Wall clock time and date at job start Mon Mar 30 2020 07:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99999 * 2 1 4 4 H 1.09002 * 112.84876 * 341.19742 * 3 2 1 5 5 C 1.53776 * 113.68893 * 112.46472 * 3 2 1 6 6 C 1.53784 * 87.08053 * 139.99106 * 5 3 2 7 7 C 1.53781 * 113.61344 * 210.00501 * 3 2 1 8 8 H 1.08998 * 113.61256 * 334.56516 * 7 3 2 9 9 N 1.46495 * 113.61614 * 105.38948 * 7 3 2 10 10 C 1.39790 * 119.99979 * 204.99821 * 9 7 3 11 11 C 1.38944 * 120.00894 * 179.97438 * 10 9 7 12 12 C 1.38005 * 119.99573 * 179.97438 * 11 10 9 13 13 C 1.38894 * 120.00944 * 0.02562 * 12 11 10 14 14 O 1.35793 * 120.00058 * 179.97438 * 13 12 11 15 15 C 1.34813 * 116.99703 * 5.54803 * 14 13 12 16 16 H 1.08001 * 119.99724 * 354.94003 * 15 14 13 17 17 C 1.38621 * 119.99959 * 174.94295 * 15 14 13 18 18 N 1.31584 * 120.00274 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99920 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46930 * 179.97438 * 19 17 15 21 21 H 1.48502 * 109.46912 * 60.00019 * 19 17 15 22 22 H 1.48501 * 109.47182 * 299.99907 * 19 17 15 23 23 C 1.38908 * 120.01060 * 0.27226 * 13 12 11 24 24 C 1.38013 * 119.99927 * 359.45020 * 23 13 12 25 25 H 1.09000 * 109.47025 * 59.99943 * 1 2 3 26 26 H 1.09005 * 109.47231 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47123 * 300.00096 * 1 2 3 28 28 H 1.08999 * 113.61499 * 254.54165 * 5 3 2 29 29 H 1.09004 * 113.61672 * 25.36433 * 5 3 2 30 30 H 1.09000 * 113.61872 * 220.01489 * 6 5 3 31 31 H 1.09007 * 113.61078 * 89.11747 * 6 5 3 32 32 H 0.96996 * 120.00587 * 24.99355 * 9 7 3 33 33 H 1.08006 * 120.00003 * 0.02562 * 11 10 9 34 34 H 1.08002 * 119.99946 * 179.97438 * 12 11 10 35 35 H 0.97002 * 119.99635 * 0.02562 * 18 17 15 36 36 H 1.07996 * 120.00241 * 179.70779 * 23 13 12 37 37 H 1.08001 * 120.00080 * 180.29660 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7531 1.6510 1.3013 6 6 3.8220 2.3198 0.4210 7 6 3.3755 1.3719 -0.7046 8 1 3.9087 0.4213 -0.7139 9 7 3.3252 2.0089 -2.0229 10 6 4.2912 1.7011 -2.9852 11 6 4.2434 2.3047 -4.2358 12 6 5.1975 2.0011 -5.1854 13 6 6.2054 1.0917 -4.8915 14 8 7.1439 0.7926 -5.8262 15 6 7.1088 1.4963 -6.9756 16 1 6.3091 2.2000 -7.1537 17 6 8.0991 1.3166 -7.9288 18 7 9.0737 0.4596 -7.7116 19 14 8.0502 2.2912 -9.5217 20 1 9.2136 1.9186 -10.3659 21 1 8.1061 3.7432 -9.2155 22 1 6.7921 1.9869 -10.2497 23 6 6.2500 0.4833 -3.6435 24 6 5.2993 0.7910 -2.6915 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2132 2.3502 1.9398 29 1 3.1157 0.7770 1.8425 30 1 4.8420 2.1428 0.7621 31 1 3.6208 3.3707 0.2124 32 1 2.6215 2.6442 -2.2281 33 1 3.4599 3.0122 -4.4643 34 1 5.1602 2.4699 -6.1576 35 1 9.0989 -0.0467 -6.8846 36 1 7.0309 -0.2273 -3.4167 37 1 5.3367 0.3216 -1.7195 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724155259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:44 Heat of formation + Delta-G solvation = -44.763042 kcal Electronic energy + Delta-G solvation = -19059.085369 eV Core-core repulsion = 15995.063575 eV Total energy + Delta-G solvation = -3064.021794 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.05772 -40.38239 -38.58814 -37.07830 -34.69674 -33.75545 -31.88261 -28.97498 -27.93004 -26.96644 -25.53524 -25.17913 -23.64039 -22.45701 -20.86207 -20.02474 -18.92350 -18.13578 -17.68762 -17.04679 -16.47797 -16.05909 -15.88261 -15.59811 -15.52152 -15.27866 -14.67538 -14.38141 -14.11117 -13.88109 -13.69542 -13.40436 -13.04277 -12.68402 -12.63589 -12.47799 -12.19693 -12.06832 -12.02586 -11.91437 -11.34349 -11.18625 -10.89008 -10.52093 -10.20905 -9.86087 -8.87050 -8.01619 -6.12484 0.50359 0.84640 1.50247 1.63641 1.80770 2.41044 2.48126 2.89668 3.01566 3.18851 3.47685 3.56466 3.66430 3.86855 3.95565 4.05880 4.10340 4.35236 4.49287 4.53463 4.54406 4.56837 4.69915 4.83318 4.85427 4.92049 5.05604 5.07137 5.14982 5.20060 5.31376 5.45553 5.49058 5.75727 5.86922 6.26793 6.31165 6.55590 6.96113 6.97837 7.77015 8.59118 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043340 B = 0.003488 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.894716 B = 8025.587958 C = 8139.613046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.056 3.944 4 H 0.104 0.896 5 C -0.143 4.143 6 C -0.150 4.150 7 C 0.125 3.875 8 H 0.097 0.903 9 N -0.732 5.732 10 C 0.155 3.845 11 C -0.144 4.144 12 C -0.191 4.191 13 C 0.064 3.936 14 O -0.263 6.263 15 C -0.483 4.483 16 H 0.088 0.912 17 C -0.051 4.051 18 N -0.925 5.925 19 Si 1.145 2.855 20 H -0.275 1.275 21 H -0.261 1.261 22 H -0.260 1.260 23 C -0.155 4.155 24 C -0.146 4.146 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.404 0.596 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.258 0.742 36 H 0.114 0.886 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.006 5.394 17.145 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.321 6.321 3 C -0.002 4.002 4 H 0.122 0.878 5 C -0.181 4.181 6 C -0.190 4.190 7 C 0.019 3.981 8 H 0.114 0.886 9 N -0.365 5.365 10 C 0.055 3.945 11 C -0.167 4.167 12 C -0.210 4.210 13 C 0.015 3.985 14 O -0.172 6.172 15 C -0.559 4.559 16 H 0.106 0.894 17 C -0.245 4.245 18 N -0.561 5.561 19 Si 0.961 3.039 20 H -0.200 1.200 21 H -0.185 1.185 22 H -0.185 1.185 23 C -0.175 4.175 24 C -0.168 4.168 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.240 0.760 33 H 0.160 0.840 34 H 0.136 0.864 35 H 0.066 0.934 36 H 0.132 0.868 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.886 5.194 15.861 23.742 hybrid contribution -0.904 -0.197 1.240 1.547 sum -17.789 4.996 17.100 25.176 Atomic orbital electron populations 1.22948 0.79829 1.03600 1.00760 1.87938 1.21312 1.28185 1.94665 1.24412 0.93781 0.85440 0.96613 0.87793 1.23201 0.97379 1.01331 0.96184 1.23267 0.99935 0.99808 0.95962 1.22889 0.96768 0.96932 0.81514 0.88556 1.44298 1.30673 1.49815 1.11671 1.17559 0.91341 0.96121 0.89511 1.20513 1.00569 1.03393 0.92190 1.21072 0.96984 1.02015 1.00960 1.19613 0.91226 0.97419 0.90284 1.83636 1.49737 1.58222 1.25573 1.22534 1.14510 1.24361 0.94487 0.89418 1.28351 0.90784 0.99242 1.06158 1.70719 1.32941 1.24909 1.27512 0.82583 0.77582 0.74480 0.69226 1.19954 1.18526 1.18510 1.20237 1.02093 1.03739 0.91426 1.20479 0.95595 1.01208 0.99551 0.93623 0.89140 0.92525 0.88884 0.89308 0.90552 0.88821 0.75980 0.83989 0.86369 0.93378 0.86801 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.85 113.37 1.23 1.56 16 2 O -0.40 -8.11 10.72 -148.98 -1.60 -9.71 16 3 C 0.06 0.92 4.06 31.12 0.13 1.05 16 4 H 0.10 1.32 7.85 -2.39 -0.02 1.30 16 5 C -0.14 -1.91 7.92 31.12 0.25 -1.66 16 6 C -0.15 -2.40 7.88 31.12 0.25 -2.15 16 7 C 0.13 2.56 3.88 45.52 0.18 2.73 16 8 H 0.10 2.29 6.13 -2.39 -0.01 2.27 16 9 N -0.73 -17.15 5.54 -316.31 -1.75 -18.90 16 10 C 0.16 5.05 6.66 38.21 0.25 5.31 16 11 C -0.14 -5.13 9.89 22.38 0.22 -4.91 16 12 C -0.19 -8.66 9.16 22.37 0.20 -8.45 16 13 C 0.06 3.30 6.65 22.59 0.15 3.45 16 14 O -0.26 -16.29 9.16 -23.04 -0.21 -16.51 16 15 C -0.48 -29.34 9.48 67.91 0.64 -28.69 16 16 H 0.09 4.95 5.20 -2.91 -0.02 4.94 16 17 C -0.05 -3.01 5.49 84.82 0.47 -2.55 16 18 N -0.92 -59.97 13.70 21.61 0.30 -59.68 16 19 Si 1.15 49.73 29.92 68.60 2.05 51.78 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 C -0.16 -6.89 9.99 22.38 0.22 -6.66 16 24 C -0.15 -5.22 9.26 22.39 0.21 -5.02 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.40 7.59 8.74 -92.71 -0.81 6.78 16 33 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 34 H 0.12 5.49 5.63 -2.91 -0.02 5.48 16 35 H 0.26 17.46 7.97 -92.71 -0.74 16.72 16 36 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 37 H 0.14 4.20 6.05 -2.91 -0.02 4.18 16 Total: -1.00 -75.22 312.16 3.49 -71.73 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.31 Total: 27.27 kcal Atomic # 6 Polarization: -50.39 SS G_CDS: 4.40 Total: -45.99 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -1.45 Total: -78.57 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -1.81 Total: -26.21 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.05 Total: 51.78 kcal Total: -75.22 3.49 -71.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724155259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.964 kcal (2) G-P(sol) polarization free energy of solvation -75.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds