Wall clock time and date at job start Mon Mar 30 2020 07:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99999 * 2 1 4 4 H 1.09002 * 112.84876 * 341.19742 * 3 2 1 5 5 C 1.53776 * 113.68893 * 112.46472 * 3 2 1 6 6 C 1.53784 * 87.08053 * 139.99106 * 5 3 2 7 7 C 1.53781 * 113.61344 * 210.00501 * 3 2 1 8 8 H 1.08998 * 113.61256 * 334.56516 * 7 3 2 9 9 N 1.46495 * 113.61614 * 105.38948 * 7 3 2 10 10 C 1.39790 * 119.99979 * 204.99821 * 9 7 3 11 11 C 1.38944 * 120.00894 * 179.97438 * 10 9 7 12 12 C 1.38005 * 119.99573 * 179.97438 * 11 10 9 13 13 C 1.38894 * 120.00944 * 0.02562 * 12 11 10 14 14 O 1.35793 * 120.00058 * 179.97438 * 13 12 11 15 15 C 1.34813 * 116.99703 * 5.54803 * 14 13 12 16 16 H 1.08001 * 119.99724 * 354.94003 * 15 14 13 17 17 C 1.38621 * 119.99959 * 174.94295 * 15 14 13 18 18 N 1.31584 * 120.00274 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99920 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46930 * 179.97438 * 19 17 15 21 21 H 1.48502 * 109.46912 * 60.00019 * 19 17 15 22 22 H 1.48501 * 109.47182 * 299.99907 * 19 17 15 23 23 C 1.38908 * 120.01060 * 0.27226 * 13 12 11 24 24 C 1.38013 * 119.99927 * 359.45020 * 23 13 12 25 25 H 1.09000 * 109.47025 * 59.99943 * 1 2 3 26 26 H 1.09005 * 109.47231 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47123 * 300.00096 * 1 2 3 28 28 H 1.08999 * 113.61499 * 254.54165 * 5 3 2 29 29 H 1.09004 * 113.61672 * 25.36433 * 5 3 2 30 30 H 1.09000 * 113.61872 * 220.01489 * 6 5 3 31 31 H 1.09007 * 113.61078 * 89.11747 * 6 5 3 32 32 H 0.96996 * 120.00587 * 24.99355 * 9 7 3 33 33 H 1.08006 * 120.00003 * 0.02562 * 11 10 9 34 34 H 1.08002 * 119.99946 * 179.97438 * 12 11 10 35 35 H 0.97002 * 119.99635 * 0.02562 * 18 17 15 36 36 H 1.07996 * 120.00241 * 179.70779 * 23 13 12 37 37 H 1.08001 * 120.00080 * 180.29660 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7531 1.6510 1.3013 6 6 3.8220 2.3198 0.4210 7 6 3.3755 1.3719 -0.7046 8 1 3.9087 0.4213 -0.7139 9 7 3.3252 2.0089 -2.0229 10 6 4.2912 1.7011 -2.9852 11 6 4.2434 2.3047 -4.2358 12 6 5.1975 2.0011 -5.1854 13 6 6.2054 1.0917 -4.8915 14 8 7.1439 0.7926 -5.8262 15 6 7.1088 1.4963 -6.9756 16 1 6.3091 2.2000 -7.1537 17 6 8.0991 1.3166 -7.9288 18 7 9.0737 0.4596 -7.7116 19 14 8.0502 2.2912 -9.5217 20 1 9.2136 1.9186 -10.3659 21 1 8.1061 3.7432 -9.2155 22 1 6.7921 1.9869 -10.2497 23 6 6.2500 0.4833 -3.6435 24 6 5.2993 0.7910 -2.6915 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2132 2.3502 1.9398 29 1 3.1157 0.7770 1.8425 30 1 4.8420 2.1428 0.7621 31 1 3.6208 3.3707 0.2124 32 1 2.6215 2.6442 -2.2281 33 1 3.4599 3.0122 -4.4643 34 1 5.1602 2.4699 -6.1576 35 1 9.0989 -0.0467 -6.8846 36 1 7.0309 -0.2273 -3.4167 37 1 5.3367 0.3216 -1.7195 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724155259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:45 Heat of formation + Delta-G solvation = -22.675038 kcal Electronic energy + Delta-G solvation = -19058.127562 eV Core-core repulsion = 15995.063575 eV Total energy + Delta-G solvation = -3063.063986 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -39.93082 -38.86062 -37.05659 -36.04029 -33.15398 -31.85452 -30.23263 -27.45081 -27.26347 -25.13652 -24.60708 -23.99897 -22.07502 -20.82327 -19.88926 -18.18872 -17.55184 -16.73919 -16.55292 -15.69797 -15.30386 -15.03696 -14.52244 -14.05022 -13.71131 -13.64356 -13.34090 -13.18834 -12.94095 -12.53632 -12.45810 -12.10177 -11.93002 -11.62465 -11.29339 -11.16183 -10.85450 -10.79416 -10.54172 -10.23580 -10.19194 -9.75325 -9.27874 -9.18152 -8.40679 -8.21462 -6.63398 -6.44679 -3.90071 2.16079 2.52112 3.29665 3.35015 3.44669 3.51475 3.95617 4.22463 4.35181 4.40012 4.62688 4.64576 4.82637 5.02006 5.12236 5.20726 5.22849 5.31568 5.40786 5.47219 5.56749 5.60734 5.74497 5.80503 5.86683 6.00599 6.17566 6.23307 6.48431 6.81772 6.87085 7.00364 7.08282 7.37158 7.48456 7.68346 7.91781 8.18018 8.55367 9.08100 9.80230 10.81810 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043340 B = 0.003488 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.894716 B = 8025.587958 C = 8139.613046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.052 3.948 4 H 0.086 0.914 5 C -0.154 4.154 6 C -0.157 4.157 7 C 0.145 3.855 8 H 0.111 0.889 9 N -0.746 5.746 10 C 0.125 3.875 11 C -0.142 4.142 12 C -0.187 4.187 13 C 0.117 3.883 14 O -0.213 6.213 15 C -0.469 4.469 16 H 0.079 0.921 17 C 0.006 3.994 18 N -0.889 5.889 19 Si 1.095 2.905 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.152 4.152 24 C -0.144 4.144 25 H 0.041 0.959 26 H 0.084 0.916 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.390 0.610 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.281 0.719 36 H 0.116 0.884 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.997 3.584 15.287 21.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.007 4.007 4 H 0.104 0.896 5 C -0.192 4.192 6 C -0.197 4.197 7 C 0.037 3.963 8 H 0.129 0.871 9 N -0.380 5.380 10 C 0.027 3.973 11 C -0.164 4.164 12 C -0.206 4.206 13 C 0.065 3.935 14 O -0.119 6.119 15 C -0.545 4.545 16 H 0.097 0.903 17 C -0.198 4.198 18 N -0.523 5.523 19 Si 0.919 3.081 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.172 4.172 24 C -0.166 4.166 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.223 0.777 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.787 3.365 13.909 19.871 hybrid contribution -1.550 0.366 1.445 2.150 sum -15.337 3.731 15.354 22.020 Atomic orbital electron populations 1.22777 0.81394 1.02726 0.99716 1.87973 1.19492 1.27291 1.94510 1.24383 0.94483 0.85331 0.96485 0.89608 1.23267 0.98177 1.01181 0.96617 1.23314 0.99513 0.99819 0.97054 1.22573 0.94657 0.96928 0.82123 0.87111 1.44196 1.31763 1.50165 1.11842 1.17414 0.91877 0.98633 0.89357 1.20242 1.00687 1.02828 0.92607 1.20994 0.96667 1.02580 1.00390 1.19091 0.90275 0.94657 0.89502 1.83671 1.47296 1.56340 1.24557 1.22104 1.14157 1.24320 0.93948 0.90308 1.26431 0.91603 0.99063 1.02682 1.70577 1.30922 1.22547 1.28220 0.83121 0.76729 0.74841 0.73360 1.19916 1.20922 1.20905 1.20017 1.01306 1.04131 0.91766 1.20207 0.96234 1.00990 0.99133 0.94068 0.89736 0.94237 0.91032 0.89069 0.90383 0.89731 0.77652 0.87569 0.85400 0.90945 0.86642 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.37 -4.33 10.72 -35.23 -0.38 -4.71 16 3 C 0.05 0.53 4.06 -25.92 -0.11 0.42 16 4 H 0.09 0.75 7.85 -51.93 -0.41 0.34 16 5 C -0.15 -1.33 7.92 -25.92 -0.21 -1.54 16 6 C -0.16 -1.55 7.88 -25.91 -0.20 -1.75 16 7 C 0.14 1.72 3.88 -67.12 -0.26 1.46 16 8 H 0.11 1.47 6.13 -51.93 -0.32 1.15 16 9 N -0.75 -10.19 5.54 -51.33 -0.28 -10.47 16 10 C 0.12 2.20 6.66 -83.70 -0.56 1.64 16 11 C -0.14 -2.67 9.89 -39.41 -0.39 -3.06 16 12 C -0.19 -4.21 9.16 -39.42 -0.36 -4.57 16 13 C 0.12 2.91 6.65 -39.09 -0.26 2.65 16 14 O -0.21 -6.20 9.16 -0.03 0.00 -6.20 16 15 C -0.47 -13.63 9.48 30.87 0.29 -13.33 16 16 H 0.08 2.15 5.20 -52.49 -0.27 1.88 16 17 C 0.01 0.18 5.49 -17.52 -0.10 0.09 16 18 N -0.89 -27.37 13.70 55.48 0.76 -26.61 16 19 Si 1.09 24.41 29.92 -169.99 -5.09 19.32 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 C -0.15 -3.31 9.99 -39.42 -0.39 -3.70 16 24 C -0.14 -2.67 9.26 -39.40 -0.36 -3.04 16 25 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.39 4.59 8.74 -40.82 -0.36 4.23 16 33 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 34 H 0.13 2.92 5.63 -52.49 -0.30 2.62 16 35 H 0.28 8.84 7.97 -40.82 -0.33 8.51 16 36 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 37 H 0.11 1.80 6.05 -52.49 -0.32 1.48 16 LS Contribution 312.16 15.07 4.70 4.70 Total: -1.00 -32.51 312.16 -6.99 -39.49 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.89 Total: 7.86 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -1.81 Total: -23.38 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.48 Total: -37.09 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.38 Total: -10.92 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.09 Total: 19.32 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.51 -6.99 -39.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724155259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.819 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds