Wall clock time and date at job start Mon Mar 30 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50692 * 109.47369 * 2 1 4 4 C 1.38169 * 120.50456 * 264.99888 * 3 2 1 5 5 N 1.31798 * 120.90277 * 179.70000 * 4 3 2 6 6 C 1.31832 * 122.05925 * 0.27802 * 5 4 3 7 7 C 1.38130 * 120.89837 * 359.97438 * 6 5 4 8 8 C 1.39847 * 120.50512 * 85.24612 * 3 2 1 9 9 C 1.48051 * 120.92407 * 0.02562 * 8 3 2 10 10 O 1.21433 * 120.00145 * 0.27359 * 9 8 3 11 11 O 1.34672 * 119.99868 * 180.27279 * 9 8 3 12 12 C 1.45203 * 116.99869 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46756 * 180.02562 * 12 11 9 14 14 C 1.53009 * 109.46811 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.46812 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00316 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99499 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00250 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99615 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47255 * 60.00072 * 19 17 15 21 21 H 1.48500 * 109.46762 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47105 * 299.99521 * 19 17 15 23 23 H 1.08996 * 109.47471 * 300.00175 * 1 2 3 24 24 H 1.09003 * 109.47155 * 59.99908 * 1 2 3 25 25 H 1.09005 * 109.47245 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47250 * 239.99818 * 2 1 3 27 27 H 1.09003 * 109.47155 * 120.00092 * 2 1 3 28 28 H 1.08002 * 119.55176 * 359.97438 * 4 3 2 29 29 H 1.07994 * 119.55188 * 179.97438 * 6 5 4 30 30 H 1.08006 * 120.49415 * 180.02562 * 7 6 5 31 31 H 1.08996 * 109.46782 * 299.99599 * 12 11 9 32 32 H 1.08994 * 109.47366 * 59.99857 * 12 11 9 33 33 H 1.09004 * 109.46819 * 299.98982 * 13 12 11 34 34 H 1.08994 * 109.47479 * 59.99707 * 13 12 11 35 35 H 1.08998 * 109.46643 * 299.99944 * 14 13 12 36 36 H 1.09005 * 109.46689 * 59.99593 * 14 13 12 37 37 H 0.97003 * 119.99943 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3640 2.0474 -1.1859 5 7 2.7986 3.2916 -1.1956 6 6 2.9423 3.9912 -0.0875 7 6 2.6390 3.4415 1.1429 8 6 2.1749 2.1233 1.2008 9 6 1.8378 1.4915 2.4966 10 8 1.4359 0.3460 2.5272 11 8 1.9769 2.1872 3.6413 12 6 1.6282 1.5041 4.8743 13 6 1.8488 2.4465 6.0592 14 6 1.4808 1.7270 7.3584 15 6 1.6988 2.6549 8.5256 16 1 2.0636 3.6574 8.3577 17 6 1.4333 2.2237 9.8080 18 7 0.9894 1.0028 10.0126 19 14 1.7027 3.3743 11.2548 20 1 0.8469 4.5774 11.0965 21 1 1.3456 2.6759 12.5157 22 1 3.1292 3.7841 11.3023 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.2616 1.5118 -2.1182 29 1 3.3021 5.0080 -0.1424 30 1 2.7588 4.0207 2.0465 31 1 0.5810 1.2037 4.8395 32 1 2.2560 0.6207 4.9903 33 1 2.8960 2.7472 6.0941 34 1 1.2208 3.3297 5.9429 35 1 0.4337 1.4265 7.3232 36 1 2.1086 0.8435 7.4748 37 1 0.8030 0.6993 10.9148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781265538.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:01 Heat of formation + Delta-G solvation = -87.959797 kcal Electronic energy + Delta-G solvation = -18898.886800 eV Core-core repulsion = 15832.991854 eV Total energy + Delta-G solvation = -3065.894946 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.08183 -40.69829 -38.04626 -36.00493 -35.41580 -33.93302 -33.27703 -30.80089 -29.12168 -26.60644 -25.17729 -24.98459 -22.82281 -22.25489 -21.96212 -19.27784 -18.66209 -18.03954 -17.76555 -17.27200 -16.49796 -16.47364 -16.00173 -15.80448 -15.09526 -14.92770 -14.69573 -14.54790 -14.06023 -13.88725 -13.81450 -13.53308 -13.03290 -12.82043 -12.56950 -12.49816 -12.34839 -12.15311 -12.05439 -11.64172 -11.47503 -11.41063 -11.28020 -11.00521 -10.57513 -10.49379 -10.02182 -8.22549 -6.34233 -0.56559 0.02542 1.39789 1.40321 1.43931 1.44471 1.52781 2.40819 2.70849 3.11471 3.33770 3.44539 3.66519 3.71977 3.86322 3.97040 4.00948 4.31153 4.33782 4.37386 4.44531 4.63703 4.66403 4.77417 4.82525 4.84867 4.90526 5.02821 5.08114 5.19732 5.30897 5.45207 5.50989 5.57777 5.62225 5.78949 6.17840 6.53360 6.81568 6.82572 7.35447 8.89424 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035362 B = 0.003350 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.618768 B = 8356.040589 C = 9036.247583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 C -0.075 4.075 4 C 0.096 3.904 5 N -0.474 5.474 6 C 0.086 3.914 7 C -0.114 4.114 8 C -0.099 4.099 9 C 0.499 3.501 10 O -0.511 6.511 11 O -0.350 6.350 12 C 0.080 3.920 13 C -0.094 4.094 14 C 0.026 3.974 15 C -0.545 4.545 16 H 0.066 0.934 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.265 1.265 23 H 0.029 0.971 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.193 0.807 29 H 0.195 0.805 30 H 0.161 0.839 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.068 0.932 35 H -0.003 1.003 36 H -0.003 1.003 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 3.273 -23.068 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 C -0.078 4.078 4 C -0.061 4.061 5 N -0.183 5.183 6 C -0.070 4.070 7 C -0.133 4.133 8 C -0.108 4.108 9 C 0.345 3.655 10 O -0.401 6.401 11 O -0.267 6.267 12 C 0.007 3.993 13 C -0.131 4.131 14 C -0.011 4.011 15 C -0.583 4.583 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.210 1.210 22 H -0.190 1.190 23 H 0.048 0.952 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.210 0.790 29 H 0.212 0.788 30 H 0.179 0.821 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.806 3.212 -23.657 24.039 hybrid contribution -0.340 -0.406 2.144 2.208 sum 2.466 2.806 -21.513 21.835 Atomic orbital electron populations 1.21581 0.93993 1.02469 1.01026 1.20840 0.96942 0.90749 1.04816 1.21311 0.95975 0.98265 0.92206 1.23133 0.94675 0.90642 0.97671 1.67636 1.10561 1.07855 1.32266 1.23282 0.96079 1.01308 0.86283 1.22750 0.95267 0.93513 1.01815 1.19519 1.04957 0.96327 0.90005 1.21549 0.74555 0.84244 0.85180 1.90767 1.42771 1.18749 1.87774 1.86504 1.78612 1.46062 1.15498 1.23196 1.00547 0.95813 0.79753 1.21467 1.02265 0.98101 0.91301 1.18929 0.95290 0.95290 0.91590 1.21601 1.44451 1.00000 0.92232 0.91607 1.26005 0.94651 0.96850 1.02349 1.70090 1.46075 1.18753 1.22438 0.85452 0.79169 0.78664 0.77488 1.19027 1.20979 1.19009 0.95203 0.91436 0.91299 0.88034 0.90063 0.79042 0.78814 0.82101 0.91674 0.91607 0.91347 0.91377 0.98468 0.98456 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.58 71.98 0.69 -1.89 16 2 C -0.10 -1.85 5.35 29.84 0.16 -1.69 16 3 C -0.08 -1.53 5.19 -19.49 -0.10 -1.64 16 4 C 0.10 1.60 10.84 84.68 0.92 2.52 16 5 N -0.47 -8.78 10.33 -196.01 -2.03 -10.81 16 6 C 0.09 1.41 11.17 84.67 0.95 2.35 16 7 C -0.11 -2.20 9.71 22.64 0.22 -1.98 16 8 C -0.10 -2.38 5.91 -19.89 -0.12 -2.50 16 9 C 0.50 15.08 7.90 70.43 0.56 15.64 16 10 O -0.51 -17.18 12.12 20.05 0.24 -16.93 16 11 O -0.35 -11.25 9.58 -55.81 -0.53 -11.79 16 12 C 0.08 2.90 5.47 71.98 0.39 3.29 16 13 C -0.09 -3.80 5.53 30.60 0.17 -3.63 16 14 C 0.03 1.36 4.97 29.85 0.15 1.51 16 15 C -0.55 -30.53 9.11 25.60 0.23 -30.30 16 16 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 17 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 18 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 19 Si 0.97 43.61 29.54 68.60 2.03 45.63 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 H 0.03 0.73 7.30 -2.39 -0.02 0.71 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.10 1.32 8.06 -2.38 -0.02 1.30 16 27 H 0.08 2.02 5.64 -2.39 -0.01 2.01 16 28 H 0.19 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.20 1.85 8.06 -2.91 -0.02 1.82 16 30 H 0.16 2.78 7.71 -2.91 -0.02 2.76 16 31 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 34 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -66.92 318.39 5.72 -61.19 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 1.05 Total: 6.80 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 4.68 Total: -17.88 kcal Atomic # 7 Polarization: -65.29 SS G_CDS: -1.74 Total: -67.03 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.29 Total: -28.72 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -66.92 5.72 -61.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781265538.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.766 kcal (2) G-P(sol) polarization free energy of solvation -66.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds