Wall clock time and date at job start Mon Mar 30 2020 07:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00193 * 2 1 4 4 H 1.48500 * 109.47695 * 89.99545 * 3 2 1 5 5 H 1.48501 * 109.47420 * 209.99719 * 3 2 1 6 6 H 1.48501 * 109.46889 * 329.99587 * 3 2 1 7 7 C 1.37881 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99777 * 170.26213 * 7 2 1 9 9 C 1.50700 * 120.00116 * 350.25824 * 7 2 1 10 10 H 1.09000 * 109.46882 * 174.73550 * 9 7 2 11 11 C 1.50699 * 109.46960 * 294.73350 * 9 7 2 12 12 C 1.38246 * 119.99712 * 269.33768 * 11 9 7 13 13 C 1.38233 * 119.99393 * 179.75041 * 12 11 9 14 14 C 1.38231 * 120.00393 * 0.52369 * 13 12 11 15 15 C 1.38239 * 119.99973 * 359.74955 * 14 13 12 16 16 C 1.38231 * 120.00225 * 89.61177 * 11 9 7 17 17 N 1.46898 * 109.46945 * 54.73418 * 9 7 2 18 18 C 1.47903 * 110.99906 * 173.99999 * 17 9 7 19 19 C 1.53988 * 107.05641 * 214.15378 * 18 17 9 20 20 C 1.54593 * 105.14158 * 1.22455 * 19 18 17 21 21 H 1.09002 * 110.72588 * 263.42382 * 20 19 18 22 22 C 1.53000 * 110.72428 * 140.31640 * 20 19 18 23 23 F 1.39904 * 109.47243 * 181.45624 * 22 20 19 24 24 C 1.48532 * 110.99962 * 56.60202 * 17 9 7 25 25 H 0.97000 * 120.00103 * 0.02562 * 1 2 3 26 26 H 1.07991 * 119.99817 * 359.97438 * 12 11 9 27 27 H 1.08006 * 119.99435 * 180.29756 * 13 12 11 28 28 H 1.08000 * 120.00135 * 179.77252 * 14 13 12 29 29 H 1.08000 * 120.00178 * 179.97438 * 15 14 13 30 30 H 1.08000 * 119.99681 * 0.02562 * 16 11 9 31 31 H 1.08997 * 109.91478 * 333.50725 * 18 17 9 32 32 H 1.09006 * 109.91525 * 94.80051 * 18 17 9 33 33 H 1.09000 * 110.30994 * 120.14052 * 19 18 17 34 34 H 1.09002 * 110.30923 * 242.21318 * 19 18 17 35 35 H 1.08997 * 109.47045 * 301.45301 * 22 20 19 36 36 H 1.09002 * 109.47179 * 61.45311 * 22 20 19 37 37 H 1.09005 * 110.66629 * 278.15327 * 24 17 9 38 38 H 1.08994 * 110.67157 * 41.28730 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5468 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0729 -1.2009 -0.1577 9 6 1.2673 -2.4897 0.2219 10 1 1.9556 -3.3254 0.0960 11 6 0.6996 -2.5124 1.6177 12 6 1.4421 -3.0404 2.6574 13 6 0.9234 -3.0564 3.9386 14 6 -0.3421 -2.5545 4.1783 15 6 -1.0868 -2.0317 3.1377 16 6 -0.5659 -2.0104 1.8574 17 7 0.1745 -2.6040 -0.7531 18 6 -0.4820 -3.9261 -0.6608 19 6 -0.9161 -4.3154 -2.0860 20 6 -0.4380 -3.1525 -2.9855 21 1 -1.2474 -2.4444 -3.1631 22 6 0.1139 -3.6840 -4.3098 23 9 0.5687 -2.6143 -5.0884 24 6 0.6886 -2.5034 -2.1430 25 1 -0.4850 0.8400 -0.0004 26 1 2.4288 -3.4369 2.4692 27 1 1.5055 -3.4646 4.7517 28 1 -0.7488 -2.5704 5.1787 29 1 -2.0757 -1.6399 3.3249 30 1 -1.1479 -1.6024 1.0443 31 1 0.2206 -4.6633 -0.2722 32 1 -1.3550 -3.8626 -0.0110 33 1 -0.4370 -5.2474 -2.3861 34 1 -2.0004 -4.4144 -2.1375 35 1 0.9406 -4.3661 -4.1112 36 1 -0.6738 -4.2140 -4.8452 37 1 0.8288 -1.4603 -2.4267 38 1 1.6191 -3.0608 -2.2504 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711436776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:16 Heat of formation + Delta-G solvation = -16.167627 kcal Electronic energy + Delta-G solvation = -20478.294027 eV Core-core repulsion = 17427.885012 eV Total energy + Delta-G solvation = -3050.409014 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.24647 -38.74665 -37.41144 -33.84455 -31.52236 -29.98806 -29.52778 -28.61477 -26.30922 -24.84323 -22.60339 -21.42180 -20.69863 -19.79264 -19.35062 -16.45602 -16.01027 -15.78997 -15.33556 -15.03543 -14.80274 -14.35958 -13.97133 -13.67832 -13.13970 -13.04424 -12.62275 -12.36206 -12.02022 -11.67832 -11.51237 -11.42148 -11.00719 -10.95648 -10.80253 -10.60516 -10.54745 -10.29732 -10.03116 -10.00663 -9.85337 -9.63313 -9.17322 -8.45378 -7.83578 -7.43700 -6.93222 -5.91537 -4.09505 2.45686 2.56379 3.31615 3.38605 3.41312 4.42833 4.78288 4.95678 5.00738 5.11792 5.24514 5.28074 5.50795 5.54627 5.72987 5.79085 5.91488 5.96258 6.05429 6.09200 6.27544 6.31095 6.36850 6.48581 6.59972 6.65297 6.78867 6.83494 6.94672 7.06250 7.19239 7.25304 7.47246 7.64925 7.76232 7.93295 8.06775 8.24731 8.44345 8.50907 8.99136 9.57262 11.03103 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.015930 B = 0.008642 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.286987 B = 3239.258082 C = 4453.435713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.089 3.911 3 Si 0.878 3.122 4 H -0.281 1.281 5 H -0.275 1.275 6 H -0.286 1.286 7 C -0.534 4.534 8 H 0.057 0.943 9 C 0.240 3.760 10 H -0.001 1.001 11 C -0.028 4.028 12 C -0.136 4.136 13 C -0.141 4.141 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.068 4.068 17 N -0.463 5.463 18 C 0.028 3.972 19 C -0.119 4.119 20 C -0.131 4.131 21 H 0.088 0.912 22 C 0.073 3.927 23 F -0.219 7.219 24 C 0.079 3.921 25 H 0.256 0.744 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.157 0.843 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.614 -7.488 -1.866 8.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.119 4.119 3 Si 0.705 3.295 4 H -0.207 1.207 5 H -0.200 1.200 6 H -0.212 1.212 7 C -0.571 4.571 8 H 0.076 0.924 9 C 0.134 3.866 10 H 0.017 0.983 11 C -0.029 4.029 12 C -0.154 4.154 13 C -0.160 4.160 14 C -0.171 4.171 15 C -0.165 4.165 16 C -0.086 4.086 17 N -0.187 5.187 18 C -0.100 4.100 19 C -0.157 4.157 20 C -0.150 4.150 21 H 0.107 0.893 22 C 0.018 3.982 23 F -0.200 7.200 24 C -0.049 4.049 25 H 0.066 0.934 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.174 0.826 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.142 -6.919 -1.764 7.801 hybrid contribution 1.161 0.448 0.117 1.250 sum -1.981 -6.471 -1.646 6.965 Atomic orbital electron populations 1.70087 1.05416 1.25507 1.44571 1.24872 0.94649 0.98377 0.94035 0.86840 0.80277 0.84250 0.78118 1.20719 1.20009 1.21209 1.20787 0.93611 0.90049 1.52698 0.92448 1.18401 0.87083 0.95351 0.85781 0.98314 1.20285 0.93023 0.93055 0.96533 1.20885 0.99348 1.02152 0.93033 1.20764 0.96121 1.02792 0.96289 1.20795 0.95600 1.02763 0.97938 1.21167 0.99360 1.01769 0.94214 1.21642 0.95914 0.94599 0.96455 1.65002 1.28260 1.23510 1.01940 1.22917 0.99299 0.92815 0.95017 1.22323 1.00588 0.96843 0.95928 1.22775 1.00493 0.98372 0.93410 0.89320 1.22027 0.99011 0.86402 0.90773 1.92754 1.90998 1.59553 1.76736 1.22728 0.92547 1.00843 0.88778 0.93364 0.87867 0.88067 0.88263 0.88022 0.82567 0.95681 0.91585 0.92471 0.91740 0.91362 0.91557 0.89705 0.95836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.46 9.41 55.43 0.52 -20.94 16 2 C 0.09 2.32 5.11 -17.82 -0.09 2.23 16 3 Si 0.88 20.75 29.55 -169.99 -5.02 15.72 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.53 -13.91 7.66 -34.44 -0.26 -14.18 16 8 H 0.06 1.52 7.83 -52.48 -0.41 1.11 16 9 C 0.24 5.71 1.66 -70.02 -0.12 5.59 16 10 H 0.00 -0.02 7.87 -51.93 -0.41 -0.43 16 11 C -0.03 -0.64 4.23 -104.62 -0.44 -1.08 16 12 C -0.14 -2.87 9.70 -39.58 -0.38 -3.26 16 13 C -0.14 -2.71 10.05 -39.59 -0.40 -3.11 16 14 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 15 C -0.15 -2.98 10.05 -39.58 -0.40 -3.38 16 16 C -0.07 -1.54 7.31 -39.59 -0.29 -1.83 16 17 N -0.46 -10.12 2.87 -225.28 -0.65 -10.77 16 18 C 0.03 0.52 5.79 -2.76 -0.02 0.51 16 19 C -0.12 -1.79 6.51 -25.38 -0.17 -1.95 16 20 C -0.13 -2.16 3.42 -88.76 -0.30 -2.46 16 21 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 22 C 0.07 1.02 6.84 37.16 0.25 1.27 16 23 F -0.22 -3.68 17.24 2.25 0.04 -3.64 16 24 C 0.08 1.63 5.02 -1.90 -0.01 1.62 16 25 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 26 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 27 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 28 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.16 3.83 5.85 -52.49 -0.31 3.52 16 31 H 0.02 0.47 7.64 -51.93 -0.40 0.07 16 32 H 0.07 1.25 7.68 -51.93 -0.40 0.85 16 33 H 0.06 0.75 7.85 -51.93 -0.41 0.34 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 2.00 7.85 -51.93 -0.41 1.59 16 38 H 0.02 0.48 7.91 -51.93 -0.41 0.07 16 LS Contribution 307.34 15.07 4.63 4.63 Total: -1.00 -26.85 307.34 -9.16 -36.01 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.66 Total: 2.29 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -3.02 Total: -23.31 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: -0.13 Total: -31.71 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.04 Total: -3.64 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.85 -9.16 -36.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711436776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.844 kcal (2) G-P(sol) polarization free energy of solvation -26.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds