Wall clock time and date at job start Mon Mar 30 2020 06:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 13 13 C 1.34715 * 116.99993 * 89.99916 * 12 2 1 14 14 O 1.21469 * 119.99853 * 0.02562 * 13 12 2 15 15 C 1.47738 * 119.99876 * 180.02562 * 13 12 2 16 16 C 1.39667 * 120.11466 * 359.71977 * 15 13 12 17 17 C 1.37972 * 119.99833 * 179.76303 * 16 15 13 18 18 C 1.38256 * 120.23009 * 0.51775 * 17 16 15 19 19 C 1.38985 * 120.23363 * 359.73978 * 18 17 16 20 20 N 1.39711 * 119.99980 * 179.97438 * 19 18 17 21 21 C 1.46509 * 119.99844 * 180.02562 * 20 19 18 22 22 C 1.46495 * 120.00627 * 0.02562 * 20 19 18 23 23 C 1.38672 * 119.99587 * 0.02562 * 19 18 17 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.07998 * 120.00150 * 0.02562 * 16 15 13 29 29 H 1.07996 * 119.88171 * 180.23450 * 17 16 15 30 30 H 1.08005 * 119.87936 * 179.75663 * 18 17 16 31 31 H 1.08996 * 109.46741 * 89.99932 * 21 20 19 32 32 H 1.08990 * 109.47079 * 210.00174 * 21 20 19 33 33 H 1.08999 * 109.46799 * 330.00363 * 21 20 19 34 34 H 1.08998 * 109.47327 * 89.99395 * 22 20 19 35 35 H 1.08995 * 109.47422 * 209.99936 * 22 20 19 36 36 H 1.09004 * 109.46908 * 329.99776 * 22 20 19 37 37 H 1.08000 * 120.11183 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 8 2.0140 -0.6844 -1.1856 13 6 2.2178 0.0668 -2.2851 14 8 1.9977 1.2610 -2.2541 15 6 2.7091 -0.5618 -3.5286 16 6 2.9685 -1.9337 -3.5652 17 6 3.4226 -2.5190 -4.7291 18 6 3.6326 -1.7503 -5.8589 19 6 3.3827 -0.3834 -5.8317 20 7 3.5971 0.3888 -6.9761 21 6 3.3342 1.8299 -6.9472 22 6 4.0848 -0.2422 -8.2049 23 6 2.9215 0.2140 -4.6684 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 2.8097 -2.5370 -2.6836 29 1 3.6189 -3.5806 -4.7564 30 1 3.9919 -2.2138 -6.7659 31 1 4.2379 2.3580 -6.6432 32 1 3.0345 2.1644 -7.9403 33 1 2.5347 2.0391 -6.2366 34 1 3.2369 -0.5696 -8.8065 35 1 4.6769 0.4761 -8.7720 36 1 4.7037 -1.1027 -7.9506 37 1 2.7263 1.2760 -4.6453 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802083629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:04 Heat of formation + Delta-G solvation = -51.738913 kcal Electronic energy + Delta-G solvation = -19306.019231 eV Core-core repulsion = 16241.694940 eV Total energy + Delta-G solvation = -3064.324290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.95939 -38.84276 -36.18522 -35.55033 -33.21570 -31.28425 -30.20294 -29.37056 -28.35707 -25.29448 -24.83441 -23.95551 -21.33998 -21.07668 -19.46509 -17.82694 -16.59610 -16.40046 -15.64923 -15.39296 -15.25231 -15.15280 -14.83607 -14.46426 -13.84341 -13.61799 -13.01692 -12.81103 -12.58892 -12.41576 -12.20043 -12.07269 -11.81884 -11.45838 -11.20101 -11.06469 -10.92947 -10.80791 -10.32796 -10.25420 -9.87762 -9.65735 -9.49646 -8.87789 -8.84792 -8.45979 -7.33776 -6.15375 -4.21988 1.05118 1.64827 2.97280 3.20527 3.27243 3.32386 3.36571 3.72977 4.13900 4.36536 4.81019 4.84566 4.99773 5.11218 5.15820 5.17932 5.38023 5.44176 5.46689 5.53374 5.58660 5.64857 5.80243 6.01639 6.22478 6.59123 6.65791 6.68219 6.80546 6.94185 6.95897 7.12024 7.20556 7.40028 7.62847 7.76232 7.96543 8.17345 8.67286 8.92112 9.43223 10.92233 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037571 B = 0.004069 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.074895 B = 6878.842990 C = 7312.772922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.349 6.349 13 C 0.495 3.505 14 O -0.519 6.519 15 C -0.066 4.066 16 C -0.118 4.118 17 C -0.088 4.088 18 C -0.174 4.174 19 C 0.196 3.804 20 N -0.642 5.642 21 C 0.092 3.908 22 C 0.096 3.904 23 C -0.138 4.138 24 H 0.099 0.901 25 H 0.037 0.963 26 H 0.016 0.984 27 H 0.266 0.734 28 H 0.138 0.862 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.137 -3.471 -19.219 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.558 4.558 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.265 6.265 13 C 0.339 3.661 14 O -0.410 6.410 15 C -0.067 4.067 16 C -0.138 4.138 17 C -0.107 4.107 18 C -0.196 4.196 19 C 0.096 3.904 20 N -0.355 5.355 21 C -0.051 4.051 22 C -0.047 4.047 23 C -0.160 4.160 24 H 0.118 0.882 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.156 0.844 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.992 -2.894 -19.163 20.013 hybrid contribution 0.201 -0.180 0.816 0.859 sum 5.194 -3.074 -18.347 19.314 Atomic orbital electron populations 1.22162 0.97520 1.00159 1.01403 1.20660 0.91423 0.93982 0.77686 0.93523 1.21031 1.32409 1.13487 0.88853 0.91242 1.24888 0.94931 0.95124 0.99057 1.69902 1.36112 1.22611 1.24136 0.86268 0.78518 0.79920 0.81394 1.20415 1.20979 1.19562 1.86544 1.75721 1.43140 1.21061 1.21076 0.74983 0.85222 0.84782 1.90745 1.48978 1.16386 1.84892 1.19152 1.01762 0.94120 0.91715 1.21359 0.99730 0.93770 0.98931 1.20871 0.98105 0.99598 0.92085 1.20831 1.07021 0.92020 0.99754 1.17600 0.95602 0.90661 0.86533 1.46232 1.72928 1.06878 1.09490 1.21652 1.01122 0.80024 1.02343 1.21585 0.98651 0.98502 0.85938 1.20753 1.03756 1.00636 0.90864 0.88226 0.94374 0.96505 0.92425 0.84384 0.85480 0.85865 0.93326 0.91664 0.90964 0.93573 0.91707 0.91376 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.33 37.16 0.35 -3.69 16 2 C 0.21 5.94 2.56 -27.89 -0.07 5.87 16 3 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 4 C -0.52 -14.85 8.90 -34.44 -0.31 -15.16 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.62 11.32 55.43 0.63 -25.00 16 8 Si 0.91 21.31 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 O -0.35 -8.67 9.11 -40.53 -0.37 -9.04 16 13 C 0.50 11.26 7.87 34.61 0.27 11.53 16 14 O -0.52 -12.96 15.60 -19.24 -0.30 -13.26 16 15 C -0.07 -1.20 5.87 -105.01 -0.62 -1.81 16 16 C -0.12 -1.85 9.61 -39.15 -0.38 -2.23 16 17 C -0.09 -1.10 10.02 -39.67 -0.40 -1.50 16 18 C -0.17 -2.06 9.20 -39.30 -0.36 -2.43 16 19 C 0.20 2.62 6.55 -83.83 -0.55 2.07 16 20 N -0.64 -6.94 3.41 -187.59 -0.64 -7.58 16 21 C 0.09 0.86 10.19 59.85 0.61 1.46 16 22 C 0.10 0.72 10.19 59.84 0.61 1.33 16 23 C -0.14 -2.21 8.75 -38.95 -0.34 -2.55 16 24 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 25 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.14 2.19 7.60 -52.49 -0.40 1.79 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.12 1.12 6.12 -52.48 -0.32 0.80 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 33 H 0.07 0.75 6.19 -51.93 -0.32 0.42 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 36 H 0.07 0.46 6.19 -51.93 -0.32 0.14 16 37 H 0.14 2.18 5.73 -52.49 -0.30 1.87 16 LS Contribution 312.60 15.07 4.71 4.71 Total: -1.00 -32.09 312.60 -7.12 -39.20 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.85 Total: 0.13 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -1.28 Total: -5.46 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: -0.01 Total: -32.57 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.67 Total: -22.29 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.09 -7.12 -39.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802083629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.535 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds