Wall clock time and date at job start Mon Mar 30 2020 07:17:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42897 * 114.00097 * 2 1
4 4 H 1.09006 * 112.84700 * 338.31142 * 3 2 1
5 5 C 1.53784 * 113.61443 * 109.50632 * 3 2 1
6 6 C 1.53784 * 87.07832 * 139.98456 * 5 3 2
7 7 C 1.53775 * 113.61581 * 207.00671 * 3 2 1
8 8 H 1.08999 * 113.61371 * 334.56697 * 7 3 2
9 9 N 1.46500 * 113.61920 * 105.46903 * 7 3 2
10 10 C 1.39668 * 120.00571 * 205.00096 * 9 7 3
11 11 C 1.39004 * 120.03767 * 359.71975 * 10 9 7
12 12 C 1.38148 * 120.06099 * 179.76770 * 11 10 9
13 13 C 1.38166 * 120.14357 * 0.51272 * 12 11 10
14 14 C 1.38916 * 120.07973 * 359.74468 * 13 12 11
15 15 O 1.35750 * 120.03449 * 180.02562 * 14 13 12
16 16 C 1.34833 * 117.00201 * 174.43910 * 15 14 13
17 17 H 1.07992 * 119.99613 * 5.05329 * 16 15 14
18 18 C 1.38651 * 119.99629 * 185.05255 * 16 15 14
19 19 N 1.31550 * 120.00428 * 0.02562 * 18 16 15
20 20 Si 1.86804 * 119.99587 * 179.97438 * 18 16 15
21 21 H 1.48497 * 109.46959 * 89.99934 * 20 18 16
22 22 H 1.48500 * 109.47082 * 210.00423 * 20 18 16
23 23 H 1.48497 * 109.47108 * 330.00364 * 20 18 16
24 24 C 1.38747 * 120.04168 * 180.02562 * 10 9 7
25 25 H 1.09005 * 109.46915 * 299.99314 * 1 2 3
26 26 H 1.09005 * 109.47242 * 179.97438 * 1 2 3
27 27 H 1.08994 * 109.47469 * 59.99714 * 1 2 3
28 28 H 1.08999 * 113.61264 * 254.53180 * 5 3 2
29 29 H 1.09005 * 113.61173 * 25.43375 * 5 3 2
30 30 H 1.08993 * 113.61208 * 89.12112 * 6 5 3
31 31 H 1.09001 * 113.60775 * 220.01891 * 6 5 3
32 32 H 0.97003 * 119.99300 * 25.00137 * 9 7 3
33 33 H 1.08000 * 119.96701 * 0.02562 * 11 10 9
34 34 H 1.08003 * 119.92795 * 180.23246 * 12 11 10
35 35 H 1.08007 * 119.96124 * 179.76666 * 13 12 11
36 36 H 0.97002 * 120.00166 * 180.02562 * 19 18 16
37 37 H 1.08003 * 120.07174 * 359.97438 * 24 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 1 1.3297 2.0717 -0.3712
5 6 2.6906 1.6768 1.3282
6 6 3.8010 2.3278 0.4866
7 6 3.4076 1.3576 -0.6398
8 1 3.9402 0.4073 -0.6034
9 7 3.4210 1.9681 -1.9715
10 6 4.4306 1.6413 -2.8795
11 6 5.4265 0.7412 -2.5185
12 6 6.4227 0.4139 -3.4180
13 6 6.4386 0.9877 -4.6748
14 6 5.4493 1.8919 -5.0399
15 8 5.4655 2.4547 -6.2751
16 6 4.4159 3.2334 -6.6069
17 1 3.6528 3.4517 -5.8746
18 6 4.3166 3.7538 -7.8882
19 7 5.2460 3.4875 -8.7803
20 14 2.8621 4.8321 -8.3480
21 1 3.1896 6.2524 -8.0643
22 1 2.5648 4.6719 -9.7941
23 1 1.6756 4.4290 -7.5512
24 6 4.4444 2.2194 -4.1407
25 1 -0.3633 0.5138 0.8901
26 1 -0.3634 -1.0277 -0.0005
27 1 -0.3634 0.5138 -0.8899
28 1 2.1217 2.3887 1.9261
29 1 3.0272 0.8137 1.9026
30 1 3.6111 3.3742 0.2478
31 1 4.8033 2.1574 0.8795
32 1 2.7286 2.5993 -2.2225
33 1 5.4191 0.2942 -1.5354
34 1 7.1933 -0.2885 -3.1365
35 1 7.2210 0.7326 -5.3743
36 1 5.1766 3.8520 -9.6766
37 1 3.6743 2.9225 -4.4222
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000724160071.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:17:03
Heat of formation + Delta-G solvation = -41.070458 kcal
Electronic energy + Delta-G solvation = -19255.131645 eV
Core-core repulsion = 16191.269974 eV
Total energy + Delta-G solvation = -3063.861671 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.131 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-41.03970 -40.33344 -38.44369 -37.08186 -34.79193 -34.09475 -30.75798 -29.66508
-27.94511 -27.25424 -25.65565 -25.27276 -23.44007 -22.25831 -20.85166 -19.71127
-19.10919 -17.85952 -17.51406 -16.76641 -16.57197 -16.08590 -15.88369 -15.86812
-15.49380 -15.36565 -14.45101 -14.36276 -14.15040 -13.87661 -13.70144 -13.48459
-13.04160 -12.75117 -12.58620 -12.50507 -12.28542 -12.15137 -12.06702 -11.97368
-11.35325 -11.26879 -10.94529 -10.62344 -10.47456 -9.11304 -8.44947 -8.23954
-6.13435 0.76333 0.90976 1.33992 1.44621 1.51902 2.18618 2.43139
2.89008 2.98297 3.25309 3.55906 3.59475 3.65155 3.87489 3.94805
4.20885 4.30308 4.42815 4.53404 4.55677 4.59078 4.61844 4.77813
4.82669 4.91575 5.01982 5.06612 5.07893 5.13418 5.16571 5.32017
5.47006 5.75451 5.80816 6.03349 6.11162 6.26750 6.59138 6.84444
7.00183 7.83469 8.78759
Molecular weight = 263.13amu
Principal moments of inertia in cm(-1)
A = 0.020487 B = 0.004664 C = 0.004088
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1366.363802 B = 6001.939295 C = 6848.360609
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.399 6.399
3 C 0.052 3.948
4 H 0.096 0.904
5 C -0.140 4.140
6 C -0.149 4.149
7 C 0.126 3.874
8 H 0.108 0.892
9 N -0.733 5.733
10 C 0.256 3.744
11 C -0.265 4.265
12 C -0.026 4.026
13 C -0.261 4.261
14 C 0.153 3.847
15 O -0.232 6.232
16 C -0.411 4.411
17 H 0.099 0.901
18 C -0.024 4.024
19 N -0.922 5.922
20 Si 1.019 2.981
21 H -0.262 1.262
22 H -0.271 1.271
23 H -0.255 1.255
24 C -0.315 4.315
25 H 0.057 0.943
26 H 0.093 0.907
27 H 0.041 0.959
28 H 0.091 0.909
29 H 0.095 0.905
30 H 0.087 0.913
31 H 0.084 0.916
32 H 0.399 0.601
33 H 0.140 0.860
34 H 0.152 0.848
35 H 0.107 0.893
36 H 0.272 0.728
37 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.877 -3.172 20.803 22.839
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.318 6.318
3 C -0.007 4.007
4 H 0.114 0.886
5 C -0.178 4.178
6 C -0.188 4.188
7 C 0.020 3.980
8 H 0.126 0.874
9 N -0.361 5.361
10 C 0.152 3.848
11 C -0.288 4.288
12 C -0.045 4.045
13 C -0.282 4.282
14 C 0.101 3.899
15 O -0.139 6.139
16 C -0.488 4.488
17 H 0.116 0.884
18 C -0.221 4.221
19 N -0.560 5.560
20 Si 0.838 3.162
21 H -0.187 1.187
22 H -0.195 1.195
23 H -0.178 1.178
24 C -0.339 4.339
25 H 0.075 0.925
26 H 0.112 0.888
27 H 0.059 0.941
28 H 0.110 0.890
29 H 0.113 0.887
30 H 0.106 0.894
31 H 0.103 0.897
32 H 0.234 0.766
33 H 0.157 0.843
34 H 0.170 0.830
35 H 0.125 0.875
36 H 0.081 0.919
37 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -8.540 -3.421 20.579 22.542
hybrid contribution -0.842 0.939 -0.970 1.591
sum -9.382 -2.482 19.609 21.880
Atomic orbital electron populations
1.22942 0.79889 1.03686 1.00624 1.87921 1.21221 1.27952 1.94710
1.24425 0.93700 0.85398 0.97135 0.88571 1.23208 0.97255 1.01445
0.95869 1.23244 1.00214 0.99387 0.95962 1.22994 0.96623 0.97631
0.80720 0.87438 1.44661 1.28704 1.49576 1.13167 1.17572 0.88386
0.91294 0.87538 1.20582 0.99030 1.06962 1.02179 1.20825 0.97019
0.96021 0.90596 1.20266 1.02577 1.05388 0.99985 1.19636 0.94032
0.91062 0.85137 1.83949 1.43637 1.58045 1.28241 1.21789 1.01488
1.27288 0.98200 0.88381 1.26589 1.01942 0.99512 0.94061 1.70189
1.35679 1.45073 1.05107 0.84588 0.76002 0.77465 0.78115 1.18717
1.19536 1.17827 1.20510 1.05413 1.12376 0.95633 0.92458 0.88835
0.94080 0.89014 0.88656 0.89449 0.89741 0.76594 0.84266 0.83013
0.87485 0.91885 0.86814
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.38 10.86 113.37 1.23 1.61 16
2 O -0.40 -8.65 10.71 -148.98 -1.60 -10.25 16
3 C 0.05 0.97 4.04 31.12 0.13 1.10 16
4 H 0.10 1.60 7.87 -2.38 -0.02 1.58 16
5 C -0.14 -2.00 7.91 31.12 0.25 -1.75 16
6 C -0.15 -2.56 7.88 31.12 0.25 -2.32 16
7 C 0.13 2.81 3.87 45.52 0.18 2.99 16
8 H 0.11 2.56 6.14 -2.39 -0.01 2.54 16
9 N -0.73 -20.86 5.53 -316.54 -1.75 -22.61 16
10 C 0.26 9.48 6.65 38.20 0.25 9.73 16
11 C -0.27 -9.01 9.26 22.43 0.21 -8.80 16
12 C -0.03 -0.93 10.03 22.23 0.22 -0.71 16
13 C -0.26 -11.89 9.99 22.42 0.22 -11.67 16
14 C 0.15 8.03 6.64 22.56 0.15 8.18 16
15 O -0.23 -14.57 9.76 -22.77 -0.22 -14.79 16
16 C -0.41 -24.73 9.49 67.92 0.64 -24.08 16
17 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16
18 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16
19 N -0.92 -57.86 13.67 21.61 0.30 -57.56 16
20 Si 1.02 43.70 29.55 68.60 2.03 45.72 16
21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16
22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16
23 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16
24 C -0.32 -14.52 9.01 22.52 0.20 -14.31 16
25 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16
26 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16
27 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16
28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16
29 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16
30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16
31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
32 H 0.40 10.55 8.74 -92.71 -0.81 9.74 16
33 H 0.14 3.82 6.05 -2.91 -0.02 3.80 16
34 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16
35 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16
36 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16
37 H 0.11 5.32 5.64 -2.91 -0.02 5.30 16
Total: -1.00 -73.88 312.74 3.42 -70.45
By element:
Atomic # 1 Polarization: 29.73 SS G_CDS: 0.27 Total: 30.00 kcal
Atomic # 6 Polarization: -45.36 SS G_CDS: 4.40 Total: -40.96 kcal
Atomic # 7 Polarization: -78.72 SS G_CDS: -1.46 Total: -80.18 kcal
Atomic # 8 Polarization: -23.22 SS G_CDS: -1.82 Total: -25.04 kcal
Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal
Total: -73.88 3.42 -70.45 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000724160071.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.382 kcal
(2) G-P(sol) polarization free energy of solvation -73.877 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.495 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.452 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.070 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds