Wall clock time and date at job start Mon Mar 30 2020 06:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47120 * 2 1 4 4 C 1.50700 * 109.46880 * 119.99908 * 2 1 3 5 5 C 1.38363 * 119.45582 * 274.97453 * 4 2 1 6 6 C 1.38342 * 119.30566 * 180.02562 * 5 4 2 7 7 C 1.40076 * 118.28563 * 0.02562 * 6 5 4 8 8 C 1.47728 * 120.56197 * 179.97438 * 7 6 5 9 9 O 1.21468 * 119.99812 * 0.02562 * 8 7 6 10 10 O 1.34707 * 119.99737 * 179.97438 * 8 7 6 11 11 C 1.45196 * 116.99798 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47261 * 29.99893 * 11 10 8 13 13 C 1.53008 * 109.47009 * 270.00111 * 11 10 8 14 14 C 1.50702 * 109.47331 * 150.00507 * 11 10 8 15 15 H 1.08003 * 119.99496 * 359.97438 * 14 11 10 16 16 C 1.37872 * 120.00174 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00044 * 359.97438 * 16 14 11 18 18 Si 1.86808 * 119.99899 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46941 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47070 * 119.99640 * 18 16 14 21 21 H 1.48497 * 109.46847 * 239.99410 * 18 16 14 22 22 C 1.39571 * 118.87079 * 359.97438 * 7 6 5 23 23 N 1.31678 * 120.56151 * 0.02562 * 22 7 6 24 24 H 1.08998 * 109.47138 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46723 * 300.00279 * 1 2 3 26 26 H 1.09001 * 109.46580 * 59.99675 * 1 2 3 27 27 H 1.09000 * 109.47170 * 239.99905 * 2 1 3 28 28 H 1.08998 * 109.47208 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47362 * 300.00124 * 3 2 1 30 30 H 1.09000 * 109.47176 * 59.99909 * 3 2 1 31 31 H 1.07991 * 120.34557 * 0.02562 * 5 4 2 32 32 H 1.08004 * 120.85304 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.46907 * 179.97438 * 13 11 10 34 34 H 1.09001 * 109.46931 * 299.99984 * 13 11 10 35 35 H 1.08997 * 109.47217 * 60.00366 * 13 11 10 36 36 H 0.97006 * 120.00051 * 180.02562 * 17 16 14 37 37 H 1.08004 * 119.71619 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1606 -0.0091 2.4163 6 6 2.6225 -0.6642 3.5439 7 6 2.9447 -2.0232 3.4367 8 6 3.4428 -2.7717 4.6089 9 8 3.5757 -2.2091 5.6772 10 8 3.7487 -4.0785 4.4932 11 6 4.2320 -4.7504 5.6861 12 1 3.7945 -4.2836 6.5686 13 6 5.7565 -4.6381 5.7526 14 6 3.8371 -6.2040 5.6388 15 1 3.2784 -6.5846 4.7965 16 6 4.1881 -7.0478 6.6711 17 7 4.8680 -6.5842 7.6970 18 14 3.6980 -8.8494 6.6127 19 1 2.9439 -9.1169 5.3617 20 1 4.9178 -9.6956 6.6465 21 1 2.8422 -9.1678 7.7838 22 6 2.7870 -2.6580 2.2038 23 7 2.3434 -1.9905 1.1590 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.9029 1.0386 2.4612 32 1 2.7319 -0.1412 4.4825 33 1 6.1192 -5.1422 6.6484 34 1 6.1940 -5.1049 4.8701 35 1 6.0422 -3.5868 5.7869 36 1 5.1153 -7.1779 8.4232 37 1 3.0309 -3.7056 2.1059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772647197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:22 Heat of formation + Delta-G solvation = -87.618268 kcal Electronic energy + Delta-G solvation = -19200.382208 eV Core-core repulsion = 16134.502073 eV Total energy + Delta-G solvation = -3065.880136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.88002 -40.78761 -37.69749 -36.54649 -35.35870 -33.69310 -32.13222 -31.13835 -28.02495 -27.49200 -26.32969 -24.64007 -23.64318 -22.09892 -21.20900 -19.36206 -18.70135 -17.89635 -17.28914 -17.00838 -16.86998 -16.41206 -15.71529 -15.36496 -14.94810 -14.85215 -14.33718 -14.17417 -14.01835 -13.82596 -13.63426 -13.23026 -13.04715 -12.85639 -12.82563 -12.42461 -12.23263 -12.16081 -12.06082 -11.91979 -11.65737 -11.61639 -11.05377 -11.02241 -10.64129 -10.55445 -10.14172 -8.30910 -6.47840 -0.57300 0.11419 1.41434 1.42363 1.48617 1.56147 1.85020 2.39057 2.66664 3.00087 3.06137 3.58058 3.70002 3.76067 3.97410 4.09524 4.17139 4.28209 4.47810 4.52115 4.68120 4.74933 4.76935 4.83359 4.88333 4.92305 5.02425 5.04752 5.13257 5.22690 5.38875 5.44490 5.45489 5.51393 5.58042 5.84832 6.00496 6.55550 6.75044 6.85741 7.23491 8.77286 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037417 B = 0.003922 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.135888 B = 7138.189986 C = 7581.184562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C -0.146 4.146 4 C 0.158 3.842 5 C -0.168 4.168 6 C -0.016 4.016 7 C -0.195 4.195 8 C 0.499 3.501 9 O -0.547 6.547 10 O -0.355 6.355 11 C 0.218 3.782 12 H 0.010 0.990 13 C -0.143 4.143 14 C -0.548 4.548 15 H 0.069 0.931 16 C 0.017 3.983 17 N -0.917 5.917 18 Si 0.984 3.016 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.275 1.275 22 C 0.160 3.840 23 N -0.505 5.505 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.183 0.817 32 H 0.154 0.846 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.023 0.977 36 H 0.272 0.728 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.858 14.730 -15.007 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.068 4.068 3 C -0.203 4.203 4 C 0.021 3.979 5 C -0.187 4.187 6 C -0.041 4.041 7 C -0.198 4.198 8 C 0.345 3.655 9 O -0.440 6.440 10 O -0.271 6.271 11 C 0.165 3.835 12 H 0.028 0.972 13 C -0.201 4.201 14 C -0.586 4.586 15 H 0.087 0.913 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.196 1.196 21 H -0.201 1.201 22 C 0.003 3.997 23 N -0.214 5.214 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.200 0.800 32 H 0.171 0.829 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.081 0.919 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.808 14.353 -15.300 22.056 hybrid contribution 0.301 -0.717 1.614 1.792 sum -6.507 13.636 -13.686 20.386 Atomic orbital electron populations 1.21809 0.92276 1.01972 1.03644 1.20257 0.97092 0.96439 0.93011 1.21950 1.01228 0.93129 1.04018 1.22242 0.90062 0.89263 0.96351 1.22284 1.01668 1.03421 0.91363 1.21944 0.90319 0.91193 1.00642 1.20261 1.09891 0.96159 0.93537 1.21535 0.74011 0.81790 0.88171 1.90736 1.52351 1.70214 1.30660 1.86517 1.74993 1.22351 1.43209 1.20435 0.92000 0.91059 0.80048 0.97212 1.22001 0.96807 0.98249 1.03004 1.21320 1.37522 0.92503 1.07246 0.91294 1.25837 0.94264 1.04221 0.93991 1.70020 1.38311 1.37718 1.09406 0.85110 0.78362 0.77258 0.78526 1.18726 1.19573 1.20093 1.23208 0.89687 1.00500 0.86348 1.67693 1.12981 1.09755 1.30955 0.93767 0.91700 0.89576 0.89314 0.92706 0.89855 0.90743 0.79966 0.82865 0.89828 0.93394 0.95800 0.91911 0.81371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.18 71.98 0.66 -1.09 16 2 C -0.05 -0.72 3.23 -11.54 -0.04 -0.76 16 3 C -0.15 -1.39 8.61 71.98 0.62 -0.77 16 4 C 0.16 3.48 5.79 42.57 0.25 3.73 16 5 C -0.17 -3.38 9.16 22.32 0.20 -3.17 16 6 C -0.02 -0.42 9.72 22.74 0.22 -0.20 16 7 C -0.20 -6.74 5.89 -20.00 -0.12 -6.86 16 8 C 0.50 22.35 7.88 70.33 0.55 22.91 16 9 O -0.55 -27.20 15.68 19.94 0.31 -26.89 16 10 O -0.35 -17.62 9.14 -56.17 -0.51 -18.13 16 11 C 0.22 12.19 2.56 29.85 0.08 12.27 16 12 H 0.01 0.63 7.16 -2.39 -0.02 0.61 16 13 C -0.14 -7.49 9.33 71.98 0.67 -6.82 16 14 C -0.55 -31.47 8.90 25.60 0.23 -31.24 16 15 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 16 C 0.02 0.92 5.30 84.65 0.45 1.37 16 17 N -0.92 -52.88 11.32 21.44 0.24 -52.64 16 18 Si 0.98 43.11 29.54 68.60 2.03 45.14 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 22 C 0.16 5.11 10.79 85.04 0.92 6.03 16 23 N -0.50 -14.28 10.25 -182.77 -1.87 -16.16 16 24 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.53 6.48 -2.39 -0.02 0.52 16 31 H 0.18 2.16 6.29 -2.92 -0.02 2.14 16 32 H 0.15 3.93 7.74 -2.91 -0.02 3.90 16 33 H 0.08 4.67 6.07 -2.39 -0.01 4.65 16 34 H 0.05 2.35 8.14 -2.39 -0.02 2.34 16 35 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.27 14.56 8.31 -92.70 -0.77 13.79 16 37 H 0.17 5.42 7.62 -2.91 -0.02 5.40 16 Total: -1.00 -68.45 316.20 5.95 -62.50 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 1.06 Total: 10.78 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 4.69 Total: -4.61 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -1.63 Total: -68.80 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -0.20 Total: -45.01 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -68.45 5.95 -62.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772647197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.121 kcal (2) G-P(sol) polarization free energy of solvation -68.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds