Wall clock time and date at job start Mon Mar 30 2020 07:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99917 * 2 1 4 4 H 1.09001 * 112.90797 * 18.74491 * 3 2 1 5 5 C 1.53784 * 113.61652 * 247.49483 * 3 2 1 6 6 C 1.53784 * 87.07817 * 270.88343 * 5 3 2 7 7 C 1.53777 * 87.08346 * 334.56592 * 6 5 3 8 8 H 1.09004 * 113.61223 * 270.88965 * 7 6 5 9 9 N 1.46499 * 113.61622 * 139.98394 * 7 6 5 10 10 C 1.39779 * 119.99998 * 104.50258 * 9 7 6 11 11 C 1.38947 * 120.00648 * 359.72775 * 10 9 7 12 12 C 1.38017 * 119.99474 * 179.71887 * 11 10 9 13 13 C 1.38904 * 120.00193 * 0.55594 * 12 11 10 14 14 O 1.35791 * 119.99355 * 179.69534 * 13 12 11 15 15 C 1.34807 * 117.00075 * 174.47838 * 14 13 12 16 16 H 1.07996 * 120.00432 * 5.06026 * 15 14 13 17 17 C 1.38622 * 120.00201 * 185.06235 * 15 14 13 18 18 N 1.31585 * 119.99730 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00200 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47312 * 90.00015 * 19 17 15 21 21 H 1.48502 * 109.47171 * 209.99704 * 19 17 15 22 22 H 1.48496 * 109.47442 * 330.00141 * 19 17 15 23 23 C 1.38894 * 120.01278 * 359.72234 * 13 12 11 24 24 C 1.38013 * 120.00621 * 0.02562 * 23 13 12 25 25 H 1.08993 * 109.47298 * 299.99870 * 1 2 3 26 26 H 1.09000 * 109.47006 * 60.00661 * 1 2 3 27 27 H 1.09008 * 109.46778 * 180.02562 * 1 2 3 28 28 H 1.08998 * 113.61662 * 156.33280 * 5 3 2 29 29 H 1.09003 * 113.68846 * 25.44422 * 5 3 2 30 30 H 1.08998 * 113.60862 * 220.01266 * 6 5 3 31 31 H 1.08994 * 113.61178 * 89.11675 * 6 5 3 32 32 H 0.96998 * 119.99393 * 284.50730 * 9 7 6 33 33 H 1.07994 * 120.00747 * 359.97438 * 11 10 9 34 34 H 1.07993 * 119.99997 * 180.24935 * 12 11 10 35 35 H 0.97003 * 120.00002 * 180.02562 * 18 17 15 36 36 H 1.07999 * 119.99631 * 179.97438 * 23 13 12 37 37 H 1.08008 * 120.00094 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3142 2.0798 0.3227 5 6 2.7535 1.6489 -1.3017 6 6 4.0062 1.0331 -0.6563 7 6 3.3755 1.3719 0.7046 8 1 3.6310 2.3672 1.0685 9 7 3.5656 0.3288 1.7156 10 6 4.5039 0.5074 2.7361 11 6 5.2604 1.6716 2.7886 12 6 6.1827 1.8502 3.7997 13 6 6.3629 0.8610 4.7582 14 8 7.2747 1.0342 5.7493 15 6 7.3203 0.0905 6.7108 16 1 6.7081 -0.7954 6.6275 17 6 8.1528 0.2569 7.8067 18 7 8.8990 1.3360 7.9081 19 14 8.2164 -1.0511 9.1386 20 1 9.2666 -2.0466 8.8051 21 1 8.5336 -0.4150 10.4425 22 1 6.8996 -1.7318 9.2273 23 6 5.6109 -0.3054 4.7025 24 6 4.6848 -0.4822 3.6946 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 2.8389 2.7197 -1.4863 29 1 2.3936 1.0972 -2.1702 30 1 4.9214 1.5875 -0.8637 31 1 4.1085 -0.0371 -0.8358 32 1 3.0404 -0.4857 1.6766 33 1 5.1239 2.4386 2.0407 34 1 6.7679 2.7568 3.8429 35 1 9.4818 1.4524 8.6747 36 1 5.7515 -1.0745 5.4476 37 1 4.1004 -1.3894 3.6512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724155258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:41 Heat of formation + Delta-G solvation = -35.228778 kcal Electronic energy + Delta-G solvation = -19112.488284 eV Core-core repulsion = 16048.879927 eV Total energy + Delta-G solvation = -3063.608357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.00523 -40.32938 -38.42131 -36.81405 -34.57732 -33.76682 -31.78162 -28.95533 -27.73199 -27.25696 -25.69436 -25.33260 -23.57318 -22.29410 -20.61756 -19.60700 -18.91307 -17.99442 -17.63498 -16.85809 -16.30786 -16.02743 -16.00165 -15.41851 -15.37826 -15.01490 -14.63597 -14.44262 -14.14218 -14.05098 -13.63224 -13.37079 -13.10021 -12.97383 -12.65625 -12.58932 -12.26710 -12.12698 -12.05646 -11.66765 -11.31768 -11.07568 -10.84555 -10.46658 -10.10866 -9.76528 -8.38519 -7.89394 -6.01947 0.59827 0.94507 1.37072 1.46875 1.54539 2.23452 2.51401 2.89561 2.95094 3.26354 3.62322 3.68302 3.74284 4.01700 4.07041 4.16117 4.20695 4.43275 4.53469 4.58153 4.59073 4.62708 4.75273 4.87307 4.93537 5.00543 5.09858 5.12622 5.20056 5.27728 5.35721 5.50994 5.57196 5.80057 6.00767 6.12477 6.26536 6.70115 7.06069 7.09186 7.94503 8.86084 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043588 B = 0.003594 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.218661 B = 7789.574141 C = 8245.413824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.387 6.387 3 C 0.058 3.942 4 H 0.090 0.910 5 C -0.146 4.146 6 C -0.154 4.154 7 C 0.125 3.875 8 H 0.115 0.885 9 N -0.730 5.730 10 C 0.153 3.847 11 C -0.146 4.146 12 C -0.153 4.153 13 C 0.061 3.939 14 O -0.242 6.242 15 C -0.407 4.407 16 H 0.097 0.903 17 C -0.028 4.028 18 N -0.927 5.927 19 Si 1.017 2.983 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.254 1.254 23 C -0.193 4.193 24 C -0.150 4.150 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.403 0.597 33 H 0.146 0.854 34 H 0.115 0.885 35 H 0.270 0.730 36 H 0.118 0.882 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.904 -1.239 -17.338 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.305 6.305 3 C -0.001 4.001 4 H 0.108 0.892 5 C -0.184 4.184 6 C -0.193 4.193 7 C 0.018 3.982 8 H 0.133 0.867 9 N -0.362 5.362 10 C 0.052 3.948 11 C -0.168 4.168 12 C -0.173 4.173 13 C 0.011 3.989 14 O -0.150 6.150 15 C -0.483 4.483 16 H 0.114 0.886 17 C -0.224 4.224 18 N -0.567 5.567 19 Si 0.836 3.164 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.178 1.178 23 C -0.212 4.212 24 C -0.172 4.172 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.239 0.761 33 H 0.164 0.836 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.135 0.865 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.505 -0.995 -17.272 23.911 hybrid contribution 0.086 -0.576 0.830 1.014 sum -16.419 -1.571 -16.442 23.289 Atomic orbital electron populations 1.22974 0.79422 1.03723 1.00782 1.87792 1.21321 1.26823 1.94597 1.23664 0.94236 0.85677 0.96496 0.89225 1.23268 0.95716 1.02418 0.97041 1.23439 0.98404 1.01161 0.96323 1.22923 0.95274 0.93061 0.86937 0.86692 1.44196 1.42477 1.21920 1.27604 1.17611 0.92633 0.94187 0.90378 1.20463 0.98287 0.98093 0.99934 1.20249 1.02430 0.98425 0.96176 1.19731 0.92140 0.95513 0.91505 1.83928 1.50891 1.47899 1.32328 1.21749 1.26554 1.00281 0.99735 0.88557 1.26522 0.95357 1.00467 1.00097 1.70206 1.26412 1.28839 1.31217 0.84613 0.79603 0.76328 0.75818 1.18950 1.19679 1.17803 1.21035 1.00370 0.98191 1.01629 1.20478 1.01178 0.99846 0.95694 0.93572 0.92747 0.88717 0.87164 0.90265 0.91052 0.91042 0.76066 0.83647 0.86696 0.92146 0.86454 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.85 113.37 1.23 1.56 16 2 O -0.39 -7.03 9.54 -148.98 -1.42 -8.45 16 3 C 0.06 0.94 4.31 31.12 0.13 1.07 16 4 H 0.09 1.17 7.87 -2.39 -0.02 1.15 16 5 C -0.15 -1.98 7.91 31.12 0.25 -1.73 16 6 C -0.15 -2.86 7.81 31.12 0.24 -2.62 16 7 C 0.12 2.52 3.91 45.52 0.18 2.70 16 8 H 0.12 2.18 6.28 -2.39 -0.01 2.17 16 9 N -0.73 -18.89 5.52 -316.32 -1.75 -20.64 16 10 C 0.15 5.12 6.66 38.21 0.25 5.37 16 11 C -0.15 -5.11 9.25 22.39 0.21 -4.91 16 12 C -0.15 -6.76 9.99 22.38 0.22 -6.54 16 13 C 0.06 3.15 6.65 22.59 0.15 3.30 16 14 O -0.24 -15.18 9.75 -22.96 -0.22 -15.41 16 15 C -0.41 -24.63 9.48 67.91 0.64 -23.98 16 16 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 17 C -0.03 -1.67 5.49 84.82 0.47 -1.21 16 18 N -0.93 -58.82 13.67 21.61 0.30 -58.52 16 19 Si 1.02 44.50 29.55 68.60 2.03 46.53 16 20 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 23 C -0.19 -8.84 9.16 22.37 0.20 -8.63 16 24 C -0.15 -5.55 9.89 22.39 0.22 -5.33 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.40 10.01 7.77 -92.71 -0.72 9.29 16 33 H 0.15 4.03 6.11 -2.91 -0.02 4.02 16 34 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 35 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.12 5.47 5.63 -2.91 -0.02 5.46 16 37 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -73.55 311.00 3.70 -69.85 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.36 Total: 27.57 kcal Atomic # 6 Polarization: -45.34 SS G_CDS: 4.40 Total: -40.94 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -1.45 Total: -79.16 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -1.64 Total: -23.85 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -73.55 3.70 -69.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724155258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.624 kcal (2) G-P(sol) polarization free energy of solvation -73.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds