Wall clock time and date at job start Mon Mar 30 2020 06:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47073 * 2 1 4 4 C 1.50697 * 109.47295 * 239.99272 * 2 1 3 5 5 H 1.08002 * 120.00098 * 239.99780 * 4 2 1 6 6 C 1.37874 * 119.99761 * 60.00559 * 4 2 1 7 7 N 1.31509 * 120.00533 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99754 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46959 * 90.00051 * 8 6 4 10 10 H 1.48498 * 109.47091 * 209.99775 * 8 6 4 11 11 H 1.48499 * 109.47189 * 329.99941 * 8 6 4 12 12 C 1.53004 * 109.46633 * 119.99544 * 2 1 3 13 13 O 1.45205 * 109.47194 * 299.99914 * 12 2 1 14 14 C 1.34231 * 117.00270 * 179.97438 * 13 12 2 15 15 O 1.20826 * 119.99457 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00160 * 180.02562 * 14 13 12 17 17 C 1.50695 * 109.47115 * 180.02562 * 16 14 13 18 18 C 1.38678 * 120.41675 * 270.25421 * 17 16 14 19 19 C 1.38627 * 118.41930 * 180.24221 * 18 17 16 20 20 C 1.38232 * 119.16085 * 359.75178 * 19 18 17 21 21 N 1.31857 * 120.76541 * 359.97438 * 20 19 18 22 22 C 1.31889 * 121.72235 * 0.02562 * 21 20 19 23 23 H 1.08994 * 109.47667 * 300.00574 * 1 2 3 24 24 H 1.09003 * 109.46795 * 60.00900 * 1 2 3 25 25 H 1.09000 * 109.47394 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47181 * 179.97438 * 3 2 1 27 27 H 1.09008 * 109.47237 * 299.99486 * 3 2 1 28 28 H 1.09003 * 109.47420 * 59.99093 * 3 2 1 29 29 H 0.96994 * 120.00690 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.46869 * 180.02562 * 12 2 1 31 31 H 1.08999 * 109.47344 * 60.00302 * 12 2 1 32 32 H 1.09001 * 109.46626 * 60.00335 * 16 14 13 33 33 H 1.08996 * 109.46931 * 300.00207 * 16 14 13 34 34 H 1.07994 * 120.78944 * 359.96926 * 18 17 16 35 35 H 1.07997 * 120.42083 * 179.72800 * 19 18 17 36 36 H 1.07999 * 119.61954 * 180.02562 * 20 19 18 37 37 H 1.08002 * 119.61237 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4826 7 7 0.9430 0.8294 -2.6035 8 14 2.3227 -1.1199 -4.0077 9 1 1.3449 -2.1620 -4.4121 10 1 2.4876 -0.1407 -5.1119 11 1 3.6310 -1.7570 -3.7116 12 6 2.0399 -0.7212 1.2494 13 8 1.5558 -0.0366 2.4349 14 6 1.9159 -0.5468 3.6230 15 8 2.6130 -1.5326 3.6708 16 6 1.4509 0.1098 4.8973 17 6 1.9897 -0.6520 6.0806 18 6 1.2669 -1.7012 6.6283 19 6 1.7992 -2.3703 7.7195 20 6 3.0264 -1.9756 8.2185 21 7 3.6885 -0.9767 7.6687 22 6 3.2127 -0.3178 6.6299 23 1 -0.3634 0.5139 0.8898 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6765 1.9564 0.8899 29 1 0.7084 1.1606 -3.4845 30 1 3.1299 -0.7208 1.2496 31 1 1.6766 -1.7488 1.2494 32 1 0.3614 0.1090 4.9296 33 1 1.8147 1.1367 4.9305 34 1 0.3101 -1.9873 6.2174 35 1 1.2618 -3.1892 8.1743 36 1 3.4482 -2.4920 9.0682 37 1 3.7837 0.4954 6.2067 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764833769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:08 Heat of formation + Delta-G solvation = -80.276897 kcal Electronic energy + Delta-G solvation = -19341.795029 eV Core-core repulsion = 16276.233239 eV Total energy + Delta-G solvation = -3065.561790 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.68795 -40.78249 -38.32154 -36.60118 -34.66453 -33.27386 -32.85172 -29.53084 -27.55921 -27.46166 -26.92481 -24.53466 -23.82793 -21.76952 -20.70767 -18.73168 -18.06632 -17.77415 -17.73392 -17.27670 -16.98682 -16.52979 -15.92656 -15.04063 -14.87945 -14.75304 -14.51167 -14.24740 -13.96746 -13.55765 -13.48248 -13.14763 -13.09520 -12.80929 -12.63922 -12.51112 -12.31961 -12.14360 -11.71264 -11.65045 -11.26827 -11.20581 -10.75975 -10.72455 -10.43638 -10.40501 -9.97444 -8.05168 -6.23285 0.08770 0.33803 1.24825 1.42421 1.44487 1.53073 1.89212 2.45099 2.90120 3.18225 3.43740 3.68473 3.88922 3.96535 4.05745 4.09640 4.27127 4.28826 4.46978 4.55358 4.62287 4.72282 4.83596 4.88790 5.05951 5.16564 5.20744 5.24304 5.27474 5.38260 5.60811 5.64947 5.68239 5.77891 6.09306 6.18716 6.37437 6.77423 6.84859 7.00591 7.44871 8.94290 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.044996 B = 0.003696 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.126003 B = 7574.675376 C = 7722.561137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.060 3.940 3 C -0.119 4.119 4 C -0.536 4.536 5 H 0.047 0.953 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.098 3.902 13 O -0.351 6.351 14 C 0.452 3.548 15 O -0.548 6.548 16 C -0.061 4.061 17 C -0.136 4.136 18 C -0.070 4.070 19 C -0.170 4.170 20 C 0.085 3.915 21 N -0.515 5.515 22 C 0.096 3.904 23 H 0.036 0.964 24 H 0.062 0.938 25 H 0.019 0.981 26 H 0.018 0.982 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.262 0.738 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.166 0.834 36 H 0.180 0.820 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 -1.472 18.380 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.060 3.940 3 C -0.176 4.176 4 C -0.574 4.574 5 H 0.065 0.935 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.777 3.223 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.199 1.199 12 C 0.025 3.975 13 O -0.267 6.267 14 C 0.297 3.703 15 O -0.439 6.439 16 C -0.098 4.098 17 C -0.138 4.138 18 C -0.096 4.096 19 C -0.189 4.189 20 C -0.071 4.071 21 N -0.224 5.224 22 C -0.060 4.060 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.170 0.830 35 H 0.184 0.816 36 H 0.197 0.803 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.077 -1.397 18.553 18.636 hybrid contribution -0.207 -0.922 -1.565 1.828 sum -1.284 -2.319 16.987 17.193 Atomic orbital electron populations 1.21616 0.96924 0.98585 1.00478 1.18271 0.93755 0.93295 0.88695 1.21621 0.97672 0.97882 1.00475 1.21216 1.32360 1.12467 0.91344 0.93481 1.25485 0.94983 0.95539 1.01093 1.69927 1.36682 1.23213 1.23855 0.85676 0.78692 0.78468 0.79494 1.20235 1.20620 1.19940 1.23200 0.97319 0.95104 0.81904 1.86506 1.69329 1.55775 1.15089 1.24414 0.76912 0.82281 0.86662 1.90645 1.37221 1.27473 1.88538 1.20349 1.05202 1.00819 0.83460 1.20461 0.96924 0.98788 0.97595 1.21871 1.00475 0.92637 0.94632 1.22479 0.97450 1.01709 0.97307 1.23312 0.92135 0.92639 0.99031 1.67703 1.35564 1.08462 1.10628 1.22876 0.92696 0.98463 0.91996 0.94498 0.91897 0.96217 0.96287 0.91880 0.94512 0.92804 0.93631 0.93466 0.83741 0.83945 0.82964 0.81623 0.80286 0.82177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.11 71.98 0.58 -4.97 16 2 C 0.06 2.91 0.58 -52.93 -0.03 2.88 16 3 C -0.12 -5.61 8.11 71.98 0.58 -5.02 16 4 C -0.54 -28.76 8.01 25.60 0.21 -28.55 16 5 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 6 C 0.03 1.55 5.15 84.65 0.44 1.98 16 7 N -0.90 -48.59 9.35 21.45 0.20 -48.39 16 8 Si 0.95 42.53 29.54 68.60 2.03 44.55 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 12 C 0.10 4.31 4.26 71.98 0.31 4.61 16 13 O -0.35 -13.00 8.88 -51.42 -0.46 -13.46 16 14 C 0.45 14.46 7.95 71.24 0.57 15.02 16 15 O -0.55 -21.39 15.78 21.96 0.35 -21.04 16 16 C -0.06 -1.21 5.97 29.10 0.17 -1.04 16 17 C -0.14 -2.95 4.39 -19.77 -0.09 -3.04 16 18 C -0.07 -1.34 9.86 22.47 0.22 -1.12 16 19 C -0.17 -2.83 10.11 22.36 0.23 -2.60 16 20 C 0.09 1.64 11.18 84.69 0.95 2.58 16 21 N -0.51 -12.78 10.36 -195.83 -2.03 -14.81 16 22 C 0.10 2.28 10.86 84.67 0.92 3.20 16 23 H 0.04 1.53 7.68 -2.39 -0.02 1.52 16 24 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 25 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 3.25 6.07 -2.38 -0.01 3.24 16 28 H 0.04 1.54 7.68 -2.39 -0.02 1.52 16 29 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 30 H 0.05 2.06 8.13 -2.39 -0.02 2.04 16 31 H 0.05 2.12 8.13 -2.39 -0.02 2.10 16 32 H 0.14 2.07 8.10 -2.39 -0.02 2.05 16 33 H 0.14 2.14 8.09 -2.39 -0.02 2.12 16 34 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -65.75 314.30 6.19 -59.56 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.05 Total: 9.65 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 5.05 Total: -16.06 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -1.83 Total: -63.20 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.11 Total: -34.50 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -65.75 6.19 -59.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764833769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.721 kcal (2) G-P(sol) polarization free energy of solvation -65.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds