Wall clock time and date at job start Mon Mar 30 2020 07:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00097 * 2 1 4 4 H 1.09006 * 112.84700 * 338.31142 * 3 2 1 5 5 C 1.53784 * 113.61443 * 109.50632 * 3 2 1 6 6 C 1.53784 * 87.07832 * 139.98456 * 5 3 2 7 7 C 1.53775 * 113.61581 * 207.00671 * 3 2 1 8 8 H 1.08999 * 113.61371 * 334.56697 * 7 3 2 9 9 N 1.46500 * 113.61920 * 105.46903 * 7 3 2 10 10 C 1.39668 * 120.00571 * 205.00096 * 9 7 3 11 11 C 1.39004 * 120.03767 * 359.71975 * 10 9 7 12 12 C 1.38148 * 120.06099 * 179.76770 * 11 10 9 13 13 C 1.38166 * 120.14357 * 0.51272 * 12 11 10 14 14 C 1.38916 * 120.07973 * 359.74468 * 13 12 11 15 15 O 1.35750 * 120.03449 * 180.02562 * 14 13 12 16 16 C 1.34833 * 117.00201 * 174.43910 * 15 14 13 17 17 H 1.07992 * 119.99613 * 5.05329 * 16 15 14 18 18 C 1.38651 * 119.99629 * 185.05255 * 16 15 14 19 19 N 1.31550 * 120.00428 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99587 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46959 * 89.99934 * 20 18 16 22 22 H 1.48500 * 109.47082 * 210.00423 * 20 18 16 23 23 H 1.48497 * 109.47108 * 330.00364 * 20 18 16 24 24 C 1.38747 * 120.04168 * 180.02562 * 10 9 7 25 25 H 1.09005 * 109.46915 * 299.99314 * 1 2 3 26 26 H 1.09005 * 109.47242 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47469 * 59.99714 * 1 2 3 28 28 H 1.08999 * 113.61264 * 254.53180 * 5 3 2 29 29 H 1.09005 * 113.61173 * 25.43375 * 5 3 2 30 30 H 1.08993 * 113.61208 * 89.12112 * 6 5 3 31 31 H 1.09001 * 113.60775 * 220.01891 * 6 5 3 32 32 H 0.97003 * 119.99300 * 25.00137 * 9 7 3 33 33 H 1.08000 * 119.96701 * 0.02562 * 11 10 9 34 34 H 1.08003 * 119.92795 * 180.23246 * 12 11 10 35 35 H 1.08007 * 119.96124 * 179.76666 * 13 12 11 36 36 H 0.97002 * 120.00166 * 180.02562 * 19 18 16 37 37 H 1.08003 * 120.07174 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3297 2.0717 -0.3712 5 6 2.6906 1.6768 1.3282 6 6 3.8010 2.3278 0.4866 7 6 3.4076 1.3576 -0.6398 8 1 3.9402 0.4073 -0.6034 9 7 3.4210 1.9681 -1.9715 10 6 4.4306 1.6413 -2.8795 11 6 5.4265 0.7412 -2.5185 12 6 6.4227 0.4139 -3.4180 13 6 6.4386 0.9877 -4.6748 14 6 5.4493 1.8919 -5.0399 15 8 5.4655 2.4547 -6.2751 16 6 4.4159 3.2334 -6.6069 17 1 3.6528 3.4517 -5.8746 18 6 4.3166 3.7538 -7.8882 19 7 5.2460 3.4875 -8.7803 20 14 2.8621 4.8321 -8.3480 21 1 3.1896 6.2524 -8.0643 22 1 2.5648 4.6719 -9.7941 23 1 1.6756 4.4290 -7.5512 24 6 4.4444 2.2194 -4.1407 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 2.1217 2.3887 1.9261 29 1 3.0272 0.8137 1.9026 30 1 3.6111 3.3742 0.2478 31 1 4.8033 2.1574 0.8795 32 1 2.7286 2.5993 -2.2225 33 1 5.4191 0.2942 -1.5354 34 1 7.1933 -0.2885 -3.1365 35 1 7.2210 0.7326 -5.3743 36 1 5.1766 3.8520 -9.6766 37 1 3.6743 2.9225 -4.4222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724160071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:04 Heat of formation + Delta-G solvation = -19.445855 kcal Electronic energy + Delta-G solvation = -19254.193932 eV Core-core repulsion = 16191.269974 eV Total energy + Delta-G solvation = -3062.923958 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.89458 -38.77430 -36.91855 -35.96088 -33.35692 -32.11670 -29.09832 -28.07435 -27.22256 -25.23153 -24.68764 -24.35195 -21.77593 -20.73790 -19.79443 -17.92226 -17.57083 -16.75974 -16.24427 -15.38534 -15.19416 -14.93076 -14.72011 -14.17291 -13.83233 -13.63128 -13.30150 -13.00508 -12.84074 -12.62828 -12.35057 -11.99962 -11.69509 -11.60189 -11.39385 -11.18407 -10.87904 -10.73185 -10.63673 -10.45149 -10.31626 -9.73592 -9.35810 -9.32938 -8.72770 -7.32391 -6.73677 -6.38165 -3.97327 2.42414 2.60002 3.15252 3.16279 3.20625 3.48032 3.97487 4.02071 4.39746 4.43770 4.68805 4.71077 4.86931 5.08535 5.18306 5.19487 5.27493 5.39024 5.46709 5.50580 5.60068 5.75071 5.83419 5.90571 6.00927 6.10166 6.32133 6.41142 6.68037 6.69548 7.03326 7.08599 7.18796 7.43747 7.52596 7.70466 8.04587 8.08167 8.22948 9.07986 9.81210 10.80329 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.004664 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.363802 B = 6001.939295 C = 6848.360609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.052 3.948 4 H 0.087 0.913 5 C -0.155 4.155 6 C -0.156 4.156 7 C 0.144 3.856 8 H 0.114 0.886 9 N -0.742 5.742 10 C 0.248 3.752 11 C -0.278 4.278 12 C -0.040 4.040 13 C -0.236 4.236 14 C 0.189 3.811 15 O -0.179 6.179 16 C -0.389 4.389 17 H 0.090 0.910 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.939 3.061 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.269 1.269 24 C -0.301 4.301 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.394 0.606 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.269 0.731 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.277 -3.021 17.568 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.007 4.007 4 H 0.105 0.895 5 C -0.193 4.193 6 C -0.195 4.195 7 C 0.036 3.964 8 H 0.132 0.868 9 N -0.372 5.372 10 C 0.148 3.852 11 C -0.300 4.300 12 C -0.059 4.059 13 C -0.257 4.257 14 C 0.135 3.865 15 O -0.082 6.082 16 C -0.465 4.465 17 H 0.107 0.893 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.764 3.236 21 H -0.200 1.200 22 H -0.203 1.203 23 H -0.194 1.194 24 C -0.325 4.325 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.228 0.772 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.915 -3.252 17.252 18.869 hybrid contribution -1.352 1.070 -0.280 1.747 sum -8.267 -2.182 16.972 19.004 Atomic orbital electron populations 1.22776 0.81352 1.02710 0.99801 1.87963 1.19529 1.27249 1.94533 1.24377 0.94512 0.85399 0.96423 0.89513 1.23283 0.98229 1.01145 0.96663 1.23294 0.99294 0.99848 0.97111 1.22623 0.94576 0.97319 0.81858 0.86786 1.44510 1.29913 1.49973 1.12761 1.17478 0.87409 0.92139 0.88188 1.20111 1.00390 1.08494 1.01020 1.20380 0.96337 0.96796 0.92383 1.20042 1.02763 1.04650 0.98227 1.19068 0.92075 0.89760 0.85615 1.83987 1.42401 1.56013 1.25830 1.21287 1.01045 1.26842 0.97332 0.89251 1.25258 0.98602 0.98092 0.94605 1.70038 1.32881 1.42666 1.04442 0.85743 0.80036 0.79561 0.78226 1.19982 1.20300 1.19376 1.20503 1.05948 1.11695 0.94344 0.94236 0.89740 0.93978 0.90992 0.89080 0.89636 0.90325 0.77235 0.87739 0.87176 0.86915 0.92144 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.86 101.05 1.10 1.37 16 2 O -0.37 -4.57 10.71 -35.23 -0.38 -4.95 16 3 C 0.05 0.57 4.04 -25.92 -0.10 0.46 16 4 H 0.09 0.86 7.87 -51.93 -0.41 0.45 16 5 C -0.15 -1.41 7.91 -25.92 -0.21 -1.62 16 6 C -0.16 -1.62 7.88 -25.92 -0.20 -1.83 16 7 C 0.14 1.82 3.87 -67.12 -0.26 1.56 16 8 H 0.11 1.55 6.14 -51.93 -0.32 1.24 16 9 N -0.74 -11.34 5.53 -51.40 -0.28 -11.63 16 10 C 0.25 4.77 6.65 -83.82 -0.56 4.22 16 11 C -0.28 -5.11 9.26 -39.33 -0.36 -5.47 16 12 C -0.04 -0.76 10.03 -39.64 -0.40 -1.16 16 13 C -0.24 -5.26 9.99 -39.36 -0.39 -5.65 16 14 C 0.19 4.76 6.64 -39.14 -0.26 4.50 16 15 O -0.18 -5.26 9.76 0.04 0.00 -5.26 16 16 C -0.39 -11.10 9.49 30.88 0.29 -10.81 16 17 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 20 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 C -0.30 -6.79 9.01 -39.20 -0.35 -7.14 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.39 5.54 8.74 -40.82 -0.36 5.18 16 33 H 0.10 1.67 6.05 -52.49 -0.32 1.35 16 34 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 35 H 0.11 2.43 8.06 -52.48 -0.42 2.01 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.12 2.78 5.64 -52.48 -0.30 2.48 16 LS Contribution 312.74 15.07 4.71 4.71 Total: -1.00 -31.98 312.74 -6.93 -38.91 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -4.91 Total: 8.05 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -1.81 Total: -20.59 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.47 Total: -36.69 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.38 Total: -10.21 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.98 -6.93 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724160071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.467 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds