Wall clock time and date at job start Mon Mar 30 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34782 * 117.00091 * 2 1 4 4 O 1.21552 * 119.99733 * 359.97438 * 3 2 1 5 5 C 1.47107 * 120.00238 * 180.02562 * 3 2 1 6 6 C 1.37844 * 127.02517 * 0.25130 * 5 3 2 7 7 N 1.34623 * 108.20950 * 180.14216 * 6 5 3 8 8 C 1.46502 * 124.80831 * 179.89934 * 7 6 5 9 9 C 1.52994 * 109.46981 * 263.97600 * 8 7 6 10 10 C 1.50706 * 115.55005 * 39.66254 * 9 8 7 11 11 H 1.07998 * 119.99824 * 272.97009 * 10 9 8 12 12 C 1.37873 * 120.00189 * 92.96560 * 10 9 8 13 13 N 1.31514 * 120.00059 * 173.42964 * 12 10 9 14 14 Si 1.86806 * 119.99936 * 353.43605 * 12 10 9 15 15 H 1.48494 * 109.47414 * 94.26499 * 14 12 10 16 16 H 1.48498 * 109.46813 * 214.26641 * 14 12 10 17 17 H 1.48500 * 109.46751 * 334.26247 * 14 12 10 18 18 C 1.53002 * 117.50572 * 253.95125 * 9 8 7 19 19 C 1.52996 * 117.50130 * 185.32674 * 9 8 7 20 20 C 1.36431 * 110.38290 * 359.62932 * 7 6 5 21 21 C 1.34440 * 109.08235 * 0.22937 * 20 7 6 22 22 C 1.50700 * 126.81142 * 179.97438 * 21 20 7 23 23 H 1.08997 * 109.47412 * 300.00835 * 1 2 3 24 24 H 1.08996 * 109.46906 * 60.00478 * 1 2 3 25 25 H 1.08996 * 109.47302 * 180.02562 * 1 2 3 26 26 H 1.08004 * 125.89143 * 0.03841 * 6 5 3 27 27 H 1.08994 * 109.47468 * 23.98146 * 8 7 6 28 28 H 1.09007 * 109.46652 * 143.98186 * 8 7 6 29 29 H 0.97004 * 119.99924 * 180.02562 * 13 12 10 30 30 H 1.09007 * 117.49288 * 0.02562 * 18 9 8 31 31 H 1.08997 * 117.50321 * 145.02013 * 18 9 8 32 32 H 1.09002 * 117.50397 * 214.98339 * 19 9 8 33 33 H 1.09000 * 117.50053 * 0.02562 * 19 9 8 34 34 H 1.07989 * 125.46060 * 180.25092 * 20 7 6 35 35 H 1.08998 * 109.46904 * 90.02641 * 22 21 20 36 36 H 1.09000 * 109.46908 * 210.02618 * 22 21 20 37 37 H 1.08993 * 109.47214 * 330.02541 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2009 0.0000 4 8 1.4019 2.2203 -0.0005 5 6 3.5329 1.2779 -0.0006 6 6 4.4195 0.2224 -0.0060 7 7 5.6693 0.7227 -0.0013 8 6 6.8927 -0.0832 -0.0026 9 6 7.3991 -0.2439 1.4322 10 6 6.3346 -0.4613 2.4766 11 1 5.8543 0.3862 2.9427 12 6 5.9739 -1.7423 2.8370 13 7 5.1412 -1.9344 3.8366 14 14 6.6681 -3.2052 1.9054 15 1 7.8752 -3.7112 2.6069 16 1 5.6462 -4.2806 1.8402 17 1 7.0347 -2.7865 0.5287 18 6 8.6351 0.5607 1.8395 19 6 8.7406 -0.9516 1.6328 20 6 5.6352 2.0866 -0.0012 21 6 4.3540 2.4942 -0.0007 22 6 3.8594 3.9177 0.0001 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 4.1567 -0.8252 -0.0112 27 1 6.6805 -1.0653 -0.4251 28 1 7.6545 0.4139 -0.6032 29 1 4.8877 -2.8356 4.0904 30 1 9.0873 1.2048 1.0853 31 1 8.6785 0.9330 2.8630 32 1 8.8534 -1.5742 2.5204 33 1 9.2627 -1.3024 0.7426 34 1 6.4988 2.7349 -0.0017 35 1 3.7395 4.2612 -1.0274 36 1 2.8998 3.9685 0.5145 37 1 4.5810 4.5528 0.5137 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724641552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:57 Heat of formation + Delta-G solvation = -31.002687 kcal Electronic energy + Delta-G solvation = -20125.233302 eV Core-core repulsion = 17061.808202 eV Total energy + Delta-G solvation = -3063.425100 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.14263 -40.82014 -38.61021 -37.24183 -34.25251 -33.90397 -31.40951 -29.31161 -28.22193 -27.59789 -26.30292 -23.66480 -23.26441 -21.27069 -20.88034 -20.19096 -18.76500 -18.15815 -17.58526 -17.21322 -16.75576 -16.40047 -16.05243 -15.17077 -14.83715 -14.73036 -14.45617 -14.27113 -13.96122 -13.89001 -13.75099 -13.33093 -13.27652 -13.02237 -12.87096 -12.46290 -12.29836 -12.09103 -11.93570 -11.71311 -11.59817 -11.38755 -10.91277 -10.69871 -10.30247 -9.31535 -8.98956 -8.26177 -6.33368 0.61216 1.36302 1.37819 1.49122 1.57521 1.88589 2.28918 2.37163 2.41385 3.06569 3.21614 3.95767 4.03620 4.13191 4.19298 4.27367 4.34366 4.35040 4.38227 4.46150 4.51634 4.66812 4.70239 4.75377 4.88284 4.94000 5.00194 5.06082 5.21599 5.26274 5.35144 5.49913 5.55169 5.69785 5.95477 6.27417 6.30033 6.53269 6.76215 6.96621 7.35112 8.90131 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018827 B = 0.007620 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.907297 B = 3673.744508 C = 4639.194491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.372 6.372 3 C 0.539 3.461 4 O -0.550 6.550 5 C -0.277 4.277 6 C 0.106 3.894 7 N -0.400 5.400 8 C 0.128 3.872 9 C -0.047 4.047 10 C -0.472 4.472 11 H 0.018 0.982 12 C 0.021 3.979 13 N -0.948 5.948 14 Si 0.936 3.064 15 H -0.275 1.275 16 H -0.304 1.304 17 H -0.218 1.218 18 C -0.161 4.161 19 C -0.186 4.186 20 C -0.010 4.010 21 C -0.137 4.137 22 C -0.070 4.070 23 H 0.054 0.946 24 H 0.068 0.932 25 H 0.128 0.872 26 H 0.166 0.834 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.263 0.737 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.194 0.806 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.345 3.060 -12.063 12.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.289 6.289 3 C 0.389 3.611 4 O -0.443 6.443 5 C -0.285 4.285 6 C -0.035 4.035 7 N -0.070 5.070 8 C 0.008 3.992 9 C -0.049 4.049 10 C -0.510 4.510 11 H 0.036 0.964 12 C -0.176 4.176 13 N -0.587 5.587 14 Si 0.761 3.239 15 H -0.201 1.201 16 H -0.232 1.232 17 H -0.140 1.140 18 C -0.198 4.198 19 C -0.223 4.223 20 C -0.137 4.137 21 C -0.142 4.142 22 C -0.127 4.127 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.147 0.853 26 H 0.183 0.817 27 H 0.110 0.890 28 H 0.137 0.863 29 H 0.072 0.928 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.210 0.790 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.374 3.056 -11.966 12.577 hybrid contribution -0.596 -0.967 0.756 1.364 sum 1.778 2.090 -11.210 11.541 Atomic orbital electron populations 1.23477 0.74935 1.05352 1.02368 1.86585 1.24965 1.32737 1.84596 1.20449 0.88372 0.80960 0.71361 1.90702 1.67266 1.36513 1.49869 1.19732 0.88334 0.95081 1.25372 1.22176 0.83761 0.98483 0.99062 1.43562 1.06048 1.06482 1.50876 1.21975 0.84495 0.95810 0.96970 1.19665 0.88027 1.04011 0.93155 1.20159 1.19466 0.91627 1.19726 0.96408 1.25863 0.94891 1.01897 0.94986 1.70087 1.36928 1.22480 1.29234 0.85968 0.77462 0.78335 0.82174 1.20101 1.23150 1.14024 1.22967 1.01893 0.93162 1.01796 1.23002 1.00781 0.95756 1.02778 1.21812 0.98328 0.83148 1.10382 1.20660 0.91565 0.94438 1.07508 1.20094 1.00664 0.89913 1.02047 0.92670 0.91339 0.85342 0.81667 0.88994 0.86334 0.92830 0.86555 0.91459 0.91330 0.86639 0.78954 0.90998 0.93261 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 10.57 113.37 1.20 2.06 16 2 O -0.37 -13.84 10.42 -56.93 -0.59 -14.43 16 3 C 0.54 22.29 7.95 70.15 0.56 22.84 16 4 O -0.55 -23.76 15.12 19.67 0.30 -23.46 16 5 C -0.28 -11.36 6.32 -18.82 -0.12 -11.48 16 6 C 0.11 4.19 10.62 84.17 0.89 5.09 16 7 N -0.40 -14.18 2.18 -523.56 -1.14 -15.33 16 8 C 0.13 4.01 5.97 86.38 0.52 4.53 16 9 C -0.05 -1.82 1.23 -52.93 -0.07 -1.88 16 10 C -0.47 -24.74 8.29 25.60 0.21 -24.53 16 11 H 0.02 1.12 8.06 -2.91 -0.02 1.09 16 12 C 0.02 1.16 5.46 84.65 0.46 1.62 16 13 N -0.95 -57.92 13.96 21.45 0.30 -57.62 16 14 Si 0.94 40.52 24.96 68.60 1.71 42.24 16 15 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 17 H -0.22 -7.80 5.48 99.48 0.55 -7.25 16 18 C -0.16 -5.26 9.88 30.59 0.30 -4.96 16 19 C -0.19 -6.23 7.51 30.59 0.23 -6.00 16 20 C -0.01 -0.33 11.25 83.11 0.94 0.60 16 21 C -0.14 -5.00 6.35 -18.51 -0.12 -5.11 16 22 C -0.07 -2.18 9.98 71.24 0.71 -1.47 16 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.17 6.41 8.06 -2.91 -0.02 6.39 16 27 H 0.09 2.76 6.59 -2.39 -0.02 2.75 16 28 H 0.12 2.68 7.95 -2.38 -0.02 2.66 16 29 H 0.26 15.21 8.31 -92.71 -0.77 14.43 16 30 H 0.12 2.84 8.08 -2.38 -0.02 2.82 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.07 2.64 6.96 -2.39 -0.02 2.62 16 33 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.19 4.83 8.06 -2.92 -0.02 4.81 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 36 H 0.05 1.75 6.86 -2.39 -0.02 1.73 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -71.32 313.61 7.19 -64.13 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.90 Total: 23.17 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: 5.72 Total: -18.69 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -0.84 Total: -72.95 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.30 Total: -37.90 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.71 Total: 42.24 kcal Total: -71.32 7.19 -64.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724641552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.129 kcal (2) G-P(sol) polarization free energy of solvation -71.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds