Wall clock time and date at job start Mon Mar 30 2020 06:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47120 * 2 1 4 4 C 1.50700 * 109.46880 * 119.99908 * 2 1 3 5 5 C 1.38363 * 119.45582 * 274.97453 * 4 2 1 6 6 C 1.38342 * 119.30566 * 180.02562 * 5 4 2 7 7 C 1.40076 * 118.28563 * 0.02562 * 6 5 4 8 8 C 1.47728 * 120.56197 * 179.97438 * 7 6 5 9 9 O 1.21468 * 119.99812 * 0.02562 * 8 7 6 10 10 O 1.34707 * 119.99737 * 179.97438 * 8 7 6 11 11 C 1.45196 * 116.99798 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47261 * 29.99893 * 11 10 8 13 13 C 1.53008 * 109.47009 * 270.00111 * 11 10 8 14 14 C 1.50702 * 109.47331 * 150.00507 * 11 10 8 15 15 H 1.08003 * 119.99496 * 359.97438 * 14 11 10 16 16 C 1.37872 * 120.00174 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00044 * 359.97438 * 16 14 11 18 18 Si 1.86808 * 119.99899 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46941 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47070 * 119.99640 * 18 16 14 21 21 H 1.48497 * 109.46847 * 239.99410 * 18 16 14 22 22 C 1.39571 * 118.87079 * 359.97438 * 7 6 5 23 23 N 1.31678 * 120.56151 * 0.02562 * 22 7 6 24 24 H 1.08998 * 109.47138 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46723 * 300.00279 * 1 2 3 26 26 H 1.09001 * 109.46580 * 59.99675 * 1 2 3 27 27 H 1.09000 * 109.47170 * 239.99905 * 2 1 3 28 28 H 1.08998 * 109.47208 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00124 * 3 2 1 30 30 H 1.09000 * 109.47176 * 59.99909 * 3 2 1 31 31 H 1.07991 * 120.34557 * 0.02562 * 5 4 2 32 32 H 1.08004 * 120.85304 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.46907 * 179.97438 * 13 11 10 34 34 H 1.09001 * 109.46931 * 299.99984 * 13 11 10 35 35 H 1.08997 * 109.47217 * 60.00366 * 13 11 10 36 36 H 0.97006 * 120.00051 * 180.02562 * 17 16 14 37 37 H 1.08004 * 119.71619 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1606 -0.0091 2.4163 6 6 2.6225 -0.6642 3.5439 7 6 2.9447 -2.0232 3.4367 8 6 3.4428 -2.7717 4.6089 9 8 3.5757 -2.2091 5.6772 10 8 3.7487 -4.0785 4.4932 11 6 4.2320 -4.7504 5.6861 12 1 3.7945 -4.2836 6.5686 13 6 5.7565 -4.6381 5.7526 14 6 3.8371 -6.2040 5.6388 15 1 3.2784 -6.5846 4.7965 16 6 4.1881 -7.0478 6.6711 17 7 4.8680 -6.5842 7.6970 18 14 3.6980 -8.8494 6.6127 19 1 2.9439 -9.1169 5.3617 20 1 4.9178 -9.6956 6.6465 21 1 2.8422 -9.1678 7.7838 22 6 2.7870 -2.6580 2.2038 23 7 2.3434 -1.9905 1.1590 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.9029 1.0386 2.4612 32 1 2.7319 -0.1412 4.4825 33 1 6.1192 -5.1422 6.6484 34 1 6.1940 -5.1049 4.8701 35 1 6.0422 -3.5868 5.7869 36 1 5.1153 -7.1779 8.4232 37 1 3.0309 -3.7056 2.1059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772647197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:22 Heat of formation + Delta-G solvation = -70.306560 kcal Electronic energy + Delta-G solvation = -19199.631516 eV Core-core repulsion = 16134.502073 eV Total energy + Delta-G solvation = -3065.129444 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60087 -39.17730 -35.96165 -35.56083 -33.29292 -32.53531 -30.69980 -29.39241 -27.46511 -25.38502 -25.06190 -23.49100 -22.07267 -20.74457 -19.80057 -17.71976 -16.93597 -16.35284 -16.03847 -15.50180 -15.13228 -14.83644 -14.49461 -14.35217 -13.98450 -13.33294 -13.07112 -12.99545 -12.71246 -12.33377 -12.23619 -11.93983 -11.44943 -11.42291 -11.25795 -11.18884 -11.09824 -10.86733 -10.38965 -10.31078 -10.01151 -9.91521 -9.60915 -9.37570 -9.02402 -8.93045 -8.51801 -6.20659 -4.27657 0.65668 1.21600 3.01666 3.23080 3.29324 3.33851 3.51681 3.89440 4.03500 4.32188 4.48760 4.83026 4.85679 4.93776 4.97468 5.00999 5.12695 5.32820 5.38866 5.43025 5.54078 5.57684 5.68615 5.79412 5.92803 5.98720 6.08827 6.21817 6.56402 6.61218 6.86428 6.87429 7.09304 7.56020 7.68682 7.85869 7.90509 8.10066 8.55025 8.83709 9.37910 10.86908 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037417 B = 0.003922 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.135888 B = 7138.189986 C = 7581.184562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C -0.148 4.148 4 C 0.154 3.846 5 C -0.185 4.185 6 C -0.016 4.016 7 C -0.170 4.170 8 C 0.501 3.499 9 O -0.515 6.515 10 O -0.349 6.349 11 C 0.216 3.784 12 H 0.048 0.952 13 C -0.155 4.155 14 C -0.521 4.521 15 H 0.071 0.929 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.912 3.088 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.161 3.839 23 N -0.491 5.491 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.038 0.962 35 H 0.016 0.984 36 H 0.266 0.734 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.825 13.588 -13.239 19.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.068 4.068 3 C -0.206 4.206 4 C 0.016 3.984 5 C -0.205 4.205 6 C -0.042 4.042 7 C -0.173 4.173 8 C 0.344 3.656 9 O -0.407 6.407 10 O -0.265 6.265 11 C 0.164 3.836 12 H 0.066 0.934 13 C -0.213 4.213 14 C -0.559 4.559 15 H 0.089 0.911 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.739 3.261 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.207 1.207 22 C 0.004 3.996 23 N -0.200 5.200 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.119 0.881 34 H 0.057 0.943 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.775 13.192 -13.514 19.749 hybrid contribution 0.037 -0.515 1.157 1.267 sum -5.738 12.677 -12.357 18.610 Atomic orbital electron populations 1.21804 0.93410 1.02570 1.02135 1.20103 0.96339 0.95414 0.94989 1.21937 1.01497 0.94783 1.02362 1.21490 0.92185 0.90020 0.94662 1.21900 1.03740 1.01818 0.93001 1.21750 0.90730 0.92456 0.99261 1.20475 1.06780 0.95072 0.94967 1.20759 0.75044 0.82729 0.87032 1.90768 1.50786 1.70026 1.29070 1.86531 1.74522 1.20748 1.44743 1.20709 0.91472 0.91199 0.80258 0.93424 1.22174 0.97630 0.97988 1.03519 1.21060 1.36478 0.91746 1.06610 0.91126 1.24891 0.94778 0.99552 0.94765 1.69907 1.37993 1.35914 1.08869 0.86207 0.78354 0.83247 0.78270 1.19410 1.20686 1.20749 1.23310 0.89468 1.00473 0.86368 1.67609 1.12362 1.08342 1.31680 0.92095 0.92411 0.91812 0.88991 0.92236 0.91764 0.92038 0.84061 0.83500 0.88134 0.94297 0.96499 0.92411 0.80746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.18 37.16 0.34 -0.77 16 2 C -0.05 -0.44 3.23 -91.77 -0.30 -0.74 16 3 C -0.15 -1.01 8.61 37.16 0.32 -0.69 16 4 C 0.15 1.87 5.79 -82.50 -0.48 1.39 16 5 C -0.18 -2.12 9.16 -39.50 -0.36 -2.48 16 6 C -0.02 -0.23 9.72 -38.85 -0.38 -0.61 16 7 C -0.17 -2.89 5.89 -104.83 -0.62 -3.51 16 8 C 0.50 10.77 7.88 34.61 0.27 11.05 16 9 O -0.52 -12.27 15.68 -19.24 -0.30 -12.58 16 10 O -0.35 -8.31 9.14 -40.51 -0.37 -8.68 16 11 C 0.22 5.80 2.56 -27.88 -0.07 5.73 16 12 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 13 C -0.16 -3.95 9.33 37.16 0.35 -3.60 16 14 C -0.52 -14.57 8.90 -34.44 -0.31 -14.88 16 15 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 18 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.16 2.55 10.79 -17.12 -0.18 2.37 16 23 N -0.49 -7.17 10.25 -9.12 -0.09 -7.26 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.37 6.48 -51.93 -0.34 0.04 16 31 H 0.14 1.18 6.29 -52.49 -0.33 0.85 16 32 H 0.15 1.95 7.74 -52.48 -0.41 1.54 16 33 H 0.10 2.72 6.07 -51.93 -0.32 2.40 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.18 2.69 7.62 -52.48 -0.40 2.29 16 LS Contribution 316.20 15.07 4.77 4.77 Total: -1.00 -30.81 316.20 -6.99 -37.80 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.09 Total: -0.34 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -1.51 Total: -5.14 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.53 Total: -31.83 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.67 Total: -21.26 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.81 -6.99 -37.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772647197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.507 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds