Wall clock time and date at job start Mon Mar 30 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50692 * 109.47369 * 2 1 4 4 C 1.38169 * 120.50456 * 264.99888 * 3 2 1 5 5 N 1.31798 * 120.90277 * 179.70000 * 4 3 2 6 6 C 1.31832 * 122.05925 * 0.27802 * 5 4 3 7 7 C 1.38130 * 120.89837 * 359.97438 * 6 5 4 8 8 C 1.39847 * 120.50512 * 85.24612 * 3 2 1 9 9 C 1.48051 * 120.92407 * 0.02562 * 8 3 2 10 10 O 1.21433 * 120.00145 * 0.27359 * 9 8 3 11 11 O 1.34672 * 119.99868 * 180.27279 * 9 8 3 12 12 C 1.45203 * 116.99869 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46756 * 180.02562 * 12 11 9 14 14 C 1.53009 * 109.46811 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.46812 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00316 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99499 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00250 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99615 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47255 * 60.00072 * 19 17 15 21 21 H 1.48500 * 109.46762 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47105 * 299.99521 * 19 17 15 23 23 H 1.08996 * 109.47471 * 300.00175 * 1 2 3 24 24 H 1.09003 * 109.47155 * 59.99908 * 1 2 3 25 25 H 1.09005 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47250 * 239.99818 * 2 1 3 27 27 H 1.09003 * 109.47155 * 120.00092 * 2 1 3 28 28 H 1.08002 * 119.55176 * 359.97438 * 4 3 2 29 29 H 1.07994 * 119.55188 * 179.97438 * 6 5 4 30 30 H 1.08006 * 120.49415 * 180.02562 * 7 6 5 31 31 H 1.08996 * 109.46782 * 299.99599 * 12 11 9 32 32 H 1.08994 * 109.47366 * 59.99857 * 12 11 9 33 33 H 1.09004 * 109.46819 * 299.98982 * 13 12 11 34 34 H 1.08994 * 109.47479 * 59.99707 * 13 12 11 35 35 H 1.08998 * 109.46643 * 299.99944 * 14 13 12 36 36 H 1.09005 * 109.46689 * 59.99593 * 14 13 12 37 37 H 0.97003 * 119.99943 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3640 2.0474 -1.1859 5 7 2.7986 3.2916 -1.1956 6 6 2.9423 3.9912 -0.0875 7 6 2.6390 3.4415 1.1429 8 6 2.1749 2.1233 1.2008 9 6 1.8378 1.4915 2.4966 10 8 1.4359 0.3460 2.5272 11 8 1.9769 2.1872 3.6413 12 6 1.6282 1.5041 4.8743 13 6 1.8488 2.4465 6.0592 14 6 1.4808 1.7270 7.3584 15 6 1.6988 2.6549 8.5256 16 1 2.0636 3.6574 8.3577 17 6 1.4333 2.2237 9.8080 18 7 0.9894 1.0028 10.0126 19 14 1.7027 3.3743 11.2548 20 1 0.8469 4.5774 11.0965 21 1 1.3456 2.6759 12.5157 22 1 3.1292 3.7841 11.3023 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2616 1.5118 -2.1182 29 1 3.3021 5.0080 -0.1424 30 1 2.7588 4.0207 2.0465 31 1 0.5810 1.2037 4.8395 32 1 2.2560 0.6207 4.9903 33 1 2.8960 2.7472 6.0941 34 1 1.2208 3.3297 5.9429 35 1 0.4337 1.4265 7.3232 36 1 2.1086 0.8435 7.4748 37 1 0.8030 0.6993 10.9148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781265538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:01 Heat of formation + Delta-G solvation = -71.145738 kcal Electronic energy + Delta-G solvation = -18898.157688 eV Core-core repulsion = 15832.991854 eV Total energy + Delta-G solvation = -3065.165833 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.08034 -39.65708 -36.77813 -34.60318 -34.06870 -32.73128 -31.64845 -30.01415 -27.33519 -25.43158 -24.38316 -23.30654 -21.82310 -21.08002 -20.37676 -18.20205 -17.20779 -16.51905 -16.45281 -16.10059 -15.65030 -15.03389 -14.58754 -14.50478 -14.04499 -14.00807 -13.83129 -13.20891 -12.81698 -12.29824 -12.25042 -12.19614 -11.95085 -11.54314 -11.24278 -10.98353 -10.71276 -10.68865 -10.52583 -10.43509 -10.13397 -9.78264 -9.72338 -9.50132 -9.26219 -9.21699 -8.41856 -6.06738 -4.10145 0.35551 0.77974 2.49144 2.63560 3.30295 3.34815 3.37176 3.51388 4.10267 4.35510 4.40670 4.46436 4.56094 4.70116 5.05793 5.15207 5.23874 5.29216 5.37985 5.49190 5.49641 5.54225 5.58486 5.64753 5.85178 5.92572 6.06651 6.12428 6.28764 6.45746 6.47114 6.75357 6.91776 7.55444 7.58325 7.66191 7.74885 7.91029 8.31764 8.95801 9.54362 11.04631 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035362 B = 0.003350 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.618768 B = 8356.040589 C = 9036.247583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C -0.071 4.071 4 C 0.091 3.909 5 N -0.462 5.462 6 C 0.082 3.918 7 C -0.112 4.112 8 C -0.078 4.078 9 C 0.502 3.498 10 O -0.492 6.492 11 O -0.351 6.351 12 C 0.069 3.931 13 C -0.109 4.109 14 C 0.025 3.975 15 C -0.524 4.524 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.107 0.893 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.153 0.847 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 1.690 -21.602 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 C -0.073 4.073 4 C -0.067 4.067 5 N -0.171 5.171 6 C -0.075 4.075 7 C -0.132 4.132 8 C -0.087 4.087 9 C 0.346 3.654 10 O -0.381 6.381 11 O -0.267 6.267 12 C -0.003 4.003 13 C -0.147 4.147 14 C -0.012 4.012 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.125 0.875 28 H 0.180 0.820 29 H 0.182 0.818 30 H 0.171 0.829 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.107 1.618 -22.169 22.327 hybrid contribution -0.125 0.109 1.785 1.792 sum 1.982 1.727 -20.384 20.553 Atomic orbital electron populations 1.21603 0.93943 1.02197 1.01601 1.20868 0.97032 0.90968 1.04661 1.21164 0.95849 0.97996 0.92263 1.22693 0.95984 0.90838 0.97166 1.67538 1.10320 1.07417 1.31836 1.22804 0.97268 1.00233 0.87162 1.22601 0.95547 0.94257 1.00793 1.19490 1.02956 0.95142 0.91093 1.21000 0.75195 0.84362 0.84850 1.90764 1.41857 1.17884 1.87582 1.86534 1.78339 1.46191 1.15663 1.23584 1.00824 0.96605 0.79306 1.21785 1.01900 0.98245 0.92759 1.19047 0.97159 0.95863 0.89179 1.21125 1.44607 0.99284 0.91157 0.92458 1.25028 0.95091 0.95206 0.99085 1.69951 1.44994 1.16732 1.21655 0.86599 0.78716 0.80817 0.81547 1.20157 1.21238 1.20153 0.92425 0.93197 0.91937 0.90985 0.87492 0.82002 0.81838 0.82892 0.91268 0.91257 0.92065 0.92069 0.96207 0.96210 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.58 37.16 0.36 -1.01 16 2 C -0.10 -0.99 5.35 -27.89 -0.15 -1.14 16 3 C -0.07 -0.77 5.19 -104.05 -0.54 -1.31 16 4 C 0.09 0.88 10.84 -17.59 -0.19 0.69 16 5 N -0.46 -4.92 10.33 -13.30 -0.14 -5.06 16 6 C 0.08 0.77 11.17 -17.59 -0.20 0.57 16 7 C -0.11 -1.18 9.71 -39.01 -0.38 -1.55 16 8 C -0.08 -0.96 5.91 -104.66 -0.62 -1.58 16 9 C 0.50 7.51 7.90 34.76 0.27 7.78 16 10 O -0.49 -8.03 12.12 -19.21 -0.23 -8.26 16 11 O -0.35 -5.63 9.58 -40.42 -0.39 -6.02 16 12 C 0.07 1.23 5.47 37.16 0.20 1.43 16 13 C -0.11 -2.20 5.53 -26.73 -0.15 -2.35 16 14 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 15 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 19 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H 0.06 0.70 7.30 -51.93 -0.38 0.32 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.56 8.06 -51.93 -0.42 0.14 16 27 H 0.11 1.32 5.64 -51.93 -0.29 1.03 16 28 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.15 1.44 7.71 -52.48 -0.40 1.03 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 318.39 15.07 4.80 4.80 Total: -1.00 -30.89 318.39 -7.45 -38.34 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -5.26 Total: -2.95 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -1.94 Total: -11.33 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.60 Total: -30.90 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.62 Total: -14.28 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.89 -7.45 -38.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781265538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.807 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds