Wall clock time and date at job start Mon Mar 30 2020 07:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00024 * 2 1 4 4 H 1.09002 * 112.84950 * 21.68977 * 3 2 1 5 5 C 1.53782 * 113.61104 * 250.49462 * 3 2 1 6 6 C 1.53785 * 87.17012 * 219.88921 * 5 3 2 7 7 C 1.53770 * 113.69074 * 152.95691 * 3 2 1 8 8 H 1.08999 * 113.61852 * 25.44325 * 7 3 2 9 9 N 1.46502 * 113.61675 * 254.62311 * 7 3 2 10 10 C 1.39678 * 120.00387 * 155.00019 * 9 7 3 11 11 C 1.39006 * 120.03455 * 0.02562 * 10 9 7 12 12 C 1.38155 * 120.05946 * 180.02562 * 11 10 9 13 13 C 1.38170 * 120.14032 * 0.02562 * 12 11 10 14 14 C 1.38908 * 120.08258 * 359.95699 * 13 12 11 15 15 O 1.35756 * 120.03623 * 180.02562 * 14 13 12 16 16 C 1.34826 * 117.00053 * 174.48361 * 15 14 13 17 17 H 1.07995 * 120.00706 * 5.07953 * 16 15 14 18 18 C 1.38656 * 119.99894 * 185.07700 * 16 15 14 19 19 N 1.31562 * 119.99879 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00328 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47304 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47341 * 120.00069 * 20 18 16 23 23 H 1.48503 * 109.47344 * 240.00032 * 20 18 16 24 24 C 1.38740 * 120.04184 * 179.72776 * 10 9 7 25 25 H 1.09002 * 109.47366 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47683 * 300.00142 * 1 2 3 27 27 H 1.09002 * 109.47537 * 60.00089 * 1 2 3 28 28 H 1.09001 * 113.61763 * 334.48044 * 5 3 2 29 29 H 1.08999 * 113.61493 * 105.30209 * 5 3 2 30 30 H 1.08997 * 113.61270 * 140.02013 * 6 5 3 31 31 H 1.08994 * 113.61598 * 270.92662 * 6 5 3 32 32 H 0.97000 * 120.00072 * 334.99809 * 9 7 3 33 33 H 1.08002 * 119.97307 * 359.97309 * 11 10 9 34 34 H 1.07997 * 119.92912 * 179.97438 * 12 11 10 35 35 H 1.08000 * 119.95910 * 179.97438 * 13 12 11 36 36 H 0.96998 * 120.00122 * 179.97438 * 19 18 16 37 37 H 1.08003 * 120.07502 * 359.97427 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3297 2.0718 0.3712 5 6 2.6905 1.6768 -1.3282 6 6 3.8004 2.3314 -0.4888 7 6 3.4072 1.3598 0.6402 8 1 3.9411 0.4102 0.6046 9 7 3.4191 1.9694 1.9723 10 6 4.4291 1.6439 2.8805 11 6 5.4238 0.7419 2.5209 12 6 6.4228 0.4191 3.4190 13 6 6.4363 0.9909 4.6768 14 6 5.4455 1.8932 5.0421 15 8 5.4599 2.4549 6.2779 16 6 4.5382 3.4063 6.5287 17 1 3.7807 3.6319 5.7927 18 6 4.5627 4.0953 7.7318 19 7 5.4856 3.8209 8.6283 20 14 3.2853 5.4130 8.0797 21 1 2.3649 5.5288 6.9199 22 1 2.5100 5.0434 9.2911 23 1 3.9648 6.7141 8.3047 24 6 4.4443 2.2250 4.1402 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.0285 0.8138 -1.9020 29 1 2.1202 2.3865 -1.9275 30 1 4.8027 2.1627 -0.8826 31 1 3.6085 3.3776 -0.2510 32 1 2.7255 2.5992 2.2236 33 1 5.4153 0.2923 1.5390 34 1 7.1943 -0.2823 3.1376 35 1 7.2184 0.7361 5.3767 36 1 5.5030 4.3031 9.4697 37 1 3.6756 2.9301 4.4203 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724160059.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:51 Heat of formation + Delta-G solvation = -41.182615 kcal Electronic energy + Delta-G solvation = -19251.045051 eV Core-core repulsion = 16187.178516 eV Total energy + Delta-G solvation = -3063.866535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -41.03273 -40.32760 -38.44393 -37.07615 -34.79135 -34.09361 -30.75870 -29.66620 -27.94467 -27.25637 -25.64644 -25.27827 -23.44080 -22.25844 -20.85439 -19.71242 -19.11102 -17.85976 -17.51381 -16.76602 -16.57336 -16.07916 -15.88614 -15.86177 -15.49895 -15.36527 -14.45715 -14.34235 -14.17103 -13.87530 -13.70077 -13.48090 -13.04785 -12.76794 -12.59455 -12.47565 -12.30102 -12.13841 -12.05415 -11.97588 -11.34996 -11.26591 -10.94957 -10.62907 -10.47250 -9.11339 -8.45155 -8.24015 -6.13538 0.76223 0.90848 1.34145 1.43894 1.52686 2.18470 2.42984 2.88936 2.98045 3.25309 3.55713 3.59137 3.65380 3.87371 3.94409 4.20870 4.30294 4.42816 4.53453 4.55679 4.59066 4.61786 4.77837 4.82654 4.91534 5.01922 5.06623 5.07736 5.13399 5.16796 5.31926 5.46972 5.75443 5.80777 6.03355 6.11177 6.26690 6.59088 6.84336 7.00103 7.83464 8.78778 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020839 B = 0.004612 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.295241 B = 6070.126780 C = 6856.410087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.053 3.947 4 H 0.096 0.904 5 C -0.140 4.140 6 C -0.149 4.149 7 C 0.126 3.874 8 H 0.108 0.892 9 N -0.733 5.733 10 C 0.256 3.744 11 C -0.265 4.265 12 C -0.026 4.026 13 C -0.261 4.261 14 C 0.153 3.847 15 O -0.233 6.233 16 C -0.411 4.411 17 H 0.099 0.901 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.020 2.980 21 H -0.253 1.253 22 H -0.268 1.268 23 H -0.268 1.268 24 C -0.315 4.315 25 H 0.093 0.907 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.399 0.601 33 H 0.140 0.860 34 H 0.152 0.848 35 H 0.107 0.893 36 H 0.272 0.728 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.037 -3.429 -20.713 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.006 4.006 4 H 0.114 0.886 5 C -0.178 4.178 6 C -0.188 4.188 7 C 0.020 3.980 8 H 0.126 0.874 9 N -0.361 5.361 10 C 0.152 3.848 11 C -0.287 4.287 12 C -0.045 4.045 13 C -0.282 4.282 14 C 0.101 3.899 15 O -0.139 6.139 16 C -0.487 4.487 17 H 0.116 0.884 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.839 3.161 21 H -0.176 1.176 22 H -0.193 1.193 23 H -0.193 1.193 24 C -0.339 4.339 25 H 0.112 0.888 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.234 0.766 33 H 0.157 0.843 34 H 0.170 0.830 35 H 0.125 0.875 36 H 0.081 0.919 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.709 -3.685 -20.490 22.567 hybrid contribution -0.792 1.005 0.947 1.592 sum -9.500 -2.679 -19.543 21.894 Atomic orbital electron populations 1.22942 0.79879 1.03692 1.00626 1.87920 1.21226 1.27933 1.94708 1.24410 0.93703 0.85395 0.97117 0.88584 1.23202 0.97266 1.01433 0.95878 1.23288 1.00211 0.99356 0.95966 1.23047 0.96623 0.97613 0.80696 0.87424 1.44661 1.28588 1.49736 1.13123 1.17573 0.88408 0.91240 0.87573 1.20585 0.99031 1.06886 1.02243 1.20827 0.97030 0.95968 0.90633 1.20265 1.01828 1.06334 0.99778 1.19637 0.93647 0.91935 0.84649 1.83950 1.53348 1.49539 1.27051 1.21831 1.08764 1.14250 1.03848 0.88362 1.26595 1.00537 1.00695 0.94311 1.70200 1.35268 1.42438 1.08153 0.84521 0.76442 0.76074 0.79066 1.17590 1.19322 1.19268 1.20509 1.05231 1.12375 0.95802 0.88819 0.94060 0.92482 0.88655 0.89041 0.89732 0.89479 0.76605 0.84259 0.83007 0.87482 0.91892 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.86 113.37 1.23 1.61 16 2 O -0.40 -8.61 10.72 -148.98 -1.60 -10.21 16 3 C 0.05 0.98 4.04 31.12 0.13 1.10 16 4 H 0.10 1.59 7.87 -2.39 -0.02 1.57 16 5 C -0.14 -2.00 7.90 31.12 0.25 -1.75 16 6 C -0.15 -2.58 7.90 31.22 0.25 -2.33 16 7 C 0.13 2.81 3.88 45.61 0.18 2.99 16 8 H 0.11 2.56 6.13 -2.39 -0.01 2.54 16 9 N -0.73 -20.88 5.54 -316.10 -1.75 -22.63 16 10 C 0.26 9.48 6.65 38.20 0.25 9.73 16 11 C -0.27 -9.00 9.26 22.43 0.21 -8.79 16 12 C -0.03 -0.93 10.03 22.23 0.22 -0.71 16 13 C -0.26 -11.88 9.99 22.41 0.22 -11.66 16 14 C 0.15 8.03 6.65 22.56 0.15 8.18 16 15 O -0.23 -14.58 9.76 -22.76 -0.22 -14.80 16 16 C -0.41 -24.67 9.49 67.92 0.64 -24.03 16 17 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 18 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 19 N -0.92 -57.83 13.67 21.61 0.30 -57.53 16 20 Si 1.02 43.70 29.55 68.60 2.03 45.73 16 21 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 C -0.32 -14.51 9.01 22.52 0.20 -14.31 16 25 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.40 10.57 8.74 -92.71 -0.81 9.76 16 33 H 0.14 3.82 6.05 -2.91 -0.02 3.80 16 34 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 35 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 36 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 37 H 0.11 5.32 5.63 -2.91 -0.02 5.31 16 Total: -1.00 -73.84 312.75 3.43 -70.42 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 0.27 Total: 29.95 kcal Atomic # 6 Polarization: -45.33 SS G_CDS: 4.40 Total: -40.93 kcal Atomic # 7 Polarization: -78.71 SS G_CDS: -1.45 Total: -80.16 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -1.82 Total: -25.00 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -73.84 3.43 -70.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724160059.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.233 kcal (2) G-P(sol) polarization free energy of solvation -73.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds