Wall clock time and date at job start Mon Mar 30 2020 07:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 110.99907 * 2 1 4 4 C 1.53001 * 109.47082 * 57.83126 * 3 2 1 5 5 C 1.50707 * 115.55002 * 54.31230 * 4 3 2 6 6 H 1.07995 * 120.00165 * 220.15207 * 5 4 3 7 7 C 1.37880 * 119.99646 * 40.15372 * 5 4 3 8 8 N 1.31512 * 120.00219 * 7.10936 * 7 5 4 9 9 Si 1.86797 * 119.99650 * 187.10610 * 7 5 4 10 10 H 1.48503 * 109.47012 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47270 * 300.00022 * 9 7 5 12 12 H 1.48502 * 109.46915 * 60.00176 * 9 7 5 13 13 C 1.52998 * 117.51988 * 200.01325 * 4 3 2 14 14 C 1.53000 * 117.50312 * 268.64488 * 4 3 2 15 15 C 1.46897 * 111.00288 * 236.04400 * 2 1 3 16 16 C 1.53009 * 115.54759 * 170.83125 * 15 2 1 17 17 F 1.39894 * 109.47005 * 51.43281 * 16 15 2 18 18 F 1.39901 * 109.46488 * 171.43020 * 16 15 2 19 19 F 1.39894 * 109.46984 * 291.43073 * 16 15 2 20 20 C 1.52998 * 117.50100 * 25.12445 * 15 2 1 21 21 C 1.52997 * 60.00057 * 252.51124 * 20 15 2 22 22 H 1.09001 * 109.47124 * 63.33012 * 1 2 3 23 23 H 1.09000 * 109.46588 * 183.32210 * 1 2 3 24 24 H 1.08994 * 109.47385 * 303.32048 * 1 2 3 25 25 H 1.08997 * 109.47041 * 297.83792 * 3 2 1 26 26 H 1.08999 * 109.47120 * 177.83331 * 3 2 1 27 27 H 0.96997 * 120.00059 * 174.98530 * 8 7 5 28 28 H 1.09004 * 117.50018 * 214.97083 * 13 4 3 29 29 H 1.09002 * 117.50015 * 359.97438 * 13 4 3 30 30 H 1.08999 * 117.49242 * 359.97438 * 14 4 3 31 31 H 1.08991 * 117.50249 * 144.99585 * 14 4 3 32 32 H 1.08997 * 117.49386 * 359.97438 * 20 15 2 33 33 H 1.08994 * 117.50327 * 145.01733 * 20 15 2 34 34 H 1.09007 * 117.49569 * 252.51336 * 21 20 15 35 35 H 1.08996 * 117.50476 * 107.49161 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.4612 2.1228 1.2211 5 6 1.7075 1.4592 2.5516 6 1 0.9386 1.4678 3.3099 7 6 2.9147 0.8413 2.8007 8 7 3.8997 0.9498 1.9362 9 14 3.1509 -0.1498 4.3663 10 1 4.5269 -0.7075 4.3962 11 1 2.9486 0.7307 5.5449 12 1 2.1653 -1.2600 4.4028 13 6 1.4893 3.6519 1.1783 14 6 0.1585 2.9075 1.0536 15 6 1.9955 -0.7660 -1.1375 16 6 3.5043 -0.6548 -1.3662 17 9 4.1784 -0.9287 -0.1714 18 9 3.8966 -1.5747 -2.3445 19 9 3.8172 0.6406 -1.7919 20 6 1.1017 -0.9024 -2.3717 21 6 1.3297 -2.1063 -1.4555 22 1 -0.3633 0.4613 -0.9183 23 1 -0.3632 -1.0260 0.0596 24 1 -0.3634 0.5645 0.8587 25 1 1.6776 1.8826 -0.9087 26 1 3.0843 1.3426 0.0389 27 1 4.7708 0.5772 2.1441 28 1 1.6860 4.1780 2.1125 29 1 1.8889 4.1230 0.2802 30 1 -0.3177 2.8888 0.0733 31 1 -0.5203 2.9438 1.9055 32 1 0.1228 -0.4241 -2.3394 33 1 1.5883 -0.9128 -3.3469 34 1 1.9665 -2.9088 -1.8279 35 1 0.5010 -2.4198 -0.8206 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720372760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:12 Heat of formation + Delta-G solvation = -93.789807 kcal Electronic energy + Delta-G solvation = -22067.553603 eV Core-core repulsion = 18459.549109 eV Total energy + Delta-G solvation = -3608.004494 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.97552 -48.58402 -48.31474 -40.24467 -38.14784 -34.05852 -33.93173 -29.06470 -27.62068 -27.00126 -24.94362 -23.56484 -22.89634 -21.20119 -20.74461 -19.45687 -19.14346 -18.50328 -17.75878 -16.68408 -16.53640 -15.64677 -15.45566 -15.36952 -15.22828 -14.98100 -14.85669 -14.60317 -14.56362 -14.44686 -14.11418 -13.46671 -13.19490 -12.89893 -12.76347 -12.60475 -12.43616 -12.23425 -12.09050 -11.97785 -11.77981 -11.59804 -11.07906 -10.83103 -10.41225 -9.86015 -8.81771 -7.84668 -5.93547 1.47484 1.51325 1.55523 1.77685 2.39729 2.54853 2.84292 2.92484 3.21267 3.30862 3.48630 3.74449 3.88677 4.00519 4.34171 4.35243 4.51279 4.54799 4.59538 4.74672 4.79934 4.84906 4.93283 4.97817 5.09855 5.16635 5.23589 5.43989 5.57283 5.70437 6.09500 6.33153 6.35842 6.61147 7.02301 7.68268 9.14430 Molecular weight = 263.12amu Principal moments of inertia in cm(-1) A = 0.018516 B = 0.010458 C = 0.008666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.879694 B = 2676.796406 C = 3230.172719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.476 5.476 3 C 0.102 3.898 4 C 0.039 3.961 5 C -0.494 4.494 6 H 0.043 0.957 7 C 0.053 3.947 8 N -0.880 5.880 9 Si 0.936 3.064 10 H -0.293 1.293 11 H -0.281 1.281 12 H -0.276 1.276 13 C -0.209 4.209 14 C -0.188 4.188 15 C -0.045 4.045 16 C 0.493 3.507 17 F -0.172 7.172 18 F -0.181 7.181 19 F -0.190 7.190 20 C -0.178 4.178 21 C -0.129 4.129 22 H 0.034 0.966 23 H 0.077 0.923 24 H 0.072 0.928 25 H -0.008 1.008 26 H 0.099 0.901 27 H 0.253 0.747 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 -5.128 -9.132 11.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.197 5.197 3 C -0.025 4.025 4 C 0.039 3.961 5 C -0.531 4.531 6 H 0.061 0.939 7 C -0.149 4.149 8 N -0.516 5.516 9 Si 0.764 3.236 10 H -0.219 1.219 11 H -0.207 1.207 12 H -0.202 1.202 13 C -0.248 4.248 14 C -0.225 4.225 15 C -0.138 4.138 16 C 0.438 3.562 17 F -0.153 7.153 18 F -0.163 7.163 19 F -0.172 7.172 20 C -0.218 4.218 21 C -0.166 4.166 22 H 0.052 0.948 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.010 0.990 26 H 0.117 0.883 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.141 0.859 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.720 -5.459 -8.732 11.328 hybrid contribution 0.533 0.296 0.329 0.693 sum -4.186 -5.162 -8.403 10.714 Atomic orbital electron populations 1.22583 0.86091 1.02355 1.01055 1.61695 1.08455 1.14512 1.35007 1.21798 1.02556 0.85619 0.92570 1.18966 0.94335 0.88237 0.94604 1.20344 0.99820 1.35006 0.97964 0.93894 1.25241 0.95991 0.95764 0.97912 1.69855 1.01525 1.45229 1.35029 0.85993 0.76592 0.79727 0.81320 1.21867 1.20653 1.20168 1.22950 1.02400 0.99386 1.00058 1.22922 0.90835 1.08190 1.00603 1.22709 0.87941 1.06125 0.97033 1.19394 0.90276 0.72939 0.73600 1.93251 1.82401 1.93237 1.46408 1.93112 1.92548 1.66933 1.63709 1.93128 1.94455 1.39479 1.90118 1.23741 1.01945 1.01748 0.94329 1.23388 1.02546 0.89877 1.00832 0.94774 0.90427 0.90904 0.99013 0.88343 0.93691 0.91316 0.91237 0.89795 0.90411 0.85865 0.87022 0.86405 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 8.03 127.69 1.03 1.91 16 2 N -0.48 -19.32 4.66 -872.62 -4.07 -23.39 16 3 C 0.10 4.66 3.19 86.30 0.28 4.93 16 4 C 0.04 1.88 1.06 -52.93 -0.06 1.82 16 5 C -0.49 -26.26 8.60 25.60 0.22 -26.04 16 6 H 0.04 2.31 7.82 -2.91 -0.02 2.29 16 7 C 0.05 2.87 5.29 84.66 0.45 3.32 16 8 N -0.88 -48.79 9.99 21.45 0.21 -48.58 16 9 Si 0.94 44.13 29.55 68.60 2.03 46.15 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 C -0.21 -9.41 9.96 30.59 0.30 -9.10 16 14 C -0.19 -7.66 8.17 30.59 0.25 -7.41 16 15 C -0.05 -1.56 2.28 3.53 0.01 -1.55 16 16 C 0.49 18.92 2.60 71.99 0.19 19.10 16 17 F -0.17 -7.80 16.12 44.97 0.72 -7.08 16 18 F -0.18 -5.95 15.92 44.97 0.72 -5.24 16 19 F -0.19 -7.85 14.92 44.97 0.67 -7.18 16 20 C -0.18 -4.49 9.24 30.59 0.28 -4.21 16 21 C -0.13 -3.30 9.34 30.59 0.29 -3.01 16 22 H 0.03 1.00 6.32 -2.39 -0.02 0.99 16 23 H 0.08 2.21 6.35 -2.39 -0.02 2.20 16 24 H 0.07 2.74 5.75 -2.39 -0.01 2.72 16 25 H -0.01 -0.36 8.09 -2.39 -0.02 -0.38 16 26 H 0.10 5.13 3.79 -2.39 -0.01 5.12 16 27 H 0.25 13.98 8.32 -92.71 -0.77 13.21 16 28 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 29 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 30 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.12 2.81 6.00 -2.39 -0.01 2.80 16 33 H 0.11 2.52 8.03 -2.39 -0.02 2.50 16 34 H 0.12 2.69 7.54 -2.38 -0.02 2.67 16 35 H 0.12 2.85 6.56 -2.39 -0.02 2.84 16 Total: -1.00 -58.64 287.38 4.63 -54.01 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.11 Total: 11.53 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 3.23 Total: -20.24 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -3.85 Total: -71.97 kcal Atomic # 9 Polarization: -21.60 SS G_CDS: 2.11 Total: -19.49 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -58.64 4.63 -54.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720372760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.779 kcal (2) G-P(sol) polarization free energy of solvation -58.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds