Wall clock time and date at job start Mon Mar 30 2020 06:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47039 * 2 1 4 4 C 1.50698 * 109.47588 * 239.99778 * 2 1 3 5 5 H 1.07998 * 120.00126 * 240.00429 * 4 2 1 6 6 C 1.37878 * 119.99933 * 59.99792 * 4 2 1 7 7 N 1.31520 * 119.99710 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00408 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47463 * 89.99944 * 8 6 4 10 10 H 1.48498 * 109.47571 * 210.00219 * 8 6 4 11 11 H 1.48506 * 109.47122 * 330.00383 * 8 6 4 12 12 O 1.45200 * 109.46962 * 119.99902 * 2 1 3 13 13 C 1.34716 * 116.99962 * 269.99924 * 12 2 1 14 14 O 1.21464 * 119.99825 * 0.02562 * 13 12 2 15 15 C 1.47747 * 119.99777 * 180.02562 * 13 12 2 16 16 C 1.39663 * 120.11692 * 0.02562 * 15 13 12 17 17 C 1.37972 * 120.00077 * 179.97438 * 16 15 13 18 18 C 1.38252 * 120.22917 * 359.74419 * 17 16 15 19 19 C 1.38988 * 120.23190 * 0.51258 * 18 17 16 20 20 N 1.39715 * 119.99870 * 179.76679 * 19 18 17 21 21 C 1.46499 * 119.99845 * 179.72341 * 20 19 18 22 22 C 1.46498 * 120.00331 * 359.44911 * 20 19 18 23 23 C 1.38664 * 119.99843 * 359.48954 * 19 18 17 24 24 H 1.08997 * 109.47039 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47343 * 299.99983 * 1 2 3 26 26 H 1.08997 * 109.47171 * 60.00223 * 1 2 3 27 27 H 0.97003 * 119.99941 * 180.02562 * 7 6 4 28 28 H 1.08003 * 120.00209 * 0.02562 * 16 15 13 29 29 H 1.07996 * 119.88098 * 180.02562 * 17 16 15 30 30 H 1.08002 * 119.88430 * 180.25739 * 18 17 16 31 31 H 1.09004 * 109.47522 * 89.99945 * 21 20 19 32 32 H 1.09003 * 109.47296 * 210.00043 * 21 20 19 33 33 H 1.09004 * 109.47373 * 329.99733 * 21 20 19 34 34 H 1.09000 * 109.47295 * 90.00030 * 22 20 19 35 35 H 1.09003 * 109.46983 * 209.99998 * 22 20 19 36 36 H 1.09006 * 109.46582 * 329.99612 * 22 20 19 37 37 H 1.08003 * 120.11674 * 180.23481 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3215 -1.1203 -4.0078 9 1 1.3430 -2.1617 -4.4118 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 8 2.0139 -0.6845 1.1856 13 6 2.2178 0.0668 2.2851 14 8 1.9968 1.2607 2.2544 15 6 2.7101 -0.5617 3.5283 16 6 2.9654 -1.9343 3.5661 17 6 3.4256 -2.5186 4.7282 18 6 3.6407 -1.7491 5.8564 19 6 3.3847 -0.3832 5.8311 20 7 3.5992 0.3890 6.9755 21 6 3.3351 1.8297 6.9470 22 6 4.0823 -0.2429 8.2057 23 6 2.9220 0.2140 4.6683 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7089 1.1613 -3.4844 28 1 2.8034 -2.5382 2.6855 29 1 3.6228 -3.5801 4.7551 30 1 4.0050 -2.2116 6.7618 31 1 2.3010 2.0155 7.2372 32 1 4.0043 2.3356 7.6430 33 1 3.5037 2.2102 5.9395 34 1 5.1722 -0.2320 8.2160 35 1 3.7053 0.3063 9.0685 36 1 3.7287 -1.2731 8.2479 37 1 2.7261 1.2758 4.6454 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802083630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:07 Heat of formation + Delta-G solvation = -51.804027 kcal Electronic energy + Delta-G solvation = -19306.071483 eV Core-core repulsion = 16241.744369 eV Total energy + Delta-G solvation = -3064.327114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.95957 -38.84327 -36.18529 -35.55110 -33.21479 -31.28375 -30.20289 -29.37008 -28.35628 -25.29460 -24.83333 -23.95538 -21.33986 -21.07685 -19.46546 -17.82629 -16.59635 -16.39969 -15.64836 -15.39527 -15.24556 -15.15556 -14.83982 -14.46466 -13.84435 -13.61499 -13.01682 -12.81076 -12.58203 -12.42547 -12.19101 -12.09563 -11.79823 -11.46265 -11.20950 -11.06493 -10.92838 -10.78793 -10.34992 -10.24924 -9.87770 -9.65682 -9.49178 -8.87763 -8.85038 -8.45891 -7.33821 -6.15371 -4.22002 1.05138 1.64832 2.97311 3.20524 3.27214 3.32400 3.36527 3.73006 4.13906 4.36539 4.81068 4.84636 4.99829 5.11154 5.15811 5.17878 5.38099 5.44178 5.46537 5.53310 5.58545 5.64906 5.80287 6.01624 6.22489 6.59097 6.65791 6.68230 6.80550 6.94238 6.95904 7.12057 7.20564 7.40023 7.62861 7.76255 7.96568 8.17320 8.67287 8.92099 9.43191 10.92213 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037567 B = 0.004070 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.149033 B = 6878.562322 C = 7312.686788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.520 4.520 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.349 6.349 13 C 0.495 3.505 14 O -0.519 6.519 15 C -0.066 4.066 16 C -0.118 4.118 17 C -0.088 4.088 18 C -0.174 4.174 19 C 0.196 3.804 20 N -0.642 5.642 21 C 0.092 3.908 22 C 0.096 3.904 23 C -0.138 4.138 24 H 0.037 0.963 25 H 0.016 0.984 26 H 0.099 0.901 27 H 0.266 0.734 28 H 0.138 0.862 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.139 -3.469 19.219 20.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.558 4.558 5 H 0.088 0.912 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.265 6.265 13 C 0.339 3.661 14 O -0.410 6.410 15 C -0.067 4.067 16 C -0.138 4.138 17 C -0.107 4.107 18 C -0.196 4.196 19 C 0.096 3.904 20 N -0.355 5.355 21 C -0.051 4.051 22 C -0.047 4.047 23 C -0.160 4.160 24 H 0.056 0.944 25 H 0.035 0.965 26 H 0.118 0.882 27 H 0.076 0.924 28 H 0.156 0.844 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.004 -2.886 19.162 20.014 hybrid contribution 0.177 -0.194 -0.813 0.855 sum 5.181 -3.080 18.349 19.314 Atomic orbital electron populations 1.22163 0.97528 1.00157 1.01407 1.20659 0.91416 0.93987 0.77687 0.93514 1.21031 1.32426 1.13457 0.88853 0.91241 1.24890 0.94969 0.95095 0.99062 1.69907 1.36168 1.22557 1.24134 0.86264 0.79306 0.79112 0.81392 1.20364 1.21005 1.19601 1.86543 1.75724 1.43141 1.21060 1.21076 0.74986 0.85220 0.84778 1.90743 1.48974 1.16400 1.84880 1.19153 1.01767 0.94118 0.91711 1.21358 0.99679 0.93788 0.98963 1.20870 0.98056 0.99601 0.92134 1.20830 1.07170 0.91991 0.99625 1.17600 0.95604 0.90662 0.86535 1.46232 1.73095 1.06830 1.09370 1.21654 1.00412 0.80070 1.03009 1.21587 0.98614 0.98619 0.85852 1.20753 1.03883 1.00540 0.90835 0.94383 0.96502 0.88227 0.92427 0.84385 0.85479 0.85868 0.93361 0.91658 0.90938 0.93550 0.91713 0.91395 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 9.33 37.16 0.35 -3.69 16 2 C 0.21 5.94 2.56 -27.89 -0.07 5.87 16 3 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 4 C -0.52 -14.85 8.90 -34.44 -0.31 -15.15 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.62 11.32 55.43 0.63 -25.00 16 8 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 12 O -0.35 -8.67 9.11 -40.54 -0.37 -9.04 16 13 C 0.50 11.26 7.87 34.62 0.27 11.53 16 14 O -0.52 -12.96 15.60 -19.24 -0.30 -13.26 16 15 C -0.07 -1.20 5.87 -105.01 -0.62 -1.81 16 16 C -0.12 -1.85 9.61 -39.15 -0.38 -2.23 16 17 C -0.09 -1.10 10.02 -39.67 -0.40 -1.50 16 18 C -0.17 -2.06 9.20 -39.30 -0.36 -2.42 16 19 C 0.20 2.62 6.55 -83.83 -0.55 2.07 16 20 N -0.64 -6.94 3.41 -187.58 -0.64 -7.58 16 21 C 0.09 0.86 10.18 59.85 0.61 1.46 16 22 C 0.10 0.72 10.18 59.85 0.61 1.33 16 23 C -0.14 -2.21 8.75 -38.95 -0.34 -2.55 16 24 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.10 2.75 6.07 -51.93 -0.32 2.43 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.14 2.18 7.61 -52.48 -0.40 1.78 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.12 1.12 6.14 -52.49 -0.32 0.80 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 33 H 0.07 0.75 6.19 -51.93 -0.32 0.43 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 36 H 0.07 0.46 6.21 -51.93 -0.32 0.14 16 37 H 0.14 2.18 5.73 -52.48 -0.30 1.87 16 LS Contribution 312.63 15.07 4.71 4.71 Total: -1.00 -32.09 312.63 -7.12 -39.20 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.85 Total: 0.13 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -1.28 Total: -5.46 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: -0.01 Total: -32.58 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.67 Total: -22.29 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.09 -7.12 -39.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802083630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.599 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds