Wall clock time and date at job start Mon Mar 30 2020 06:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47109 * 2 1 4 4 C 1.50693 * 109.47367 * 120.00131 * 2 1 3 5 5 C 1.38634 * 119.54529 * 274.99796 * 4 2 1 6 6 C 1.38579 * 119.35655 * 180.02562 * 5 4 2 7 7 C 1.38641 * 118.49109 * 0.02562 * 6 5 4 8 8 C 1.39308 * 119.05689 * 359.97438 * 7 6 5 9 9 C 1.48066 * 119.72721 * 179.97438 * 8 7 6 10 10 O 1.21430 * 119.99519 * 0.02562 * 9 8 7 11 11 O 1.34667 * 120.00086 * 180.02562 * 9 8 7 12 12 C 1.45206 * 117.00337 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.46590 * 30.00105 * 12 11 9 14 14 C 1.52997 * 109.47226 * 270.00329 * 12 11 9 15 15 C 1.50697 * 109.47178 * 149.99810 * 12 11 9 16 16 H 1.07999 * 120.00055 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99687 * 180.02562 * 15 12 11 18 18 N 1.31511 * 120.00458 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99926 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.46872 * 59.99743 * 19 17 15 21 21 H 1.48503 * 109.47008 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46914 * 299.99916 * 19 17 15 23 23 N 1.31481 * 119.54960 * 95.27391 * 4 2 1 24 24 H 1.09007 * 109.47118 * 300.00195 * 1 2 3 25 25 H 1.09002 * 109.47595 * 59.99781 * 1 2 3 26 26 H 1.09001 * 109.47328 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47098 * 240.00127 * 2 1 3 28 28 H 1.08994 * 109.46858 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46707 * 300.00157 * 3 2 1 30 30 H 1.08998 * 109.47037 * 60.00089 * 3 2 1 31 31 H 1.07995 * 120.32225 * 0.04426 * 5 4 2 32 32 H 1.08003 * 120.75689 * 179.97438 * 6 5 4 33 33 H 1.07993 * 120.46821 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47153 * 299.99431 * 14 12 11 35 35 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 36 36 H 1.09004 * 109.47261 * 59.99603 * 14 12 11 37 37 H 0.96999 * 120.00480 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.1612 -0.0097 2.4196 6 6 2.6240 -0.6667 3.5486 7 6 2.9444 -2.0117 3.4462 8 6 2.7903 -2.6525 2.2189 9 6 3.1285 -4.0885 2.0928 10 8 3.5380 -4.7026 3.0570 11 8 2.9821 -4.7133 0.9089 12 6 3.3335 -6.1213 0.8585 13 1 3.1574 -6.5747 1.8340 14 6 4.8110 -6.2653 0.4884 15 6 2.4862 -6.8137 -0.1776 16 1 1.7569 -6.2518 -0.7422 17 6 2.6421 -8.1647 -0.4048 18 7 3.5306 -8.8489 0.2823 19 14 1.5924 -9.0230 -1.6897 20 1 1.8333 -8.4054 -3.0186 21 1 1.9517 -10.4630 -1.7410 22 1 0.1582 -8.8827 -1.3313 23 7 2.3476 -1.9849 1.1599 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.9031 1.0380 2.4659 32 1 2.7335 -0.1427 4.4866 33 1 3.3076 -2.5550 4.3060 34 1 4.9871 -5.8118 -0.4870 35 1 5.0748 -7.3222 0.4511 36 1 5.4238 -5.7644 1.2379 37 1 3.6400 -9.7994 0.1227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762084848.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:12 Heat of formation + Delta-G solvation = -84.742728 kcal Electronic energy + Delta-G solvation = -19430.435728 eV Core-core repulsion = 16364.680285 eV Total energy + Delta-G solvation = -3065.755443 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.88934 -40.75719 -37.74102 -36.47868 -35.38201 -33.71559 -31.90210 -31.23092 -28.05706 -27.51184 -26.30454 -24.90189 -23.67878 -22.09868 -20.97906 -19.25150 -18.68008 -17.93317 -17.40359 -16.99978 -16.84471 -16.44162 -15.76381 -15.36100 -14.99741 -14.87293 -14.29633 -14.22210 -13.98162 -13.64573 -13.35170 -13.24442 -13.02627 -12.85441 -12.77728 -12.46857 -12.41581 -12.19026 -12.06297 -11.78763 -11.72081 -11.63730 -11.06341 -10.97895 -10.63604 -10.50345 -10.11826 -8.31627 -6.48901 -0.53490 0.21285 1.38384 1.40447 1.43994 1.51651 1.80821 2.37202 2.72112 2.98209 3.01413 3.60624 3.84570 3.91239 4.01118 4.17356 4.28370 4.31187 4.39204 4.47341 4.71967 4.73060 4.75168 4.85299 4.95618 4.96667 4.99684 5.06213 5.11538 5.25441 5.39141 5.42320 5.45330 5.54770 5.59475 5.79949 5.98591 6.50456 6.69305 6.96430 7.22166 8.76368 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023072 B = 0.004885 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.281013 B = 5730.656000 C = 6576.422333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 C -0.139 4.139 4 C 0.117 3.883 5 C -0.125 4.125 6 C -0.067 4.067 7 C -0.117 4.117 8 C 0.068 3.932 9 C 0.500 3.500 10 O -0.539 6.539 11 O -0.344 6.344 12 C 0.213 3.787 13 H 0.011 0.989 14 C -0.140 4.140 15 C -0.551 4.551 16 H 0.062 0.938 17 C 0.019 3.981 18 N -0.916 5.916 19 Si 0.985 3.015 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.269 1.269 23 N -0.473 5.473 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.189 0.811 32 H 0.194 0.806 33 H 0.151 0.849 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.023 0.977 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 22.799 3.162 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.070 4.070 3 C -0.197 4.197 4 C -0.025 4.025 5 C -0.144 4.144 6 C -0.092 4.092 7 C -0.137 4.137 8 C -0.067 4.067 9 C 0.345 3.655 10 O -0.430 6.430 11 O -0.259 6.259 12 C 0.160 3.840 13 H 0.029 0.971 14 C -0.198 4.198 15 C -0.589 4.589 16 H 0.080 0.920 17 C -0.181 4.181 18 N -0.553 5.553 19 Si 0.808 3.192 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.194 1.194 23 N -0.185 5.185 24 H 0.093 0.907 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.206 0.794 32 H 0.211 0.789 33 H 0.169 0.831 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.042 0.958 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.082 21.875 2.656 22.411 hybrid contribution 0.038 -1.029 0.329 1.081 sum -4.044 20.846 2.985 21.444 Atomic orbital electron populations 1.21791 0.92610 1.01355 1.03786 1.20193 0.97000 0.96750 0.93058 1.21906 1.01106 0.92462 1.04205 1.21971 0.94786 0.88297 0.97453 1.22772 0.96656 1.03399 0.91580 1.22114 0.94152 0.91807 1.01152 1.22310 0.97929 0.96989 0.96496 1.20049 1.03696 0.90447 0.92458 1.21640 0.74017 0.88356 0.81469 1.90727 1.44691 1.67611 1.40019 1.86659 1.76789 1.29077 1.33370 1.20485 0.94217 0.72365 0.96942 0.97148 1.21976 0.95671 1.03460 0.98654 1.21211 1.21580 0.94349 1.21710 0.91953 1.25836 0.96752 0.96961 0.98551 1.69997 1.34633 1.09095 1.41588 0.85208 0.78448 0.77149 0.78432 1.18910 1.19653 1.19382 1.67392 1.09161 1.10747 1.31197 0.90692 0.89956 0.94942 0.91273 0.92751 0.90323 0.89731 0.79351 0.78920 0.83127 0.93816 0.89552 0.95802 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.18 71.98 0.66 -1.73 16 2 C -0.05 -1.01 3.23 -11.54 -0.04 -1.05 16 3 C -0.14 -1.61 8.62 71.98 0.62 -0.99 16 4 C 0.12 2.97 5.79 42.70 0.25 3.22 16 5 C -0.12 -2.10 9.18 22.45 0.21 -1.89 16 6 C -0.07 -1.17 10.17 22.45 0.23 -0.94 16 7 C -0.12 -3.29 9.63 22.62 0.22 -3.07 16 8 C 0.07 2.63 6.75 41.87 0.28 2.91 16 9 C 0.50 24.67 7.92 70.43 0.56 25.23 16 10 O -0.54 -28.18 15.58 20.06 0.31 -27.87 16 11 O -0.34 -19.12 9.68 -55.76 -0.54 -19.66 16 12 C 0.21 12.71 2.56 29.85 0.08 12.78 16 13 H 0.01 0.70 7.16 -2.39 -0.02 0.68 16 14 C -0.14 -7.74 9.33 71.98 0.67 -7.07 16 15 C -0.55 -33.48 8.90 25.60 0.23 -33.25 16 16 H 0.06 3.77 7.81 -2.91 -0.02 3.75 16 17 C 0.02 1.08 5.30 84.66 0.45 1.53 16 18 N -0.92 -54.24 11.32 21.45 0.24 -54.00 16 19 Si 0.99 44.63 29.54 68.60 2.03 46.65 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 N -0.47 -17.41 10.03 -173.12 -1.74 -19.15 16 24 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.55 6.48 -2.39 -0.02 0.54 16 31 H 0.19 1.35 6.30 -2.91 -0.02 1.33 16 32 H 0.19 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.15 4.07 7.64 -2.91 -0.02 4.05 16 34 H 0.04 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.09 5.00 6.07 -2.39 -0.01 4.99 16 36 H 0.02 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -76.76 317.00 5.77 -70.98 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.06 Total: 7.36 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 4.41 Total: -4.31 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -1.49 Total: -73.15 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -0.23 Total: -47.53 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -76.76 5.77 -70.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762084848.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.762 kcal (2) G-P(sol) polarization free energy of solvation -76.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds