.051 -2.175 -1.525 15.284 Atomic orbital electron populations 1.70010 1.07817 1.27944 1.51919 1.25781 0.95342 1.01927 0.94251 0.86240 0.79610 0.80291 0.79435 1.18988 1.20989 1.17324 1.20882 0.90029 0.92893 1.48444 0.94632 1.18874 0.93154 0.91309 0.86354 0.97296 1.20142 0.94994 0.95035 0.95645 1.20968 0.99693 0.93142 0.99145 1.21414 0.99175 1.00467 0.93261 1.21352 1.01034 0.94681 0.98367 1.21295 1.00039 0.94453 0.98116 1.21119 1.02011 0.99501 0.94411 1.63781 1.07546 1.51021 1.02895 1.23080 0.88035 1.00742 0.97226 1.22647 0.97957 0.98555 0.94759 1.23100 0.96817 1.00623 0.96213 0.90912 1.22200 0.90992 0.91997 0.92975 1.92726 1.67611 1.70031 1.91908 1.22585 0.96207 0.95666 0.92621 0.92374 0.87275 0.84182 0.83325 0.84055 0.87866 0.95380 0.90145 0.88735 0.88120 0.87218 0.89112 0.92269 0.95324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.98 13.96 21.45 0.30 -58.68 16 2 C 0.03 1.52 5.28 84.65 0.45 1.97 16 3 Si 0.92 45.06 25.41 68.60 1.74 46.81 16 4 H -0.26 -12.67 6.87 99.48 0.68 -11.99 16 5 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.25 -11.41 6.22 99.48 0.62 -10.80 16 7 C -0.48 -27.84 8.02 25.60 0.21 -27.63 16 8 H 0.04 2.32 8.06 -2.91 -0.02 2.29 16 9 C 0.21 9.95 1.36 43.42 0.06 10.00 16 10 H 0.01 0.47 4.25 -2.39 -0.01 0.46 16 11 C -0.06 -2.45 4.00 -19.87 -0.08 -2.53 16 12 C -0.11 -4.34 8.99 22.27 0.20 -4.14 16 13 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 14 C -0.14 -3.84 10.05 22.27 0.22 -3.62 16 15 C -0.12 -3.75 10.05 22.27 0.22 -3.53 16 16 C -0.15 -5.87 9.67 22.27 0.22 -5.66 16 17 N -0.53 -21.82 4.50 -869.19 -3.91 -25.74 16 18 C 0.04 1.18 5.70 86.78 0.49 1.67 16 19 C -0.10 -2.41 6.52 31.98 0.21 -2.20 16 20 C -0.15 -4.37 3.30 -9.61 -0.03 -4.40 16 21 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 22 C 0.07 1.78 6.84 71.98 0.49 2.27 16 23 F -0.24 -7.94 17.23 44.97 0.77 -7.16 16 24 C 0.06 2.34 5.78 86.65 0.50 2.84 16 25 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 26 H 0.11 4.50 7.89 -2.91 -0.02 4.48 16 27 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 28 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.10 3.99 8.00 -2.91 -0.02 3.97 16 31 H 0.03 0.94 7.77 -2.39 -0.02 0.92 16 32 H 0.08 2.45 8.03 -2.39 -0.02 2.43 16 33 H 0.09 1.93 8.05 -2.39 -0.02 1.91 16 34 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.09 1.95 8.09 -2.39 -0.02 1.94 16 37 H 0.06 2.49 7.79 -2.39 -0.02 2.47 16 38 H 0.03 1.37 4.36 -2.39 -0.01 1.36 16 Total: -1.00 -69.48 306.10 3.21 -66.27 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.93 Total: 17.15 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 3.38 Total: -38.65 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -3.61 Total: -84.42 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 0.77 Total: -7.16 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.74 Total: 46.81 kcal Total: -69.48 3.21 -66.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711436773.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.619 kcal (2) G-P(sol) polarization free energy of solvation -69.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds