Wall clock time and date at job start Mon Mar 30 2020 07:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00024 * 2 1 4 4 H 1.09002 * 112.84950 * 21.68977 * 3 2 1 5 5 C 1.53782 * 113.61104 * 250.49462 * 3 2 1 6 6 C 1.53785 * 87.17012 * 219.88921 * 5 3 2 7 7 C 1.53770 * 113.69074 * 152.95691 * 3 2 1 8 8 H 1.08999 * 113.61852 * 25.44325 * 7 3 2 9 9 N 1.46502 * 113.61675 * 254.62311 * 7 3 2 10 10 C 1.39678 * 120.00387 * 155.00019 * 9 7 3 11 11 C 1.39006 * 120.03455 * 0.02562 * 10 9 7 12 12 C 1.38155 * 120.05946 * 180.02562 * 11 10 9 13 13 C 1.38170 * 120.14032 * 0.02562 * 12 11 10 14 14 C 1.38908 * 120.08258 * 359.95699 * 13 12 11 15 15 O 1.35756 * 120.03623 * 180.02562 * 14 13 12 16 16 C 1.34826 * 117.00053 * 174.48361 * 15 14 13 17 17 H 1.07995 * 120.00706 * 5.07953 * 16 15 14 18 18 C 1.38656 * 119.99894 * 185.07700 * 16 15 14 19 19 N 1.31562 * 119.99879 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00328 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47304 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47341 * 120.00069 * 20 18 16 23 23 H 1.48503 * 109.47344 * 240.00032 * 20 18 16 24 24 C 1.38740 * 120.04184 * 179.72776 * 10 9 7 25 25 H 1.09002 * 109.47366 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47683 * 300.00142 * 1 2 3 27 27 H 1.09002 * 109.47537 * 60.00089 * 1 2 3 28 28 H 1.09001 * 113.61763 * 334.48044 * 5 3 2 29 29 H 1.08999 * 113.61493 * 105.30209 * 5 3 2 30 30 H 1.08997 * 113.61270 * 140.02013 * 6 5 3 31 31 H 1.08994 * 113.61598 * 270.92662 * 6 5 3 32 32 H 0.97000 * 120.00072 * 334.99809 * 9 7 3 33 33 H 1.08002 * 119.97307 * 359.97309 * 11 10 9 34 34 H 1.07997 * 119.92912 * 179.97438 * 12 11 10 35 35 H 1.08000 * 119.95910 * 179.97438 * 13 12 11 36 36 H 0.96998 * 120.00122 * 179.97438 * 19 18 16 37 37 H 1.08003 * 120.07502 * 359.97427 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3297 2.0718 0.3712 5 6 2.6905 1.6768 -1.3282 6 6 3.8004 2.3314 -0.4888 7 6 3.4072 1.3598 0.6402 8 1 3.9411 0.4102 0.6046 9 7 3.4191 1.9694 1.9723 10 6 4.4291 1.6439 2.8805 11 6 5.4238 0.7419 2.5209 12 6 6.4228 0.4191 3.4190 13 6 6.4363 0.9909 4.6768 14 6 5.4455 1.8932 5.0421 15 8 5.4599 2.4549 6.2779 16 6 4.5382 3.4063 6.5287 17 1 3.7807 3.6319 5.7927 18 6 4.5627 4.0953 7.7318 19 7 5.4856 3.8209 8.6283 20 14 3.2853 5.4130 8.0797 21 1 2.3649 5.5288 6.9199 22 1 2.5100 5.0434 9.2911 23 1 3.9648 6.7141 8.3047 24 6 4.4443 2.2250 4.1402 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.0285 0.8138 -1.9020 29 1 2.1202 2.3865 -1.9275 30 1 4.8027 2.1627 -0.8826 31 1 3.6085 3.3776 -0.2510 32 1 2.7255 2.5992 2.2236 33 1 5.4153 0.2923 1.5390 34 1 7.1943 -0.2823 3.1376 35 1 7.2184 0.7361 5.3767 36 1 5.5030 4.3031 9.4697 37 1 3.6756 2.9301 4.4203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724160059.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:53 Heat of formation + Delta-G solvation = -19.569230 kcal Electronic energy + Delta-G solvation = -19250.107824 eV Core-core repulsion = 16187.178516 eV Total energy + Delta-G solvation = -3062.929308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -39.88229 -38.77423 -36.91841 -35.95732 -33.35706 -32.11608 -29.09922 -28.07559 -27.22490 -25.23401 -24.67761 -24.35760 -21.77709 -20.73895 -19.79598 -17.92325 -17.57211 -16.76117 -16.24483 -15.38718 -15.19461 -14.93068 -14.71955 -14.16982 -13.82835 -13.64022 -13.29239 -13.01773 -12.83696 -12.62477 -12.34233 -12.00937 -11.70677 -11.59564 -11.39559 -11.19175 -10.88696 -10.72298 -10.63556 -10.44065 -10.31623 -9.73260 -9.36919 -9.31861 -8.73092 -7.32466 -6.73746 -6.38463 -3.97517 2.42274 2.59813 3.15134 3.15913 3.21183 3.47712 3.97337 4.01894 4.39527 4.44040 4.68528 4.71046 4.86681 5.08413 5.17965 5.19031 5.27480 5.39248 5.46322 5.50350 5.60177 5.75038 5.83548 5.90505 6.00941 6.10217 6.32068 6.41114 6.67938 6.69501 7.03096 7.08503 7.19013 7.43664 7.52580 7.70365 8.04547 8.08055 8.22877 9.07807 9.81150 10.80118 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020839 B = 0.004612 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.295241 B = 6070.126780 C = 6856.410087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.052 3.948 4 H 0.087 0.913 5 C -0.155 4.155 6 C -0.156 4.156 7 C 0.143 3.857 8 H 0.114 0.886 9 N -0.742 5.742 10 C 0.248 3.752 11 C -0.277 4.277 12 C -0.040 4.040 13 C -0.236 4.236 14 C 0.189 3.811 15 O -0.179 6.179 16 C -0.388 4.388 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.276 1.276 24 C -0.301 4.301 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.393 0.607 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.268 0.732 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.531 -3.387 -17.424 19.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.007 4.007 4 H 0.105 0.895 5 C -0.193 4.193 6 C -0.195 4.195 7 C 0.036 3.964 8 H 0.132 0.868 9 N -0.372 5.372 10 C 0.148 3.852 11 C -0.300 4.300 12 C -0.059 4.059 13 C -0.257 4.257 14 C 0.135 3.865 15 O -0.083 6.083 16 C -0.465 4.465 17 H 0.108 0.892 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.325 4.325 25 H 0.103 0.897 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.228 0.772 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.173 -3.619 -17.112 18.904 hybrid contribution -1.259 1.190 0.229 1.747 sum -8.432 -2.430 -16.883 19.027 Atomic orbital electron populations 1.22776 0.81351 1.02704 0.99804 1.87961 1.19526 1.27251 1.94534 1.24366 0.94519 0.85385 0.96429 0.89520 1.23278 0.98238 1.01139 0.96660 1.23336 0.99287 0.99823 0.97098 1.22675 0.94571 0.97300 0.81842 0.86793 1.44510 1.29797 1.50136 1.12711 1.17479 0.87439 0.92069 0.88232 1.20114 1.00391 1.08413 1.01089 1.20382 0.96335 0.96731 0.92451 1.20040 1.01989 1.05612 0.98036 1.19070 0.91733 0.90797 0.84921 1.83988 1.51910 1.47850 1.24504 1.21338 1.08294 1.13776 1.03050 0.89191 1.25266 0.98064 0.98278 0.94992 1.70053 1.32471 1.40235 1.07258 0.85670 0.79423 0.79693 0.78725 1.19298 1.20229 1.20208 1.20506 1.05746 1.11696 0.94532 0.89741 0.93977 0.94241 0.89089 0.91006 0.90307 0.89637 0.77236 0.87733 0.87172 0.86914 0.92199 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.86 101.05 1.10 1.37 16 2 O -0.37 -4.55 10.72 -35.23 -0.38 -4.93 16 3 C 0.05 0.57 4.04 -25.92 -0.10 0.46 16 4 H 0.09 0.86 7.87 -51.93 -0.41 0.45 16 5 C -0.15 -1.41 7.90 -25.92 -0.20 -1.62 16 6 C -0.16 -1.63 7.90 -25.77 -0.20 -1.83 16 7 C 0.14 1.82 3.88 -66.98 -0.26 1.56 16 8 H 0.11 1.55 6.13 -51.93 -0.32 1.23 16 9 N -0.74 -11.35 5.54 -51.26 -0.28 -11.63 16 10 C 0.25 4.77 6.65 -83.81 -0.56 4.22 16 11 C -0.28 -5.10 9.26 -39.33 -0.36 -5.47 16 12 C -0.04 -0.76 10.03 -39.64 -0.40 -1.16 16 13 C -0.24 -5.26 9.99 -39.36 -0.39 -5.65 16 14 C 0.19 4.76 6.65 -39.14 -0.26 4.50 16 15 O -0.18 -5.27 9.76 0.04 0.00 -5.27 16 16 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 17 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 18 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 19 N -0.86 -25.80 13.67 55.48 0.76 -25.04 16 20 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 C -0.30 -6.79 9.01 -39.20 -0.35 -7.14 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.39 5.55 8.74 -40.82 -0.36 5.19 16 33 H 0.10 1.67 6.05 -52.49 -0.32 1.35 16 34 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 36 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.12 2.79 5.63 -52.48 -0.30 2.49 16 LS Contribution 312.75 15.07 4.71 4.71 Total: -1.00 -31.98 312.75 -6.93 -38.90 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -4.91 Total: 8.03 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -1.80 Total: -20.60 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.47 Total: -36.68 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.38 Total: -10.20 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.98 -6.93 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724160059.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.334 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds