Wall clock time and date at job start Mon Mar 30 2020 07:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30611 * 1 3 3 Si 1.86801 * 119.99871 * 2 1 4 4 H 1.48503 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46943 * 299.99648 * 3 2 1 6 6 H 1.48496 * 109.47141 * 60.00314 * 3 2 1 7 7 C 1.40169 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.41525 * 119.99648 * 359.97438 * 7 2 1 10 10 O 1.21818 * 120.00546 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99927 * 180.02562 * 9 7 2 12 12 C 1.38589 * 120.00369 * 180.02562 * 11 9 7 13 13 C 1.36669 * 126.31416 * 0.17082 * 12 11 9 14 14 C 1.39467 * 107.84179 * 180.24013 * 13 12 11 15 15 N 1.30995 * 108.53612 * 359.75938 * 14 13 12 16 16 N 1.36054 * 126.31667 * 179.97438 * 12 11 9 17 17 C 1.46500 * 126.12158 * 0.02562 * 16 12 11 18 18 C 1.52997 * 109.47473 * 239.71402 * 17 16 12 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 17 16 20 20 C 1.52996 * 109.47328 * 60.00126 * 19 18 17 21 21 C 1.53002 * 109.46891 * 299.99597 * 20 19 18 22 22 C 1.52997 * 109.46978 * 60.00410 * 21 20 19 23 23 H 0.96993 * 120.00446 * 0.02562 * 1 2 3 24 24 H 0.97005 * 119.99718 * 0.02562 * 11 9 7 25 25 H 1.08002 * 126.08476 * 0.02562 * 13 12 11 26 26 H 1.07997 * 125.72925 * 179.73733 * 14 13 12 27 27 H 1.08998 * 109.46845 * 359.71951 * 17 16 12 28 28 H 1.09002 * 109.47153 * 59.99757 * 18 17 16 29 29 H 1.09001 * 109.46832 * 299.99948 * 18 17 16 30 30 H 1.09004 * 109.46724 * 180.02562 * 19 18 17 31 31 H 1.09001 * 109.47194 * 299.99650 * 19 18 17 32 32 H 1.08992 * 109.47554 * 59.99639 * 20 19 18 33 33 H 1.09004 * 109.47108 * 179.97438 * 20 19 18 34 34 H 1.09002 * 109.47097 * 180.02562 * 21 20 19 35 35 H 1.09001 * 109.47142 * 300.00176 * 21 20 19 36 36 H 1.09001 * 109.47375 * 59.99908 * 22 21 20 37 37 H 1.09000 * 109.47140 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 3.7001 1.3465 0.0006 5 1 1.8814 2.3964 -1.2125 6 1 1.8814 2.3964 1.2125 7 6 2.0070 -1.2139 -0.0005 8 1 3.0870 -1.2138 -0.0001 9 6 1.2994 -2.4395 -0.0005 10 8 0.0812 -2.4396 -0.0005 11 7 1.9732 -3.6067 -0.0005 12 6 1.2804 -4.8070 -0.0011 13 6 -0.0780 -4.9574 -0.0049 14 6 -0.3567 -6.3239 0.0015 15 7 0.7771 -6.9801 0.0038 16 7 1.8269 -6.0529 -0.0016 17 6 3.2576 -6.3684 -0.0012 18 6 3.5995 -7.1878 -1.2472 19 6 5.0935 -7.5178 -1.2464 20 6 5.4365 -8.3268 0.0061 21 6 5.0946 -7.5073 1.2520 22 6 3.6006 -7.1774 1.2513 23 1 -0.4850 0.8399 -0.0004 24 1 2.9433 -3.6067 -0.0002 25 1 -0.8063 -4.1598 -0.0085 26 1 -1.3417 -6.7666 0.0046 27 1 3.8336 -5.4430 -0.0055 28 1 3.3548 -6.6116 -2.1395 29 1 3.0234 -8.1131 -1.2429 30 1 5.3372 -8.1012 -2.1343 31 1 5.6700 -6.5926 -1.2505 32 1 4.8601 -9.2519 0.0102 33 1 6.5008 -8.5623 0.0064 34 1 5.3393 -8.0835 2.1443 35 1 5.6710 -6.5822 1.2479 36 1 3.0242 -8.1025 1.2554 37 1 3.3569 -6.5940 2.1392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772745504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:26 Heat of formation + Delta-G solvation = 22.080079 kcal Electronic energy + Delta-G solvation = -19946.872555 eV Core-core repulsion = 16918.042048 eV Total energy + Delta-G solvation = -3028.830507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58537 -38.26039 -37.45096 -33.59523 -32.74247 -32.15352 -30.86864 -28.68393 -28.06364 -26.31851 -22.96545 -22.66886 -21.58483 -20.63993 -19.25320 -18.97568 -17.70214 -16.58810 -15.55665 -15.45429 -14.68837 -14.44010 -14.09073 -14.05419 -13.88548 -13.45566 -12.87360 -12.86104 -12.44098 -12.32198 -12.10371 -11.92797 -11.42172 -11.37575 -11.21710 -11.20420 -10.76174 -10.69434 -10.43885 -10.38447 -10.30161 -9.75494 -9.72889 -8.99222 -8.13382 -7.74005 -6.92467 -6.44365 -4.98157 2.69855 2.94472 3.01409 3.09906 3.14025 3.78591 3.92918 4.39729 4.45516 4.55609 4.66089 4.79321 4.94397 5.13678 5.23484 5.38012 5.41077 5.49150 5.55356 5.67002 5.73902 5.91008 5.91090 5.97265 6.09683 6.10483 6.22851 6.24697 6.45395 6.58938 7.10414 7.14303 7.23271 7.69572 7.75244 7.98145 8.19629 8.54660 8.73172 9.20664 10.31104 10.50558 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.023390 B = 0.005309 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.805783 B = 5272.550043 C = 6128.574405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.088 3.912 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.548 3.452 10 O -0.551 6.551 11 N -0.672 5.672 12 C 0.343 3.657 13 C -0.307 4.307 14 C 0.053 3.947 15 N -0.327 5.327 16 N -0.403 5.403 17 C 0.173 3.827 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.117 4.117 22 C -0.124 4.124 23 H 0.274 0.726 24 H 0.387 0.613 25 H 0.172 0.828 26 H 0.172 0.828 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.054 -10.738 0.001 14.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.135 4.135 3 Si 0.739 3.261 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.571 4.571 8 H 0.089 0.911 9 C 0.357 3.643 10 O -0.432 6.432 11 N -0.319 5.319 12 C 0.121 3.879 13 C -0.339 4.339 14 C -0.132 4.132 15 N -0.149 5.149 16 N -0.193 5.193 17 C 0.070 3.930 18 C -0.162 4.162 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.163 4.163 23 H 0.085 0.915 24 H 0.220 0.780 25 H 0.189 0.811 26 H 0.189 0.811 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.661 -11.672 0.003 15.151 hybrid contribution 0.611 1.619 0.002 1.730 sum 10.271 -10.053 0.005 14.372 Atomic orbital electron populations 1.69994 1.07291 1.28014 1.31829 1.25748 0.94681 1.00686 0.92395 0.86193 0.80455 0.80961 0.78526 1.18567 1.19835 1.19843 1.19932 0.94351 0.89583 1.53214 0.91069 1.16995 0.87684 0.81231 0.78394 1.90594 1.13405 1.84888 1.54280 1.43823 1.09051 1.02960 1.76095 1.18672 0.91775 0.80383 0.97050 1.21765 0.93675 0.96753 1.21738 1.23571 0.96763 0.93505 0.99381 1.77172 0.93913 1.13998 1.29866 1.48816 1.05204 1.02298 1.63012 1.21012 0.76918 0.98863 0.96216 1.21847 0.96352 1.01051 0.96991 1.21524 0.95510 1.00367 0.98083 1.21569 1.00920 0.98840 0.94509 1.21524 0.95513 1.00324 0.98122 1.21852 0.96351 1.01119 0.96945 0.91496 0.77991 0.81088 0.81140 0.89488 0.91614 0.90528 0.91548 0.91749 0.91791 0.91927 0.91550 0.91748 0.90526 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.98 11.72 55.56 0.65 -20.33 16 2 C 0.09 2.31 5.50 -17.35 -0.10 2.22 16 3 Si 0.91 18.84 29.56 -169.99 -5.02 13.82 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.54 -14.23 9.30 -37.61 -0.35 -14.58 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.29 16 9 C 0.55 15.07 7.52 -15.01 -0.11 14.95 16 10 O -0.55 -16.96 11.98 5.08 0.06 -16.90 16 11 N -0.67 -15.34 5.37 -13.99 -0.08 -15.42 16 12 C 0.34 7.69 7.68 -153.10 -1.18 6.51 16 13 C -0.31 -7.14 9.65 -39.69 -0.38 -7.53 16 14 C 0.05 1.04 11.99 -17.45 -0.21 0.83 16 15 N -0.33 -6.40 12.42 30.57 0.38 -6.02 16 16 N -0.40 -7.67 3.31 -53.80 -0.18 -7.85 16 17 C 0.17 2.54 2.97 -67.93 -0.20 2.34 16 18 C -0.12 -1.61 5.47 -26.73 -0.15 -1.75 16 19 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 20 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 21 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 22 C -0.12 -1.61 5.46 -26.73 -0.15 -1.76 16 23 H 0.27 6.94 8.29 -40.82 -0.34 6.60 16 24 H 0.39 7.50 7.51 -40.82 -0.31 7.20 16 25 H 0.17 4.48 5.82 -52.49 -0.31 4.18 16 26 H 0.17 2.70 8.06 -52.49 -0.42 2.28 16 27 H 0.09 1.22 6.85 -51.93 -0.36 0.86 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 304.80 15.07 4.59 4.59 Total: -1.00 -32.12 304.80 -8.05 -40.17 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.16 Total: 10.55 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -3.30 Total: -2.63 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.78 Total: -49.61 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: 0.06 Total: -16.90 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.12 -8.05 -40.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772745504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.254 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds