Wall clock time and date at job start Mon Mar 30 2020 07:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99917 * 2 1 4 4 H 1.09001 * 112.90797 * 18.74491 * 3 2 1 5 5 C 1.53784 * 113.61652 * 247.49483 * 3 2 1 6 6 C 1.53784 * 87.07817 * 270.88343 * 5 3 2 7 7 C 1.53777 * 87.08346 * 334.56592 * 6 5 3 8 8 H 1.09004 * 113.61223 * 270.88965 * 7 6 5 9 9 N 1.46499 * 113.61622 * 139.98394 * 7 6 5 10 10 C 1.39779 * 119.99998 * 104.50258 * 9 7 6 11 11 C 1.38947 * 120.00648 * 359.72775 * 10 9 7 12 12 C 1.38017 * 119.99474 * 179.71887 * 11 10 9 13 13 C 1.38904 * 120.00193 * 0.55594 * 12 11 10 14 14 O 1.35791 * 119.99355 * 179.69534 * 13 12 11 15 15 C 1.34807 * 117.00075 * 174.47838 * 14 13 12 16 16 H 1.07996 * 120.00432 * 5.06026 * 15 14 13 17 17 C 1.38622 * 120.00201 * 185.06235 * 15 14 13 18 18 N 1.31585 * 119.99730 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00200 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47312 * 90.00015 * 19 17 15 21 21 H 1.48502 * 109.47171 * 209.99704 * 19 17 15 22 22 H 1.48496 * 109.47442 * 330.00141 * 19 17 15 23 23 C 1.38894 * 120.01278 * 359.72234 * 13 12 11 24 24 C 1.38013 * 120.00621 * 0.02562 * 23 13 12 25 25 H 1.08993 * 109.47298 * 299.99870 * 1 2 3 26 26 H 1.09000 * 109.47006 * 60.00661 * 1 2 3 27 27 H 1.09008 * 109.46778 * 180.02562 * 1 2 3 28 28 H 1.08998 * 113.61662 * 156.33280 * 5 3 2 29 29 H 1.09003 * 113.68846 * 25.44422 * 5 3 2 30 30 H 1.08998 * 113.60862 * 220.01266 * 6 5 3 31 31 H 1.08994 * 113.61178 * 89.11675 * 6 5 3 32 32 H 0.96998 * 119.99393 * 284.50730 * 9 7 6 33 33 H 1.07994 * 120.00747 * 359.97438 * 11 10 9 34 34 H 1.07993 * 119.99997 * 180.24935 * 12 11 10 35 35 H 0.97003 * 120.00002 * 180.02562 * 18 17 15 36 36 H 1.07999 * 119.99631 * 179.97438 * 23 13 12 37 37 H 1.08008 * 120.00094 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3142 2.0798 0.3227 5 6 2.7535 1.6489 -1.3017 6 6 4.0062 1.0331 -0.6563 7 6 3.3755 1.3719 0.7046 8 1 3.6310 2.3672 1.0685 9 7 3.5656 0.3288 1.7156 10 6 4.5039 0.5074 2.7361 11 6 5.2604 1.6716 2.7886 12 6 6.1827 1.8502 3.7997 13 6 6.3629 0.8610 4.7582 14 8 7.2747 1.0342 5.7493 15 6 7.3203 0.0905 6.7108 16 1 6.7081 -0.7954 6.6275 17 6 8.1528 0.2569 7.8067 18 7 8.8990 1.3360 7.9081 19 14 8.2164 -1.0511 9.1386 20 1 9.2666 -2.0466 8.8051 21 1 8.5336 -0.4150 10.4425 22 1 6.8996 -1.7318 9.2273 23 6 5.6109 -0.3054 4.7025 24 6 4.6848 -0.4822 3.6946 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 2.8389 2.7197 -1.4863 29 1 2.3936 1.0972 -2.1702 30 1 4.9214 1.5875 -0.8637 31 1 4.1085 -0.0371 -0.8358 32 1 3.0404 -0.4857 1.6766 33 1 5.1239 2.4386 2.0407 34 1 6.7679 2.7568 3.8429 35 1 9.4818 1.4524 8.6747 36 1 5.7515 -1.0745 5.4476 37 1 4.1004 -1.3894 3.6512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724155258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:41 Heat of formation + Delta-G solvation = -13.851913 kcal Electronic energy + Delta-G solvation = -19111.561313 eV Core-core repulsion = 16048.879927 eV Total energy + Delta-G solvation = -3062.681387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.96009 -38.75676 -36.86237 -35.83070 -33.01144 -31.88343 -30.12984 -27.44365 -27.06384 -25.36737 -24.91911 -24.09664 -21.99753 -20.67970 -19.67313 -17.79750 -17.32531 -16.66186 -16.56771 -15.70144 -15.26741 -14.78862 -14.38202 -14.06091 -13.90619 -13.48926 -13.47192 -13.16403 -12.76363 -12.38111 -12.36448 -12.01042 -11.85747 -11.54273 -11.43586 -11.09507 -10.99651 -10.79025 -10.50831 -10.44519 -10.30854 -9.73876 -9.18185 -9.09015 -8.38102 -8.11776 -6.32538 -6.28125 -3.85617 2.25593 2.62214 3.21009 3.21784 3.26397 3.34799 4.01779 4.09658 4.40019 4.50677 4.70661 4.81563 4.92087 5.10044 5.11245 5.22217 5.24340 5.36275 5.39993 5.53470 5.63632 5.72268 5.83365 5.89636 5.99389 6.14302 6.27392 6.32355 6.60321 6.90076 6.92987 7.01840 7.19657 7.37383 7.51516 7.71287 8.08017 8.16153 8.38472 9.17434 9.92704 10.90234 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043588 B = 0.003594 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.218661 B = 7789.574141 C = 8245.413824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.055 3.945 4 H 0.074 0.926 5 C -0.161 4.161 6 C -0.152 4.152 7 C 0.143 3.857 8 H 0.108 0.892 9 N -0.740 5.740 10 C 0.125 3.875 11 C -0.149 4.149 12 C -0.150 4.150 13 C 0.112 3.888 14 O -0.190 6.190 15 C -0.386 4.386 16 H 0.088 0.912 17 C 0.035 3.965 18 N -0.870 5.870 19 Si 0.937 3.063 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.189 4.189 24 C -0.143 4.143 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.398 0.602 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.267 0.733 36 H 0.127 0.873 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.453 -0.588 -15.433 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C -0.005 4.005 4 H 0.092 0.908 5 C -0.199 4.199 6 C -0.192 4.192 7 C 0.035 3.965 8 H 0.126 0.874 9 N -0.374 5.374 10 C 0.027 3.973 11 C -0.171 4.171 12 C -0.169 4.169 13 C 0.060 3.940 14 O -0.095 6.095 15 C -0.463 4.463 16 H 0.105 0.895 17 C -0.167 4.167 18 N -0.507 5.507 19 Si 0.763 3.237 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.209 4.209 24 C -0.165 4.165 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.233 0.767 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.076 0.924 36 H 0.144 0.856 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.982 -0.336 -15.278 20.713 hybrid contribution -0.430 -0.803 0.583 1.081 sum -14.412 -1.139 -14.695 20.615 Atomic orbital electron populations 1.22816 0.80923 1.02781 0.99969 1.87825 1.19640 1.26320 1.94486 1.23687 0.94940 0.85348 0.96510 0.90849 1.23292 0.97814 1.01231 0.97554 1.23494 0.97166 1.01749 0.96770 1.22511 0.92966 0.93634 0.87374 0.87446 1.44051 1.44005 1.20953 1.28383 1.17466 0.93628 0.95350 0.90833 1.20177 0.99571 0.96988 1.00349 1.20018 1.01829 0.99025 0.96078 1.19231 0.90687 0.93277 0.90851 1.83981 1.48120 1.46709 1.30658 1.21233 1.26120 0.99756 0.99164 0.89482 1.25208 0.96078 0.97783 0.97654 1.70053 1.24701 1.26061 1.29877 0.85770 0.78841 0.79548 0.79576 1.20085 1.20440 1.19376 1.20991 0.99898 0.99162 1.00826 1.20242 1.01645 0.98286 0.96323 0.93855 0.94128 0.89580 0.89304 0.90687 0.91347 0.89614 0.76670 0.87191 0.86576 0.92355 0.85552 0.87651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 101.05 1.10 1.34 16 2 O -0.36 -3.90 9.54 -35.23 -0.34 -4.24 16 3 C 0.05 0.54 4.31 -25.92 -0.11 0.43 16 4 H 0.07 0.64 7.87 -51.93 -0.41 0.23 16 5 C -0.16 -1.40 7.91 -25.92 -0.21 -1.61 16 6 C -0.15 -1.65 7.81 -25.92 -0.20 -1.86 16 7 C 0.14 1.70 3.91 -67.12 -0.26 1.44 16 8 H 0.11 1.24 6.28 -51.93 -0.33 0.92 16 9 N -0.74 -10.76 5.52 -51.33 -0.28 -11.04 16 10 C 0.13 2.25 6.66 -83.71 -0.56 1.69 16 11 C -0.15 -2.75 9.25 -39.40 -0.36 -3.12 16 12 C -0.15 -3.26 9.99 -39.42 -0.39 -3.65 16 13 C 0.11 2.80 6.65 -39.09 -0.26 2.54 16 14 O -0.19 -5.59 9.75 -0.01 0.00 -5.59 16 15 C -0.39 -11.15 9.48 30.87 0.29 -10.86 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 17 C 0.04 1.01 5.49 -17.52 -0.10 0.91 16 18 N -0.87 -26.34 13.67 55.48 0.76 -25.58 16 19 Si 0.94 21.21 29.55 -169.99 -5.02 16.19 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 C -0.19 -4.26 9.16 -39.42 -0.36 -4.62 16 24 C -0.14 -2.75 9.89 -39.40 -0.39 -3.14 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.56 8.14 -51.92 -0.42 0.13 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.40 5.59 7.77 -40.82 -0.32 5.27 16 33 H 0.11 1.71 6.11 -52.49 -0.32 1.39 16 34 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.13 2.85 5.63 -52.49 -0.30 2.56 16 37 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 311.00 15.07 4.69 4.69 Total: -1.00 -32.04 311.00 -6.89 -38.93 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -4.88 Total: 7.15 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: -1.81 Total: -20.51 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.48 Total: -36.62 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.34 Total: -9.83 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.04 -6.89 -38.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724155258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.079 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds