Wall clock time and date at job start Mon Mar 30 2020 07:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99907 * 2 1 4 4 C 1.53001 * 109.47082 * 57.83126 * 3 2 1 5 5 C 1.50707 * 115.55002 * 54.31230 * 4 3 2 6 6 H 1.07995 * 120.00165 * 220.15207 * 5 4 3 7 7 C 1.37880 * 119.99646 * 40.15372 * 5 4 3 8 8 N 1.31512 * 120.00219 * 7.10936 * 7 5 4 9 9 Si 1.86797 * 119.99650 * 187.10610 * 7 5 4 10 10 H 1.48503 * 109.47012 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47270 * 300.00022 * 9 7 5 12 12 H 1.48502 * 109.46915 * 60.00176 * 9 7 5 13 13 C 1.52998 * 117.51988 * 200.01325 * 4 3 2 14 14 C 1.53000 * 117.50312 * 268.64488 * 4 3 2 15 15 C 1.46897 * 111.00288 * 236.04400 * 2 1 3 16 16 C 1.53009 * 115.54759 * 170.83125 * 15 2 1 17 17 F 1.39894 * 109.47005 * 51.43281 * 16 15 2 18 18 F 1.39901 * 109.46488 * 171.43020 * 16 15 2 19 19 F 1.39894 * 109.46984 * 291.43073 * 16 15 2 20 20 C 1.52998 * 117.50100 * 25.12445 * 15 2 1 21 21 C 1.52997 * 60.00057 * 252.51124 * 20 15 2 22 22 H 1.09001 * 109.47124 * 63.33012 * 1 2 3 23 23 H 1.09000 * 109.46588 * 183.32210 * 1 2 3 24 24 H 1.08994 * 109.47385 * 303.32048 * 1 2 3 25 25 H 1.08997 * 109.47041 * 297.83792 * 3 2 1 26 26 H 1.08999 * 109.47120 * 177.83331 * 3 2 1 27 27 H 0.96997 * 120.00059 * 174.98530 * 8 7 5 28 28 H 1.09004 * 117.50018 * 214.97083 * 13 4 3 29 29 H 1.09002 * 117.50015 * 359.97438 * 13 4 3 30 30 H 1.08999 * 117.49242 * 359.97438 * 14 4 3 31 31 H 1.08991 * 117.50249 * 144.99585 * 14 4 3 32 32 H 1.08997 * 117.49386 * 359.97438 * 20 15 2 33 33 H 1.08994 * 117.50327 * 145.01733 * 20 15 2 34 34 H 1.09007 * 117.49569 * 252.51336 * 21 20 15 35 35 H 1.08996 * 117.50476 * 107.49161 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.4612 2.1228 1.2211 5 6 1.7075 1.4592 2.5516 6 1 0.9386 1.4678 3.3099 7 6 2.9147 0.8413 2.8007 8 7 3.8997 0.9498 1.9362 9 14 3.1509 -0.1498 4.3663 10 1 4.5269 -0.7075 4.3962 11 1 2.9486 0.7307 5.5449 12 1 2.1653 -1.2600 4.4028 13 6 1.4893 3.6519 1.1783 14 6 0.1585 2.9075 1.0536 15 6 1.9955 -0.7660 -1.1375 16 6 3.5043 -0.6548 -1.3662 17 9 4.1784 -0.9287 -0.1714 18 9 3.8966 -1.5747 -2.3445 19 9 3.8172 0.6406 -1.7919 20 6 1.1017 -0.9024 -2.3717 21 6 1.3297 -2.1063 -1.4555 22 1 -0.3633 0.4613 -0.9183 23 1 -0.3632 -1.0260 0.0596 24 1 -0.3634 0.5645 0.8587 25 1 1.6776 1.8826 -0.9087 26 1 3.0843 1.3426 0.0389 27 1 4.7708 0.5772 2.1441 28 1 1.6860 4.1780 2.1125 29 1 1.8889 4.1230 0.2802 30 1 -0.3177 2.8888 0.0733 31 1 -0.5203 2.9438 1.9055 32 1 0.1228 -0.4241 -2.3394 33 1 1.5883 -0.9128 -3.3469 34 1 1.9665 -2.9088 -1.8279 35 1 0.5010 -2.4198 -0.8206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720372760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:12 Heat of formation + Delta-G solvation = -78.595668 kcal Electronic energy + Delta-G solvation = -22066.894736 eV Core-core repulsion = 18459.549109 eV Total energy + Delta-G solvation = -3607.345627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.47085 -47.10904 -46.71726 -38.82425 -36.48828 -32.58183 -31.93937 -27.61658 -25.87338 -25.21395 -23.40432 -22.42329 -21.15103 -19.74989 -18.90337 -17.95749 -17.61282 -17.03557 -15.95170 -15.31743 -14.59213 -13.93315 -13.89361 -13.83536 -13.69904 -13.52647 -13.41797 -13.01966 -12.95449 -12.86432 -12.52201 -11.89414 -11.56311 -11.29426 -11.16462 -10.90118 -10.82986 -10.62250 -10.45232 -10.41485 -10.29981 -9.95030 -9.29622 -8.91289 -8.57017 -7.96007 -7.35904 -5.84154 -3.88331 3.20560 3.40622 3.46467 3.48664 3.64180 4.29614 4.31534 4.52552 4.57685 4.78669 5.16209 5.29817 5.32206 5.55814 5.63532 5.66411 5.84629 5.97839 6.04844 6.13093 6.20252 6.34664 6.52206 6.63255 6.66519 6.71668 6.96287 7.12501 7.34421 7.55496 7.85048 7.95902 8.10415 8.54663 9.04284 9.72760 11.19033 Molecular weight = 263.12amu Principal moments of inertia in cm(-1) A = 0.018516 B = 0.010458 C = 0.008666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.879694 B = 2676.796406 C = 3230.172719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.451 5.451 3 C 0.087 3.913 4 C 0.067 3.933 5 C -0.485 4.485 6 H 0.054 0.946 7 C 0.090 3.910 8 N -0.867 5.867 9 Si 0.890 3.110 10 H -0.289 1.289 11 H -0.283 1.283 12 H -0.277 1.277 13 C -0.201 4.201 14 C -0.219 4.219 15 C -0.007 4.007 16 C 0.497 3.503 17 F -0.148 7.148 18 F -0.194 7.194 19 F -0.179 7.179 20 C -0.204 4.204 21 C -0.148 4.148 22 H 0.016 0.984 23 H 0.055 0.945 24 H 0.093 0.907 25 H -0.007 1.007 26 H 0.128 0.872 27 H 0.260 0.740 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.567 -4.207 -8.103 9.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.172 5.172 3 C -0.039 4.039 4 C 0.066 3.934 5 C -0.522 4.522 6 H 0.072 0.928 7 C -0.115 4.115 8 N -0.503 5.503 9 Si 0.719 3.281 10 H -0.215 1.215 11 H -0.209 1.209 12 H -0.203 1.203 13 C -0.240 4.240 14 C -0.256 4.256 15 C -0.101 4.101 16 C 0.443 3.557 17 F -0.129 7.129 18 F -0.176 7.176 19 F -0.160 7.160 20 C -0.244 4.244 21 C -0.186 4.186 22 H 0.034 0.966 23 H 0.074 0.926 24 H 0.111 0.889 25 H 0.011 0.989 26 H 0.146 0.854 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.168 -4.534 -7.698 9.479 hybrid contribution 0.057 0.009 0.048 0.075 sum -3.110 -4.525 -7.650 9.417 Atomic orbital electron populations 1.22604 0.87640 1.01073 1.01112 1.61837 1.06952 1.15808 1.32598 1.22161 1.04283 0.84088 0.93368 1.18874 0.91757 0.87784 0.94983 1.20185 1.00214 1.34777 0.97029 0.92806 1.24740 0.95945 0.94881 0.95917 1.69703 1.01720 1.44642 1.34211 0.86714 0.77097 0.80801 0.83523 1.21476 1.20887 1.20266 1.22955 1.00771 1.00098 1.00150 1.22977 0.91904 1.11322 0.99412 1.22637 0.88782 1.03355 0.95289 1.19089 0.89284 0.73223 0.74140 1.93308 1.81687 1.93101 1.44798 1.93099 1.92512 1.67555 1.64437 1.93158 1.94243 1.38522 1.90096 1.23646 1.02677 1.02853 0.95205 1.23216 1.03030 0.90704 1.01609 0.96584 0.92630 0.88851 0.98871 0.85450 0.92924 0.90301 0.91992 0.91926 0.90721 0.87130 0.88418 0.87785 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 8.03 60.06 0.48 0.90 16 2 N -0.45 -9.48 4.66 -227.17 -1.06 -10.54 16 3 C 0.09 2.02 3.19 -3.82 -0.01 2.00 16 4 C 0.07 1.61 1.06 -155.66 -0.17 1.44 16 5 C -0.49 -12.86 8.60 -34.44 -0.30 -13.16 16 6 H 0.05 1.44 7.82 -52.49 -0.41 1.03 16 7 C 0.09 2.40 5.29 -17.82 -0.09 2.31 16 8 N -0.87 -23.64 9.99 55.43 0.55 -23.08 16 9 Si 0.89 21.38 29.55 -169.99 -5.02 16.36 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C -0.20 -4.57 9.96 -26.73 -0.27 -4.84 16 14 C -0.22 -4.63 8.17 -26.73 -0.22 -4.85 16 15 C -0.01 -0.13 2.28 -131.60 -0.30 -0.43 16 16 C 0.50 9.72 2.60 37.16 0.10 9.81 16 17 F -0.15 -3.32 16.12 2.25 0.04 -3.28 16 18 F -0.19 -3.33 15.92 2.25 0.04 -3.30 16 19 F -0.18 -3.67 14.92 2.25 0.03 -3.64 16 20 C -0.20 -2.94 9.24 -26.73 -0.25 -3.19 16 21 C -0.15 -2.15 9.34 -26.73 -0.25 -2.40 16 22 H 0.02 0.26 6.32 -51.93 -0.33 -0.07 16 23 H 0.06 0.88 6.35 -51.93 -0.33 0.55 16 24 H 0.09 1.84 5.75 -51.93 -0.30 1.54 16 25 H -0.01 -0.15 8.09 -51.93 -0.42 -0.57 16 26 H 0.13 3.28 3.79 -51.93 -0.20 3.08 16 27 H 0.26 7.01 8.32 -40.82 -0.34 6.68 16 28 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.11 1.51 6.00 -51.93 -0.31 1.20 16 33 H 0.10 1.29 8.03 -51.93 -0.42 0.88 16 34 H 0.10 1.37 7.54 -51.93 -0.39 0.98 16 35 H 0.11 1.51 6.56 -51.93 -0.34 1.17 16 LS Contribution 287.38 15.07 4.33 4.33 Total: -1.00 -27.41 287.38 -6.63 -34.04 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.27 Total: 1.51 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.27 Total: -12.39 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: -0.51 Total: -33.62 kcal Atomic # 9 Polarization: -10.33 SS G_CDS: 0.11 Total: -10.22 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.41 -6.63 -34.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720372760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.557 kcal (2) G-P(sol) polarization free energy of solvation -27.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds