Wall clock time and date at job start Mon Mar 30 2020 06:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47109 * 2 1 4 4 C 1.50693 * 109.47367 * 120.00131 * 2 1 3 5 5 C 1.38634 * 119.54529 * 274.99796 * 4 2 1 6 6 C 1.38579 * 119.35655 * 180.02562 * 5 4 2 7 7 C 1.38641 * 118.49109 * 0.02562 * 6 5 4 8 8 C 1.39308 * 119.05689 * 359.97438 * 7 6 5 9 9 C 1.48066 * 119.72721 * 179.97438 * 8 7 6 10 10 O 1.21430 * 119.99519 * 0.02562 * 9 8 7 11 11 O 1.34667 * 120.00086 * 180.02562 * 9 8 7 12 12 C 1.45206 * 117.00337 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46590 * 30.00105 * 12 11 9 14 14 C 1.52997 * 109.47226 * 270.00329 * 12 11 9 15 15 C 1.50697 * 109.47178 * 149.99810 * 12 11 9 16 16 H 1.07999 * 120.00055 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99687 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00458 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99926 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.46872 * 59.99743 * 19 17 15 21 21 H 1.48503 * 109.47008 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46914 * 299.99916 * 19 17 15 23 23 N 1.31481 * 119.54960 * 95.27391 * 4 2 1 24 24 H 1.09007 * 109.47118 * 300.00195 * 1 2 3 25 25 H 1.09002 * 109.47595 * 59.99781 * 1 2 3 26 26 H 1.09001 * 109.47328 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47098 * 240.00127 * 2 1 3 28 28 H 1.08994 * 109.46858 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46707 * 300.00157 * 3 2 1 30 30 H 1.08998 * 109.47037 * 60.00089 * 3 2 1 31 31 H 1.07995 * 120.32225 * 0.04426 * 5 4 2 32 32 H 1.08003 * 120.75689 * 179.97438 * 6 5 4 33 33 H 1.07993 * 120.46821 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47153 * 299.99431 * 14 12 11 35 35 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 36 36 H 1.09004 * 109.47261 * 59.99603 * 14 12 11 37 37 H 0.96999 * 120.00480 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.1612 -0.0097 2.4196 6 6 2.6240 -0.6667 3.5486 7 6 2.9444 -2.0117 3.4462 8 6 2.7903 -2.6525 2.2189 9 6 3.1285 -4.0885 2.0928 10 8 3.5380 -4.7026 3.0570 11 8 2.9821 -4.7133 0.9089 12 6 3.3335 -6.1213 0.8585 13 1 3.1574 -6.5747 1.8340 14 6 4.8110 -6.2653 0.4884 15 6 2.4862 -6.8137 -0.1776 16 1 1.7569 -6.2518 -0.7422 17 6 2.6421 -8.1647 -0.4048 18 7 3.5306 -8.8489 0.2823 19 14 1.5924 -9.0230 -1.6897 20 1 1.8333 -8.4054 -3.0186 21 1 1.9517 -10.4630 -1.7410 22 1 0.1582 -8.8827 -1.3313 23 7 2.3476 -1.9849 1.1599 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.9031 1.0380 2.4659 32 1 2.7335 -0.1427 4.4866 33 1 3.3076 -2.5550 4.3060 34 1 4.9871 -5.8118 -0.4870 35 1 5.0748 -7.3222 0.4511 36 1 5.4238 -5.7644 1.2379 37 1 3.6400 -9.7994 0.1227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762084848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:12 Heat of formation + Delta-G solvation = -64.939434 kcal Electronic energy + Delta-G solvation = -19429.576993 eV Core-core repulsion = 16364.680285 eV Total energy + Delta-G solvation = -3064.896708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.59910 -39.08693 -35.95493 -35.39864 -33.26350 -32.59526 -30.45057 -29.43433 -27.37223 -25.31641 -24.91359 -23.92545 -22.07145 -20.56006 -19.56352 -17.58146 -16.94866 -16.49915 -15.81317 -15.50963 -15.21939 -14.73980 -14.52400 -14.30754 -13.88160 -13.46055 -12.97208 -12.88624 -12.52300 -12.15932 -12.12237 -11.86334 -11.47600 -11.31820 -11.18620 -11.02017 -11.00991 -10.80768 -10.35413 -10.25079 -9.99751 -9.94410 -9.50646 -9.34707 -9.02555 -8.86919 -8.44702 -6.13974 -4.20225 0.67502 1.20911 2.94201 3.30288 3.32286 3.34321 3.46607 3.95845 4.09672 4.37008 4.52765 4.86059 4.91782 4.98298 5.05022 5.13703 5.18276 5.20531 5.44479 5.58031 5.59689 5.64948 5.76063 5.86887 5.95766 6.06460 6.13719 6.21645 6.54676 6.66720 6.92956 6.93769 7.14888 7.60773 7.74552 7.84353 7.98375 8.17549 8.64027 8.91933 9.44597 10.93654 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.004885 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.281013 B = 5730.656000 C = 6576.422333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.048 4.048 3 C -0.146 4.146 4 C 0.130 3.870 5 C -0.152 4.152 6 C -0.083 4.083 7 C -0.120 4.120 8 C 0.111 3.889 9 C 0.508 3.492 10 O -0.512 6.512 11 O -0.328 6.328 12 C 0.212 3.788 13 H 0.047 0.953 14 C -0.154 4.154 15 C -0.518 4.518 16 H 0.070 0.930 17 C 0.063 3.937 18 N -0.891 5.891 19 Si 0.913 3.087 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 N -0.429 5.429 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.149 0.851 34 H 0.038 0.962 35 H 0.100 0.900 36 H 0.015 0.985 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 19.681 2.986 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.204 4.204 4 C -0.011 4.011 5 C -0.171 4.171 6 C -0.109 4.109 7 C -0.140 4.140 8 C -0.026 4.026 9 C 0.351 3.649 10 O -0.402 6.402 11 O -0.242 6.242 12 C 0.159 3.841 13 H 0.065 0.935 14 C -0.212 4.212 15 C -0.556 4.556 16 H 0.088 0.912 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.740 3.260 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.200 1.200 23 N -0.140 5.140 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.167 0.833 34 H 0.057 0.943 35 H 0.119 0.881 36 H 0.034 0.966 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.045 18.746 2.465 19.151 hybrid contribution -0.270 -0.216 0.322 0.472 sum -3.315 18.530 2.787 19.029 Atomic orbital electron populations 1.21804 0.93501 1.02756 1.01857 1.20074 0.96317 0.95168 0.95174 1.21924 1.01399 0.94873 1.02187 1.21348 0.95199 0.89540 0.95032 1.22223 1.00012 1.01564 0.93338 1.21553 0.96512 0.93811 0.99041 1.22135 0.98398 0.95150 0.98311 1.20480 0.99198 0.92799 0.90146 1.20669 0.75098 0.86332 0.82849 1.90778 1.43284 1.66342 1.39756 1.86670 1.76011 1.30250 1.31295 1.20736 0.93353 0.71014 0.98954 0.93495 1.22163 0.96387 1.04379 0.98268 1.20988 1.20628 0.93246 1.20761 0.91225 1.24877 0.95698 0.96752 0.96612 1.69889 1.33795 1.08552 1.40645 0.86319 0.80361 0.78037 0.81330 1.19909 1.21054 1.19994 1.67577 1.07572 1.08247 1.30586 0.92691 0.91827 0.91889 0.88681 0.92314 0.91749 0.92289 0.84255 0.84031 0.83314 0.94308 0.88149 0.96559 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.18 37.16 0.34 -1.02 16 2 C -0.05 -0.52 3.23 -91.77 -0.30 -0.81 16 3 C -0.15 -1.13 8.62 37.16 0.32 -0.81 16 4 C 0.13 1.75 5.79 -82.60 -0.48 1.27 16 5 C -0.15 -1.61 9.18 -39.31 -0.36 -1.97 16 6 C -0.08 -0.90 10.17 -39.31 -0.40 -1.30 16 7 C -0.12 -1.74 9.63 -39.03 -0.38 -2.12 16 8 C 0.11 2.06 6.75 -83.03 -0.56 1.50 16 9 C 0.51 11.72 7.92 34.76 0.28 12.00 16 10 O -0.51 -12.51 15.58 -19.21 -0.30 -12.81 16 11 O -0.33 -8.51 9.68 -40.40 -0.39 -8.90 16 12 C 0.21 5.94 2.56 -27.89 -0.07 5.87 16 13 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 14 C -0.15 -4.07 9.33 37.16 0.35 -3.72 16 15 C -0.52 -15.08 8.90 -34.44 -0.31 -15.38 16 16 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.77 11.32 55.43 0.63 -25.14 16 19 Si 0.91 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 N -0.43 -7.67 10.03 -6.07 -0.06 -7.73 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.37 6.48 -51.93 -0.34 0.03 16 31 H 0.14 1.01 6.30 -52.49 -0.33 0.68 16 32 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.15 2.03 7.64 -52.49 -0.40 1.63 16 34 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.10 2.78 6.07 -51.93 -0.32 2.47 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 317.00 15.07 4.78 4.78 Total: -1.00 -32.43 317.00 -7.13 -39.56 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.11 Total: -1.49 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.66 Total: -4.82 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: 0.57 Total: -32.88 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.69 Total: -21.71 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.43 -7.13 -39.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762084848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.375 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds