Wall clock time and date at job start Mon Mar 30 2020 07:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00193 * 2 1 4 4 H 1.48500 * 109.47695 * 89.99545 * 3 2 1 5 5 H 1.48501 * 109.47420 * 209.99719 * 3 2 1 6 6 H 1.48501 * 109.46889 * 329.99587 * 3 2 1 7 7 C 1.37881 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99777 * 170.26213 * 7 2 1 9 9 C 1.50700 * 120.00116 * 350.25824 * 7 2 1 10 10 H 1.09000 * 109.46882 * 174.73550 * 9 7 2 11 11 C 1.50699 * 109.46960 * 294.73350 * 9 7 2 12 12 C 1.38246 * 119.99712 * 269.33768 * 11 9 7 13 13 C 1.38233 * 119.99393 * 179.75041 * 12 11 9 14 14 C 1.38231 * 120.00393 * 0.52369 * 13 12 11 15 15 C 1.38239 * 119.99973 * 359.74955 * 14 13 12 16 16 C 1.38231 * 120.00225 * 89.61177 * 11 9 7 17 17 N 1.46898 * 109.46945 * 54.73418 * 9 7 2 18 18 C 1.47903 * 110.99906 * 173.99999 * 17 9 7 19 19 C 1.53988 * 107.05641 * 214.15378 * 18 17 9 20 20 C 1.54593 * 105.14158 * 1.22455 * 19 18 17 21 21 H 1.09002 * 110.72588 * 263.42382 * 20 19 18 22 22 C 1.53000 * 110.72428 * 140.31640 * 20 19 18 23 23 F 1.39904 * 109.47243 * 181.45624 * 22 20 19 24 24 C 1.48532 * 110.99962 * 56.60202 * 17 9 7 25 25 H 0.97000 * 120.00103 * 0.02562 * 1 2 3 26 26 H 1.07991 * 119.99817 * 359.97438 * 12 11 9 27 27 H 1.08006 * 119.99435 * 180.29756 * 13 12 11 28 28 H 1.08000 * 120.00135 * 179.77252 * 14 13 12 29 29 H 1.08000 * 120.00178 * 179.97438 * 15 14 13 30 30 H 1.08000 * 119.99681 * 0.02562 * 16 11 9 31 31 H 1.08997 * 109.91478 * 333.50725 * 18 17 9 32 32 H 1.09006 * 109.91525 * 94.80051 * 18 17 9 33 33 H 1.09000 * 110.30994 * 120.14052 * 19 18 17 34 34 H 1.09002 * 110.30923 * 242.21318 * 19 18 17 35 35 H 1.08997 * 109.47045 * 301.45301 * 22 20 19 36 36 H 1.09002 * 109.47179 * 61.45311 * 22 20 19 37 37 H 1.09005 * 110.66629 * 278.15327 * 24 17 9 38 38 H 1.08994 * 110.67157 * 41.28730 * 24 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 1.4000 5 1 3.5468 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0729 -1.2009 -0.1577 9 6 1.2673 -2.4897 0.2219 10 1 1.9556 -3.3254 0.0960 11 6 0.6996 -2.5124 1.6177 12 6 1.4421 -3.0404 2.6574 13 6 0.9234 -3.0564 3.9386 14 6 -0.3421 -2.5545 4.1783 15 6 -1.0868 -2.0317 3.1377 16 6 -0.5659 -2.0104 1.8574 17 7 0.1745 -2.6040 -0.7531 18 6 -0.4820 -3.9261 -0.6608 19 6 -0.9161 -4.3154 -2.0860 20 6 -0.4380 -3.1525 -2.9855 21 1 -1.2474 -2.4444 -3.1631 22 6 0.1139 -3.6840 -4.3098 23 9 0.5687 -2.6143 -5.0884 24 6 0.6886 -2.5034 -2.1430 25 1 -0.4850 0.8400 -0.0004 26 1 2.4288 -3.4369 2.4692 27 1 1.5055 -3.4646 4.7517 28 1 -0.7488 -2.5704 5.1787 29 1 -2.0757 -1.6399 3.3249 30 1 -1.1479 -1.6024 1.0443 31 1 0.2206 -4.6633 -0.2722 32 1 -1.3550 -3.8626 -0.0110 33 1 -0.4370 -5.2474 -2.3861 34 1 -2.0004 -4.4144 -2.1375 35 1 0.9406 -4.3661 -4.1112 36 1 -0.6738 -4.2140 -4.8452 37 1 0.8288 -1.4603 -2.4267 38 1 1.6191 -3.0608 -2.2504 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711436776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:16 Heat of formation + Delta-G solvation = -28.624387 kcal Electronic energy + Delta-G solvation = -20478.834192 eV Core-core repulsion = 17427.885012 eV Total energy + Delta-G solvation = -3050.949180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.47886 -40.36665 -38.94435 -35.55710 -33.31359 -31.56032 -31.08997 -30.12031 -28.08510 -26.31078 -24.28932 -23.01798 -22.25183 -21.35220 -20.85431 -18.31163 -17.46236 -17.27997 -16.74682 -16.49859 -16.38272 -15.91261 -15.56206 -15.19064 -14.87004 -14.57570 -14.18556 -13.95977 -13.65822 -13.34679 -13.15282 -13.01253 -12.83615 -12.54804 -12.40965 -12.10528 -12.01560 -11.92799 -11.66605 -11.44584 -11.33853 -11.29392 -10.93496 -10.44592 -9.45255 -9.11438 -8.63255 -7.89137 -6.12770 0.83008 0.96241 1.38742 1.42579 1.47842 2.45591 3.17454 3.35237 3.50189 3.71315 3.86961 4.01753 4.17474 4.31619 4.35667 4.37282 4.42688 4.52207 4.60039 4.67849 4.80316 4.89526 4.93156 4.98976 5.03544 5.08939 5.21626 5.29067 5.42672 5.44835 5.51500 5.62806 5.74087 5.86938 5.98097 6.16855 6.33627 6.54366 6.60394 6.76684 7.11020 7.54829 9.01777 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.015930 B = 0.008642 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.286987 B = 3239.258082 C = 4453.435713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.059 3.941 3 Si 0.923 3.077 4 H -0.283 1.283 5 H -0.277 1.277 6 H -0.283 1.283 7 C -0.553 4.553 8 H 0.039 0.961 9 C 0.243 3.757 10 H -0.017 1.017 11 C -0.050 4.050 12 C -0.152 4.152 13 C -0.137 4.137 14 C -0.146 4.146 15 C -0.152 4.152 16 C -0.084 4.084 17 N -0.478 5.478 18 C 0.028 3.972 19 C -0.105 4.105 20 C -0.122 4.122 21 H 0.077 0.923 22 C 0.073 3.927 23 F -0.238 7.238 24 C 0.079 3.921 25 H 0.253 0.747 26 H 0.107 0.893 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.021 0.979 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.044 0.956 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.534 -8.805 -1.084 9.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.148 4.148 3 Si 0.750 3.250 4 H -0.210 1.210 5 H -0.203 1.203 6 H -0.209 1.209 7 C -0.590 4.590 8 H 0.057 0.943 9 C 0.136 3.864 10 H 0.001 0.999 11 C -0.051 4.051 12 C -0.171 4.171 13 C -0.155 4.155 14 C -0.164 4.164 15 C -0.171 4.171 16 C -0.102 4.102 17 N -0.202 5.202 18 C -0.101 4.101 19 C -0.143 4.143 20 C -0.142 4.142 21 H 0.095 0.905 22 C 0.018 3.982 23 F -0.219 7.219 24 C -0.049 4.049 25 H 0.063 0.937 26 H 0.125 0.875 27 H 0.154 0.846 28 H 0.155 0.845 29 H 0.140 0.860 30 H 0.150 0.850 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.062 0.938 38 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -4.066 -8.241 -0.986 9.242 hybrid contribution 1.452 0.823 -0.050 1.670 sum -2.614 -7.418 -1.036 7.933 Atomic orbital electron populations 1.70201 1.05827 1.25492 1.44910 1.25286 0.95315 1.00154 0.94089 0.86136 0.79305 0.81870 0.77689 1.20956 1.20251 1.20857 1.20909 0.92998 0.91754 1.53384 0.94258 1.18281 0.87401 0.93541 0.87217 0.99897 1.20280 0.93776 0.94674 0.96383 1.21097 0.99626 1.02534 0.93818 1.21157 0.96502 1.01639 0.96165 1.21211 0.95131 1.00884 0.99187 1.21427 1.00471 1.01563 0.93590 1.21446 0.95874 0.95807 0.97111 1.64803 1.27559 1.25879 1.01947 1.22914 0.98536 0.91087 0.97539 1.22277 1.02186 0.97150 0.92721 1.22675 0.98410 0.98526 0.94585 0.90502 1.22210 1.00735 0.85852 0.89365 1.92719 1.91349 1.60768 1.77110 1.22608 0.94121 0.98785 0.89423 0.93715 0.87465 0.84621 0.84497 0.86013 0.84958 0.96046 0.92239 0.89536 0.89522 0.89852 0.87548 0.93766 0.96550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.71 9.41 21.45 0.20 -44.50 16 2 C 0.06 3.16 5.11 84.66 0.43 3.59 16 3 Si 0.92 43.65 29.55 68.60 2.03 45.68 16 4 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 7 C -0.55 -30.09 7.66 25.60 0.20 -29.90 16 8 H 0.04 2.20 7.83 -2.91 -0.02 2.18 16 9 C 0.24 11.99 1.66 43.42 0.07 12.06 16 10 H -0.02 -0.83 7.87 -2.39 -0.02 -0.85 16 11 C -0.05 -2.35 4.23 -19.86 -0.08 -2.43 16 12 C -0.15 -6.38 9.70 22.27 0.22 -6.17 16 13 C -0.14 -4.88 10.05 22.27 0.22 -4.65 16 14 C -0.15 -5.06 10.05 22.27 0.22 -4.84 16 15 C -0.15 -5.95 10.05 22.27 0.22 -5.72 16 16 C -0.08 -3.84 7.31 22.27 0.16 -3.67 16 17 N -0.48 -21.56 2.87 -866.65 -2.49 -24.05 16 18 C 0.03 1.02 5.79 86.44 0.50 1.52 16 19 C -0.11 -2.94 6.51 31.47 0.20 -2.73 16 20 C -0.12 -3.92 3.42 -9.59 -0.03 -3.96 16 21 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 22 C 0.07 1.87 6.84 71.98 0.49 2.36 16 23 F -0.24 -7.81 17.24 44.97 0.78 -7.04 16 24 C 0.08 3.37 5.02 86.65 0.44 3.80 16 25 H 0.25 13.28 8.31 -92.71 -0.77 12.51 16 26 H 0.11 4.28 8.06 -2.92 -0.02 4.26 16 27 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 28 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 29 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 30 H 0.13 6.67 5.85 -2.91 -0.02 6.65 16 31 H 0.02 0.80 7.64 -2.39 -0.02 0.78 16 32 H 0.06 2.25 7.68 -2.38 -0.02 2.23 16 33 H 0.09 1.94 7.85 -2.39 -0.02 1.93 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 36 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.04 2.21 7.85 -2.38 -0.02 2.19 16 38 H 0.02 0.70 7.91 -2.39 -0.02 0.68 16 Total: -1.00 -60.26 307.34 4.81 -55.45 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 1.03 Total: 15.19 kcal Atomic # 6 Polarization: -44.00 SS G_CDS: 3.27 Total: -40.73 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -2.29 Total: -68.55 kcal Atomic # 9 Polarization: -7.81 SS G_CDS: 0.78 Total: -7.04 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -60.26 4.81 -55.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711436776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.827 kcal (2) G-P(sol) polarization free energy of solvation -60.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds