Wall clock time and date at job start Mon Mar 30 2020 07:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00097 * 2 1 4 4 H 1.09006 * 112.84700 * 338.31142 * 3 2 1 5 5 C 1.53784 * 113.61443 * 109.50632 * 3 2 1 6 6 C 1.53784 * 87.07832 * 139.98456 * 5 3 2 7 7 C 1.53775 * 113.61581 * 207.00671 * 3 2 1 8 8 H 1.08999 * 113.61371 * 334.56697 * 7 3 2 9 9 N 1.46500 * 113.61920 * 105.46903 * 7 3 2 10 10 C 1.39668 * 120.00571 * 205.00096 * 9 7 3 11 11 C 1.39004 * 120.03767 * 359.71975 * 10 9 7 12 12 C 1.38148 * 120.06099 * 179.76770 * 11 10 9 13 13 C 1.38166 * 120.14357 * 0.51272 * 12 11 10 14 14 C 1.38916 * 120.07973 * 359.74468 * 13 12 11 15 15 O 1.35750 * 120.03449 * 180.02562 * 14 13 12 16 16 C 1.34833 * 117.00201 * 174.43910 * 15 14 13 17 17 H 1.07992 * 119.99613 * 5.05329 * 16 15 14 18 18 C 1.38651 * 119.99629 * 185.05255 * 16 15 14 19 19 N 1.31550 * 120.00428 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99587 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46959 * 89.99934 * 20 18 16 22 22 H 1.48500 * 109.47082 * 210.00423 * 20 18 16 23 23 H 1.48497 * 109.47108 * 330.00364 * 20 18 16 24 24 C 1.38747 * 120.04168 * 180.02562 * 10 9 7 25 25 H 1.09005 * 109.46915 * 299.99314 * 1 2 3 26 26 H 1.09005 * 109.47242 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47469 * 59.99714 * 1 2 3 28 28 H 1.08999 * 113.61264 * 254.53180 * 5 3 2 29 29 H 1.09005 * 113.61173 * 25.43375 * 5 3 2 30 30 H 1.08993 * 113.61208 * 89.12112 * 6 5 3 31 31 H 1.09001 * 113.60775 * 220.01891 * 6 5 3 32 32 H 0.97003 * 119.99300 * 25.00137 * 9 7 3 33 33 H 1.08000 * 119.96701 * 0.02562 * 11 10 9 34 34 H 1.08003 * 119.92795 * 180.23246 * 12 11 10 35 35 H 1.08007 * 119.96124 * 179.76666 * 13 12 11 36 36 H 0.97002 * 120.00166 * 180.02562 * 19 18 16 37 37 H 1.08003 * 120.07174 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3297 2.0717 -0.3712 5 6 2.6906 1.6768 1.3282 6 6 3.8010 2.3278 0.4866 7 6 3.4076 1.3576 -0.6398 8 1 3.9402 0.4073 -0.6034 9 7 3.4210 1.9681 -1.9715 10 6 4.4306 1.6413 -2.8795 11 6 5.4265 0.7412 -2.5185 12 6 6.4227 0.4139 -3.4180 13 6 6.4386 0.9877 -4.6748 14 6 5.4493 1.8919 -5.0399 15 8 5.4655 2.4547 -6.2751 16 6 4.4159 3.2334 -6.6069 17 1 3.6528 3.4517 -5.8746 18 6 4.3166 3.7538 -7.8882 19 7 5.2460 3.4875 -8.7803 20 14 2.8621 4.8321 -8.3480 21 1 3.1896 6.2524 -8.0643 22 1 2.5648 4.6719 -9.7941 23 1 1.6756 4.4290 -7.5512 24 6 4.4444 2.2194 -4.1407 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 -0.8899 28 1 2.1217 2.3887 1.9261 29 1 3.0272 0.8137 1.9026 30 1 3.6111 3.3742 0.2478 31 1 4.8033 2.1574 0.8795 32 1 2.7286 2.5993 -2.2225 33 1 5.4191 0.2942 -1.5354 34 1 7.1933 -0.2885 -3.1365 35 1 7.2210 0.7326 -5.3743 36 1 5.1766 3.8520 -9.6766 37 1 3.6743 2.9225 -4.4222 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724160071.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:03 Heat of formation + Delta-G solvation = -41.070458 kcal Electronic energy + Delta-G solvation = -19255.131645 eV Core-core repulsion = 16191.269974 eV Total energy + Delta-G solvation = -3063.861671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03970 -40.33344 -38.44369 -37.08186 -34.79193 -34.09475 -30.75798 -29.66508 -27.94511 -27.25424 -25.65565 -25.27276 -23.44007 -22.25831 -20.85166 -19.71127 -19.10919 -17.85952 -17.51406 -16.76641 -16.57197 -16.08590 -15.88369 -15.86812 -15.49380 -15.36565 -14.45101 -14.36276 -14.15040 -13.87661 -13.70144 -13.48459 -13.04160 -12.75117 -12.58620 -12.50507 -12.28542 -12.15137 -12.06702 -11.97368 -11.35325 -11.26879 -10.94529 -10.62344 -10.47456 -9.11304 -8.44947 -8.23954 -6.13435 0.76333 0.90976 1.33992 1.44621 1.51902 2.18618 2.43139 2.89008 2.98297 3.25309 3.55906 3.59475 3.65155 3.87489 3.94805 4.20885 4.30308 4.42815 4.53404 4.55677 4.59078 4.61844 4.77813 4.82669 4.91575 5.01982 5.06612 5.07893 5.13418 5.16571 5.32017 5.47006 5.75451 5.80816 6.03349 6.11162 6.26750 6.59138 6.84444 7.00183 7.83469 8.78759 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020487 B = 0.004664 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.363802 B = 6001.939295 C = 6848.360609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.052 3.948 4 H 0.096 0.904 5 C -0.140 4.140 6 C -0.149 4.149 7 C 0.126 3.874 8 H 0.108 0.892 9 N -0.733 5.733 10 C 0.256 3.744 11 C -0.265 4.265 12 C -0.026 4.026 13 C -0.261 4.261 14 C 0.153 3.847 15 O -0.232 6.232 16 C -0.411 4.411 17 H 0.099 0.901 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.255 1.255 24 C -0.315 4.315 25 H 0.057 0.943 26 H 0.093 0.907 27 H 0.041 0.959 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.399 0.601 33 H 0.140 0.860 34 H 0.152 0.848 35 H 0.107 0.893 36 H 0.272 0.728 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.877 -3.172 20.803 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.007 4.007 4 H 0.114 0.886 5 C -0.178 4.178 6 C -0.188 4.188 7 C 0.020 3.980 8 H 0.126 0.874 9 N -0.361 5.361 10 C 0.152 3.848 11 C -0.288 4.288 12 C -0.045 4.045 13 C -0.282 4.282 14 C 0.101 3.899 15 O -0.139 6.139 16 C -0.488 4.488 17 H 0.116 0.884 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.187 1.187 22 H -0.195 1.195 23 H -0.178 1.178 24 C -0.339 4.339 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.234 0.766 33 H 0.157 0.843 34 H 0.170 0.830 35 H 0.125 0.875 36 H 0.081 0.919 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.540 -3.421 20.579 22.542 hybrid contribution -0.842 0.939 -0.970 1.591 sum -9.382 -2.482 19.609 21.880 Atomic orbital electron populations 1.22942 0.79889 1.03686 1.00624 1.87921 1.21221 1.27952 1.94710 1.24425 0.93700 0.85398 0.97135 0.88571 1.23208 0.97255 1.01445 0.95869 1.23244 1.00214 0.99387 0.95962 1.22994 0.96623 0.97631 0.80720 0.87438 1.44661 1.28704 1.49576 1.13167 1.17572 0.88386 0.91294 0.87538 1.20582 0.99030 1.06962 1.02179 1.20825 0.97019 0.96021 0.90596 1.20266 1.02577 1.05388 0.99985 1.19636 0.94032 0.91062 0.85137 1.83949 1.43637 1.58045 1.28241 1.21789 1.01488 1.27288 0.98200 0.88381 1.26589 1.01942 0.99512 0.94061 1.70189 1.35679 1.45073 1.05107 0.84588 0.76002 0.77465 0.78115 1.18717 1.19536 1.17827 1.20510 1.05413 1.12376 0.95633 0.92458 0.88835 0.94080 0.89014 0.88656 0.89449 0.89741 0.76594 0.84266 0.83013 0.87485 0.91885 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.86 113.37 1.23 1.61 16 2 O -0.40 -8.65 10.71 -148.98 -1.60 -10.25 16 3 C 0.05 0.97 4.04 31.12 0.13 1.10 16 4 H 0.10 1.60 7.87 -2.38 -0.02 1.58 16 5 C -0.14 -2.00 7.91 31.12 0.25 -1.75 16 6 C -0.15 -2.56 7.88 31.12 0.25 -2.32 16 7 C 0.13 2.81 3.87 45.52 0.18 2.99 16 8 H 0.11 2.56 6.14 -2.39 -0.01 2.54 16 9 N -0.73 -20.86 5.53 -316.54 -1.75 -22.61 16 10 C 0.26 9.48 6.65 38.20 0.25 9.73 16 11 C -0.27 -9.01 9.26 22.43 0.21 -8.80 16 12 C -0.03 -0.93 10.03 22.23 0.22 -0.71 16 13 C -0.26 -11.89 9.99 22.42 0.22 -11.67 16 14 C 0.15 8.03 6.64 22.56 0.15 8.18 16 15 O -0.23 -14.57 9.76 -22.77 -0.22 -14.79 16 16 C -0.41 -24.73 9.49 67.92 0.64 -24.08 16 17 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 18 C -0.02 -1.39 5.49 84.83 0.47 -0.93 16 19 N -0.92 -57.86 13.67 21.61 0.30 -57.56 16 20 Si 1.02 43.70 29.55 68.60 2.03 45.72 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 24 C -0.32 -14.52 9.01 22.52 0.20 -14.31 16 25 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.40 10.55 8.74 -92.71 -0.81 9.74 16 33 H 0.14 3.82 6.05 -2.91 -0.02 3.80 16 34 H 0.15 4.14 8.06 -2.91 -0.02 4.12 16 35 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 36 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.11 5.32 5.64 -2.91 -0.02 5.30 16 Total: -1.00 -73.88 312.74 3.42 -70.45 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.27 Total: 30.00 kcal Atomic # 6 Polarization: -45.36 SS G_CDS: 4.40 Total: -40.96 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -1.46 Total: -80.18 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -1.82 Total: -25.04 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -73.88 3.42 -70.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724160071.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.382 kcal (2) G-P(sol) polarization free energy of solvation -73.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds