Wall clock time and date at job start Mon Mar 30 2020 06:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34782 * 117.00091 * 2 1 4 4 O 1.21552 * 119.99733 * 359.97438 * 3 2 1 5 5 C 1.47107 * 120.00238 * 180.02562 * 3 2 1 6 6 C 1.37844 * 127.02517 * 0.25130 * 5 3 2 7 7 N 1.34623 * 108.20950 * 180.14216 * 6 5 3 8 8 C 1.46502 * 124.80831 * 179.89934 * 7 6 5 9 9 C 1.52994 * 109.46981 * 263.97600 * 8 7 6 10 10 C 1.50706 * 115.55005 * 39.66254 * 9 8 7 11 11 H 1.07998 * 119.99824 * 272.97009 * 10 9 8 12 12 C 1.37873 * 120.00189 * 92.96560 * 10 9 8 13 13 N 1.31514 * 120.00059 * 173.42964 * 12 10 9 14 14 Si 1.86806 * 119.99936 * 353.43605 * 12 10 9 15 15 H 1.48494 * 109.47414 * 94.26499 * 14 12 10 16 16 H 1.48498 * 109.46813 * 214.26641 * 14 12 10 17 17 H 1.48500 * 109.46751 * 334.26247 * 14 12 10 18 18 C 1.53002 * 117.50572 * 253.95125 * 9 8 7 19 19 C 1.52996 * 117.50130 * 185.32674 * 9 8 7 20 20 C 1.36431 * 110.38290 * 359.62932 * 7 6 5 21 21 C 1.34440 * 109.08235 * 0.22937 * 20 7 6 22 22 C 1.50700 * 126.81142 * 179.97438 * 21 20 7 23 23 H 1.08997 * 109.47412 * 300.00835 * 1 2 3 24 24 H 1.08996 * 109.46906 * 60.00478 * 1 2 3 25 25 H 1.08996 * 109.47302 * 180.02562 * 1 2 3 26 26 H 1.08004 * 125.89143 * 0.03841 * 6 5 3 27 27 H 1.08994 * 109.47468 * 23.98146 * 8 7 6 28 28 H 1.09007 * 109.46652 * 143.98186 * 8 7 6 29 29 H 0.97004 * 119.99924 * 180.02562 * 13 12 10 30 30 H 1.09007 * 117.49288 * 0.02562 * 18 9 8 31 31 H 1.08997 * 117.50321 * 145.02013 * 18 9 8 32 32 H 1.09002 * 117.50397 * 214.98339 * 19 9 8 33 33 H 1.09000 * 117.50053 * 0.02562 * 19 9 8 34 34 H 1.07989 * 125.46060 * 180.25092 * 20 7 6 35 35 H 1.08998 * 109.46904 * 90.02641 * 22 21 20 36 36 H 1.09000 * 109.46908 * 210.02618 * 22 21 20 37 37 H 1.08993 * 109.47214 * 330.02541 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5329 1.2779 -0.0006 6 6 4.4195 0.2224 -0.0060 7 7 5.6693 0.7227 -0.0013 8 6 6.8927 -0.0832 -0.0026 9 6 7.3991 -0.2439 1.4322 10 6 6.3346 -0.4613 2.4766 11 1 5.8543 0.3862 2.9427 12 6 5.9739 -1.7423 2.8370 13 7 5.1412 -1.9344 3.8366 14 14 6.6681 -3.2052 1.9054 15 1 7.8752 -3.7112 2.6069 16 1 5.6462 -4.2806 1.8402 17 1 7.0347 -2.7865 0.5287 18 6 8.6351 0.5607 1.8395 19 6 8.7406 -0.9516 1.6328 20 6 5.6352 2.0866 -0.0012 21 6 4.3540 2.4942 -0.0007 22 6 3.8594 3.9177 0.0001 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 4.1567 -0.8252 -0.0112 27 1 6.6805 -1.0653 -0.4251 28 1 7.6545 0.4139 -0.6032 29 1 4.8877 -2.8356 4.0904 30 1 9.0873 1.2048 1.0853 31 1 8.6785 0.9330 2.8630 32 1 8.8534 -1.5742 2.5204 33 1 9.2627 -1.3024 0.7426 34 1 6.4988 2.7349 -0.0017 35 1 3.7395 4.2612 -1.0274 36 1 2.8998 3.9685 0.5145 37 1 4.5810 4.5528 0.5137 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724641552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:58 Heat of formation + Delta-G solvation = -13.689200 kcal Electronic energy + Delta-G solvation = -20124.482533 eV Core-core repulsion = 17061.808202 eV Total energy + Delta-G solvation = -3062.674331 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.70895 -39.34757 -37.06803 -35.75386 -32.54521 -32.20000 -30.00662 -27.96236 -26.90773 -25.73131 -24.88300 -22.19654 -21.79168 -19.78178 -19.24080 -18.76367 -17.18586 -16.56210 -15.97285 -15.79210 -15.07620 -14.90034 -14.59548 -13.65139 -13.44937 -13.07972 -12.91585 -12.74553 -12.61294 -12.52986 -12.32228 -11.92545 -11.89817 -11.61727 -11.26696 -10.90809 -10.74886 -10.61473 -10.35249 -10.32724 -9.87126 -9.80076 -9.23860 -8.76807 -8.65863 -7.83074 -7.58061 -6.21277 -4.24900 2.14991 2.98574 3.14968 3.21795 3.25660 3.27617 3.66483 3.92910 4.27470 4.66874 5.04018 5.32453 5.39011 5.45129 5.48050 5.50967 5.59465 5.63174 5.78193 5.80299 5.88839 5.93643 6.02480 6.12688 6.20086 6.28441 6.40606 6.49272 6.52825 6.73792 6.77879 6.94312 6.99290 7.38030 7.55217 7.73270 7.90176 8.38475 8.46938 8.85888 9.39498 10.90344 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018827 B = 0.007620 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.907297 B = 3673.744508 C = 4639.194491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.360 6.360 3 C 0.545 3.455 4 O -0.532 6.532 5 C -0.250 4.250 6 C 0.123 3.877 7 N -0.397 5.397 8 C 0.125 3.875 9 C -0.019 4.019 10 C -0.484 4.484 11 H 0.079 0.921 12 C 0.081 3.919 13 N -0.886 5.886 14 Si 0.876 3.124 15 H -0.278 1.278 16 H -0.292 1.292 17 H -0.262 1.262 18 C -0.177 4.177 19 C -0.194 4.194 20 C -0.017 4.017 21 C -0.115 4.115 22 C -0.076 4.076 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.095 0.905 26 H 0.168 0.832 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.266 0.734 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.159 0.841 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.130 3.053 -9.425 9.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.277 6.277 3 C 0.394 3.606 4 O -0.423 6.423 5 C -0.258 4.258 6 C -0.018 4.018 7 N -0.067 5.067 8 C 0.004 3.996 9 C -0.021 4.021 10 C -0.522 4.522 11 H 0.097 0.903 12 C -0.123 4.123 13 N -0.522 5.522 14 Si 0.704 3.296 15 H -0.205 1.205 16 H -0.218 1.218 17 H -0.187 1.187 18 C -0.214 4.214 19 C -0.232 4.232 20 C -0.144 4.144 21 C -0.120 4.120 22 C -0.133 4.133 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.113 0.887 26 H 0.186 0.814 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.176 0.824 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.123 3.035 -9.302 9.785 hybrid contribution 0.232 -1.056 -0.162 1.093 sum 0.109 1.979 -9.464 9.669 Atomic orbital electron populations 1.23114 0.77323 1.02964 1.01989 1.86609 1.22492 1.33572 1.85008 1.20281 0.88054 0.80687 0.71626 1.90733 1.66834 1.35965 1.48802 1.19340 0.87910 0.93829 1.24740 1.22122 0.82874 0.98524 0.98257 1.43392 1.06129 1.05875 1.51290 1.21884 0.84147 0.94745 0.98856 1.19741 0.88656 1.00790 0.92869 1.20124 1.19031 0.93806 1.19200 0.90292 1.24989 0.94494 0.98557 0.94225 1.69899 1.33859 1.22081 1.26329 0.86939 0.78643 0.82709 0.81293 1.20455 1.21839 1.18702 1.22920 1.04117 0.92680 1.01658 1.22939 1.02621 0.95582 1.02030 1.21273 0.97626 0.83286 1.12169 1.20222 0.91048 0.93746 1.06996 1.20104 1.01353 0.90770 1.01068 0.92247 0.92481 0.88683 0.81439 0.89572 0.90958 0.92404 0.90905 0.89285 0.89065 0.90723 0.82390 0.92560 0.90975 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.57 101.05 1.07 1.62 16 2 O -0.36 -6.56 10.42 -40.71 -0.42 -6.98 16 3 C 0.55 10.96 7.95 34.33 0.27 11.23 16 4 O -0.53 -11.19 15.12 -19.31 -0.29 -11.48 16 5 C -0.25 -5.06 6.32 -103.01 -0.65 -5.71 16 6 C 0.12 2.43 10.62 -16.47 -0.17 2.25 16 7 N -0.40 -7.46 2.18 -116.84 -0.25 -7.72 16 8 C 0.13 2.23 5.97 -4.04 -0.02 2.21 16 9 C -0.02 -0.39 1.23 -155.66 -0.19 -0.59 16 10 C -0.48 -12.49 8.29 -34.44 -0.29 -12.78 16 11 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 12 C 0.08 2.16 5.46 -17.82 -0.10 2.07 16 13 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 14 Si 0.88 19.96 24.96 -169.99 -4.24 15.71 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.26 -5.41 5.48 56.52 0.31 -5.10 16 18 C -0.18 -3.23 9.88 -26.73 -0.26 -3.49 16 19 C -0.19 -3.68 7.51 -26.73 -0.20 -3.88 16 20 C -0.02 -0.30 11.25 -16.85 -0.19 -0.49 16 21 C -0.11 -2.14 6.35 -102.53 -0.65 -2.79 16 22 C -0.08 -1.21 9.98 36.01 0.36 -0.85 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.17 3.19 8.06 -52.48 -0.42 2.77 16 27 H 0.09 1.51 6.59 -51.93 -0.34 1.16 16 28 H 0.07 1.07 7.95 -51.93 -0.41 0.66 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 31 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 32 H 0.09 1.88 6.96 -51.93 -0.36 1.52 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.16 2.34 8.06 -52.49 -0.42 1.92 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.27 6.86 -51.93 -0.36 0.91 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 313.61 15.07 4.73 4.73 Total: -1.00 -30.61 313.61 -6.09 -36.70 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.35 Total: 5.24 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.03 Total: -11.20 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.52 Total: -32.72 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.72 Total: -18.46 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.24 Total: 15.71 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.61 -6.09 -36.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724641552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.010 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds