Wall clock time and date at job start Mon Mar 30 2020 06:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 13 13 C 1.34715 * 116.99993 * 89.99916 * 12 2 1 14 14 O 1.21469 * 119.99853 * 0.02562 * 13 12 2 15 15 C 1.47738 * 119.99876 * 180.02562 * 13 12 2 16 16 C 1.39667 * 120.11466 * 359.71977 * 15 13 12 17 17 C 1.37972 * 119.99833 * 179.76303 * 16 15 13 18 18 C 1.38256 * 120.23009 * 0.51775 * 17 16 15 19 19 C 1.38985 * 120.23363 * 359.73978 * 18 17 16 20 20 N 1.39711 * 119.99980 * 179.97438 * 19 18 17 21 21 C 1.46509 * 119.99844 * 180.02562 * 20 19 18 22 22 C 1.46495 * 120.00627 * 0.02562 * 20 19 18 23 23 C 1.38672 * 119.99587 * 0.02562 * 19 18 17 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 28 28 H 1.07998 * 120.00150 * 0.02562 * 16 15 13 29 29 H 1.07996 * 119.88171 * 180.23450 * 17 16 15 30 30 H 1.08005 * 119.87936 * 179.75663 * 18 17 16 31 31 H 1.08996 * 109.46741 * 89.99932 * 21 20 19 32 32 H 1.08990 * 109.47079 * 210.00174 * 21 20 19 33 33 H 1.08999 * 109.46799 * 330.00363 * 21 20 19 34 34 H 1.08998 * 109.47327 * 89.99395 * 22 20 19 35 35 H 1.08995 * 109.47422 * 209.99936 * 22 20 19 36 36 H 1.09004 * 109.46908 * 329.99776 * 22 20 19 37 37 H 1.08000 * 120.11183 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 8 2.0140 -0.6844 -1.1856 13 6 2.2178 0.0668 -2.2851 14 8 1.9977 1.2610 -2.2541 15 6 2.7091 -0.5618 -3.5286 16 6 2.9685 -1.9337 -3.5652 17 6 3.4226 -2.5190 -4.7291 18 6 3.6326 -1.7503 -5.8589 19 6 3.3827 -0.3834 -5.8317 20 7 3.5971 0.3888 -6.9761 21 6 3.3342 1.8299 -6.9472 22 6 4.0848 -0.2422 -8.2049 23 6 2.9215 0.2140 -4.6684 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 28 1 2.8097 -2.5370 -2.6836 29 1 3.6189 -3.5806 -4.7564 30 1 3.9919 -2.2138 -6.7659 31 1 4.2379 2.3580 -6.6432 32 1 3.0345 2.1644 -7.9403 33 1 2.5347 2.0391 -6.2366 34 1 3.2369 -0.5696 -8.8065 35 1 4.6769 0.4761 -8.7720 36 1 4.7037 -1.1027 -7.9506 37 1 2.7263 1.2760 -4.6453 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802083629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:04 Heat of formation + Delta-G solvation = -70.304308 kcal Electronic energy + Delta-G solvation = -19306.824287 eV Core-core repulsion = 16241.694940 eV Total energy + Delta-G solvation = -3065.129346 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49460 -40.22986 -37.63679 -37.03241 -35.33580 -32.53592 -31.68205 -30.95475 -29.13918 -27.48244 -25.72261 -25.46825 -23.00493 -22.31611 -21.11136 -19.23905 -18.55615 -18.05372 -17.00164 -16.84550 -16.63996 -16.39830 -16.17785 -15.93722 -14.99882 -14.77968 -14.66414 -14.27256 -13.96670 -13.51807 -13.41421 -13.22678 -13.14763 -13.00950 -12.94323 -12.83974 -12.50454 -12.39729 -12.14811 -12.03249 -11.62940 -11.43500 -11.01368 -10.87140 -10.61612 -10.01633 -8.29621 -8.27233 -6.46969 -0.24286 0.55201 1.41722 1.44564 1.56025 1.64776 1.88858 2.25544 2.42909 2.88919 3.01130 3.77484 3.89769 4.06600 4.21983 4.33028 4.39293 4.48683 4.52107 4.54359 4.67208 4.75971 4.79970 4.81173 4.84946 4.92662 4.97560 5.08838 5.20014 5.45676 5.46130 5.51000 5.59082 5.76545 5.87088 6.03217 6.28872 6.46343 6.57873 6.90727 7.24504 8.78680 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037571 B = 0.004069 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.074895 B = 6878.842990 C = 7312.772922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.216 3.784 3 H 0.006 0.994 4 C -0.549 4.549 5 H 0.069 0.931 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.987 3.013 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.261 1.261 12 O -0.353 6.353 13 C 0.489 3.511 14 O -0.554 6.554 15 C -0.095 4.095 16 C -0.130 4.130 17 C -0.074 4.074 18 C -0.157 4.157 19 C 0.198 3.802 20 N -0.643 5.643 21 C 0.086 3.914 22 C 0.089 3.911 23 C -0.155 4.155 24 H 0.083 0.917 25 H 0.048 0.952 26 H 0.020 0.980 27 H 0.272 0.728 28 H 0.130 0.870 29 H 0.167 0.833 30 H 0.164 0.836 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.444 -5.674 -21.165 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.163 3.837 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.087 0.913 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.809 3.191 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.185 1.185 12 O -0.269 6.269 13 C 0.336 3.664 14 O -0.448 6.448 15 C -0.097 4.097 16 C -0.150 4.150 17 C -0.092 4.092 18 C -0.179 4.179 19 C 0.095 3.905 20 N -0.355 5.355 21 C -0.057 4.057 22 C -0.053 4.053 23 C -0.177 4.177 24 H 0.102 0.898 25 H 0.067 0.933 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.148 0.852 29 H 0.184 0.816 30 H 0.182 0.818 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.306 -5.091 -21.164 22.663 hybrid contribution -0.162 0.555 1.217 1.347 sum 6.144 -4.536 -19.947 21.359 Atomic orbital electron populations 1.21988 0.96643 1.00528 1.00770 1.20415 0.92154 0.92114 0.79055 0.97634 1.21292 1.33545 1.14018 0.89778 0.91253 1.25882 0.94624 0.95688 1.02221 1.70023 1.36555 1.23712 1.25304 0.85127 0.78103 0.78966 0.76871 1.19726 1.19898 1.18477 1.86532 1.76128 1.43104 1.21152 1.22031 0.73952 0.85019 0.85378 1.90704 1.50781 1.17883 1.85413 1.18983 1.05060 0.95541 0.90087 1.21403 1.00790 0.92496 1.00346 1.21252 0.95948 1.01448 0.90579 1.21300 1.04625 0.91080 1.00872 1.17742 0.94618 0.91726 0.86388 1.46545 1.72067 1.07258 1.09667 1.21753 1.00697 0.79716 1.03485 1.21862 0.99504 0.99363 0.84571 1.20691 1.05345 1.00075 0.91632 0.89798 0.93328 0.96073 0.91914 0.85240 0.81579 0.81838 0.93127 0.88897 0.92814 0.92391 0.89832 0.90162 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.70 9.33 71.98 0.67 -7.03 16 2 C 0.22 12.58 2.56 29.85 0.08 12.66 16 3 H 0.01 0.38 7.16 -2.39 -0.02 0.36 16 4 C -0.55 -32.31 8.90 25.60 0.23 -32.08 16 5 H 0.07 3.97 7.81 -2.91 -0.02 3.95 16 6 C 0.02 0.87 5.30 84.66 0.45 1.32 16 7 N -0.92 -54.07 11.32 21.45 0.24 -53.83 16 8 Si 0.99 43.68 29.54 68.60 2.03 45.71 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 12 O -0.35 -18.54 9.11 -56.25 -0.51 -19.05 16 13 C 0.49 23.74 7.87 70.33 0.55 24.29 16 14 O -0.55 -29.89 15.60 19.94 0.31 -29.58 16 15 C -0.09 -3.60 5.87 -20.12 -0.12 -3.71 16 16 C -0.13 -4.04 9.61 22.55 0.22 -3.83 16 17 C -0.07 -1.61 10.02 22.21 0.22 -1.39 16 18 C -0.16 -3.10 9.20 22.45 0.21 -2.90 16 19 C 0.20 4.90 6.55 38.17 0.25 5.15 16 20 N -0.64 -12.24 3.41 -747.42 -2.55 -14.78 16 21 C 0.09 1.50 10.19 127.77 1.30 2.81 16 22 C 0.09 0.94 10.19 127.77 1.30 2.24 16 23 C -0.15 -5.08 8.75 22.68 0.20 -4.88 16 24 H 0.08 4.82 6.07 -2.39 -0.01 4.81 16 25 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 26 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.13 4.16 7.60 -2.91 -0.02 4.14 16 29 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 30 H 0.16 1.97 6.12 -2.91 -0.02 1.95 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 1.09 8.07 -2.39 -0.02 1.07 16 33 H 0.05 1.14 6.19 -2.39 -0.01 1.13 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.08 0.61 8.07 -2.39 -0.02 0.60 16 36 H 0.08 0.67 6.19 -2.39 -0.01 0.66 16 37 H 0.12 4.20 5.73 -2.91 -0.02 4.19 16 Total: -1.00 -73.21 312.60 6.15 -67.06 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.07 Total: 11.83 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 5.56 Total: -7.35 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -2.31 Total: -68.62 kcal Atomic # 8 Polarization: -48.43 SS G_CDS: -0.20 Total: -48.63 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -73.21 6.15 -67.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802083629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.242 kcal (2) G-P(sol) polarization free energy of solvation -73.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds