Wall clock time and date at job start Mon Mar 30 2020 07:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99890 * 2 1 4 4 H 1.08997 * 112.85155 * 341.19494 * 3 2 1 5 5 C 1.53788 * 113.61125 * 112.50410 * 3 2 1 6 6 C 1.53951 * 87.11118 * 89.18798 * 5 3 2 7 7 C 1.53785 * 113.61336 * 209.99947 * 3 2 1 8 8 H 1.08997 * 113.61012 * 156.25685 * 7 3 2 9 9 N 1.46498 * 113.61715 * 25.43407 * 7 3 2 10 10 C 1.39773 * 120.00174 * 156.52940 * 9 7 3 11 11 C 1.38952 * 120.00624 * 180.02562 * 10 9 7 12 12 C 1.38018 * 119.99204 * 180.02562 * 11 10 9 13 13 C 1.38898 * 120.00499 * 0.02562 * 12 11 10 14 14 O 1.35795 * 119.98946 * 179.97438 * 13 12 11 15 15 C 1.34811 * 117.00069 * 5.54594 * 14 13 12 16 16 H 1.07996 * 120.00278 * 354.94303 * 15 14 13 17 17 C 1.38630 * 119.99901 * 174.66583 * 15 14 13 18 18 N 1.31579 * 119.99909 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00157 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47341 * 89.99691 * 19 17 15 21 21 H 1.48494 * 109.46949 * 209.99895 * 19 17 15 22 22 H 1.48501 * 109.46926 * 330.00084 * 19 17 15 23 23 C 1.38893 * 120.01535 * 0.25204 * 13 12 11 24 24 C 1.38013 * 120.00341 * 359.44607 * 23 13 12 25 25 H 1.09001 * 109.47264 * 299.99897 * 1 2 3 26 26 H 1.09006 * 109.47344 * 60.00049 * 1 2 3 27 27 H 1.09003 * 109.47535 * 179.97438 * 1 2 3 28 28 H 1.09000 * 113.60787 * 203.66599 * 5 3 2 29 29 H 1.08995 * 113.61043 * 334.48136 * 5 3 2 30 30 H 1.08998 * 113.61498 * 270.84395 * 6 5 3 31 31 H 1.09004 * 113.67046 * 139.88999 * 6 5 3 32 32 H 0.96998 * 119.99900 * 336.53237 * 9 7 3 33 33 H 1.07992 * 120.00371 * 0.04328 * 11 10 9 34 34 H 1.08001 * 119.99232 * 179.97438 * 12 11 10 35 35 H 0.97000 * 119.99981 * 180.02562 * 18 17 15 36 36 H 1.07999 * 120.00179 * 179.70368 * 23 13 12 37 37 H 1.08004 * 120.00605 * 180.27551 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7534 1.6488 1.3018 6 6 4.0084 1.0343 0.6558 7 6 3.3755 1.3719 -0.7045 8 1 3.6304 2.3668 -1.0697 9 7 3.5657 0.3288 -1.7154 10 6 4.4820 0.5202 -2.7534 11 6 4.6620 -0.4689 -3.7126 12 6 5.5673 -0.2797 -4.7372 13 6 6.2986 0.8989 -4.8092 14 8 7.1895 1.0845 -5.8170 15 6 7.2335 0.1388 -6.7768 16 1 6.6378 -0.7568 -6.6802 17 6 8.0391 0.3186 -7.8906 18 7 8.7603 1.4125 -8.0112 19 14 8.0995 -0.9913 -9.2210 20 1 7.0553 -0.7116 -10.2390 21 1 9.4365 -0.9793 -9.8670 22 1 7.8547 -2.3245 -8.6143 23 6 6.1230 1.8854 -3.8473 24 6 5.2134 1.6994 -2.8261 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 2.8388 2.7197 1.4863 29 1 2.3916 1.0973 2.1695 30 1 4.1124 -0.0358 0.8353 31 1 4.9233 1.5899 0.8617 32 1 3.0557 -0.4947 -1.6644 33 1 4.0936 -1.3853 -3.6566 34 1 5.7075 -1.0487 -5.4825 35 1 9.3237 1.5385 -8.7907 36 1 6.6952 2.7998 -3.9008 37 1 5.0736 2.4683 -2.0806 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724155257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:38 Heat of formation + Delta-G solvation = -35.228568 kcal Electronic energy + Delta-G solvation = -19111.756258 eV Core-core repulsion = 16048.147910 eV Total energy + Delta-G solvation = -3063.608348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.00022 -40.32456 -38.42129 -36.81042 -34.57620 -33.76599 -31.78302 -28.95222 -27.73215 -27.25678 -25.69514 -25.33477 -23.57582 -22.29394 -20.62009 -19.60417 -18.91435 -17.99555 -17.63080 -16.85531 -16.30954 -16.02679 -16.00360 -15.41874 -15.37790 -15.01480 -14.63256 -14.44342 -14.13794 -14.05186 -13.63658 -13.37018 -13.09788 -12.97923 -12.65703 -12.58715 -12.25773 -12.14036 -12.04775 -11.66295 -11.32406 -11.07992 -10.84384 -10.46436 -10.10805 -9.76598 -8.38539 -7.89350 -6.01961 0.59769 0.94434 1.37047 1.46978 1.54428 2.23441 2.51347 2.89721 2.95204 3.26164 3.62351 3.68256 3.74536 4.01712 4.06777 4.16026 4.20712 4.43300 4.53287 4.58031 4.59098 4.62694 4.75362 4.87202 4.93514 5.00334 5.09863 5.12557 5.20071 5.27677 5.35617 5.50951 5.57188 5.80030 6.00711 6.12455 6.26569 6.70136 7.06025 7.09129 7.94475 8.86056 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043402 B = 0.003595 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.972672 B = 7787.233307 C = 8238.048007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.387 6.387 3 C 0.058 3.942 4 H 0.089 0.911 5 C -0.146 4.146 6 C -0.154 4.154 7 C 0.125 3.875 8 H 0.116 0.884 9 N -0.730 5.730 10 C 0.153 3.847 11 C -0.150 4.150 12 C -0.193 4.193 13 C 0.061 3.939 14 O -0.242 6.242 15 C -0.407 4.407 16 H 0.097 0.903 17 C -0.028 4.028 18 N -0.927 5.927 19 Si 1.017 2.983 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.254 1.254 23 C -0.153 4.153 24 C -0.146 4.146 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.403 0.597 33 H 0.134 0.866 34 H 0.118 0.882 35 H 0.270 0.730 36 H 0.115 0.885 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.539 -1.438 17.607 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.305 6.305 3 C -0.001 4.001 4 H 0.107 0.893 5 C -0.184 4.184 6 C -0.193 4.193 7 C 0.018 3.982 8 H 0.133 0.867 9 N -0.362 5.362 10 C 0.052 3.948 11 C -0.172 4.172 12 C -0.212 4.212 13 C 0.011 3.989 14 O -0.150 6.150 15 C -0.483 4.483 16 H 0.114 0.886 17 C -0.224 4.224 18 N -0.567 5.567 19 Si 0.836 3.164 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.178 1.178 23 C -0.173 4.173 24 C -0.168 4.168 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.239 0.761 33 H 0.152 0.848 34 H 0.135 0.865 35 H 0.079 0.921 36 H 0.133 0.867 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.141 -1.193 17.538 23.865 hybrid contribution 0.060 -0.563 -0.847 1.019 sum -16.082 -1.756 16.691 23.244 Atomic orbital electron populations 1.22971 0.79440 1.03717 1.00765 1.87789 1.21305 1.26837 1.94601 1.23678 0.94274 0.85662 0.96533 0.89275 1.23293 0.95682 1.02419 0.97026 1.23467 0.98374 1.01182 0.96266 1.22932 0.95229 0.93093 0.86960 0.86659 1.44197 1.44484 1.21030 1.26470 1.17615 0.93003 0.94054 0.90146 1.20478 1.01437 0.99818 0.95466 1.21037 1.00766 0.97966 1.01456 1.19731 0.92481 0.95468 0.91212 1.83931 1.52355 1.47346 1.31419 1.21753 1.28083 0.99516 0.98972 0.88556 1.26523 0.95454 1.00465 0.99996 1.70203 1.28007 1.28153 1.30300 0.84614 0.78297 0.76905 0.76556 1.18948 1.19692 1.17791 1.20245 1.02525 0.98464 0.96033 1.20468 0.98633 0.97844 0.99863 0.92748 0.93608 0.88715 0.87185 0.90250 0.91013 0.91010 0.76071 0.84836 0.86453 0.92144 0.86691 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.85 113.37 1.23 1.56 16 2 O -0.39 -7.05 9.55 -148.98 -1.42 -8.47 16 3 C 0.06 0.93 4.31 31.12 0.13 1.06 16 4 H 0.09 1.17 7.87 -2.39 -0.02 1.15 16 5 C -0.15 -1.97 7.92 31.18 0.25 -1.72 16 6 C -0.15 -2.84 7.83 31.18 0.24 -2.60 16 7 C 0.12 2.51 3.95 45.52 0.18 2.69 16 8 H 0.12 2.19 6.20 -2.39 -0.01 2.18 16 9 N -0.73 -18.89 5.51 -316.31 -1.74 -20.63 16 10 C 0.15 5.12 6.66 38.22 0.25 5.37 16 11 C -0.15 -5.55 9.89 22.39 0.22 -5.32 16 12 C -0.19 -8.83 9.16 22.38 0.20 -8.63 16 13 C 0.06 3.15 6.65 22.58 0.15 3.30 16 14 O -0.24 -15.18 9.76 -23.05 -0.22 -15.41 16 15 C -0.41 -24.63 9.48 67.91 0.64 -23.98 16 16 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 17 C -0.03 -1.67 5.49 84.82 0.47 -1.20 16 18 N -0.93 -58.80 13.67 21.61 0.30 -58.50 16 19 Si 1.02 44.50 29.55 68.60 2.03 46.52 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 23 C -0.15 -6.75 9.98 22.37 0.22 -6.53 16 24 C -0.15 -5.12 9.25 22.39 0.21 -4.91 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.40 10.02 7.79 -92.71 -0.72 9.29 16 33 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.12 5.47 5.63 -2.91 -0.02 5.46 16 35 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 37 H 0.15 4.03 6.08 -2.91 -0.02 4.01 16 Total: -1.00 -73.51 310.97 3.70 -69.81 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.36 Total: 27.58 kcal Atomic # 6 Polarization: -45.32 SS G_CDS: 4.41 Total: -40.91 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -1.45 Total: -79.13 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -1.65 Total: -23.87 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -73.51 3.70 -69.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724155257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.584 kcal (2) G-P(sol) polarization free energy of solvation -73.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds